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Homology
BLAST of mRNA_F-serratus_M_contig1005.154.1 vs. uniprot
Match: A0A6H5KYX0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX0_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 1.300e-13 Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 154 SLAPKSPLRRSIAAFSKDVRR--GATILDSDDSDLEDDAEYRAVDNLNASISVPSTTADRLGAVAAVADRGPDPHNLSFSITTTQMHGIADSDSSLELTGTFTT 459
SLA KSP+R+SI A+S+DVR G DSD + A R V+NLNAS+ P+ +A + GA AA + +P N SFSI +Q+H + DSDSSLELTGTFTT
Sbjct: 1198 SLAIKSPVRKSIMAYSEDVRAMGGGGPPSPYDSDFDPAA--RRVENLNASLLGPAASAAKRGASAASYE---EPQNRSFSINNSQLHRLNDSDSSLELTGTFTT 1296
BLAST of mRNA_F-serratus_M_contig1005.154.1 vs. uniprot
Match: D7FTI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI1_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 1.360e-8 Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = 1
Query: 193 AFSKDVRR--GATILDSDDSDLEDDAEYRAVDNLNASISVPSTTADRLGAVAAVADRGPDPHNLSFSITTTQMHGIADSDSSLELTGTFTTPPE 468
A+S+DVR G DSD + A R V+NLNAS+ P+ +A + GA AA + +P N SFSI +Q+H + DSDSSLELTGTFTT E
Sbjct: 2 AYSEDVRAMGGGGPPSPYDSDFDPAA--RRVENLNASLLGPAASAVKRGASAASYE---EPQNRSFSINNSQLHRLNDSDSSLELTGTFTTSEE 90
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 585 |
Cds size | 585 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928797.4682243-CDS-F-serratus_M_contig1005:60354..60482 | 1622928797.4682243-CDS-F-serratus_M_contig1005:60354..60482 | Fucus serratus male | CDS | F-serratus_M_contig1005 60355..60482 + |
1690962576.4131444-CDS-F-serratus_M_contig1005:60354..60482 | 1690962576.4131444-CDS-F-serratus_M_contig1005:60354..60482 | Fucus serratus male | CDS | F-serratus_M_contig1005 60355..60482 + |
1622928797.4786465-CDS-F-serratus_M_contig1005:60854..60919 | 1622928797.4786465-CDS-F-serratus_M_contig1005:60854..60919 | Fucus serratus male | CDS | F-serratus_M_contig1005 60855..60919 + |
1690962576.4229262-CDS-F-serratus_M_contig1005:60854..60919 | 1690962576.4229262-CDS-F-serratus_M_contig1005:60854..60919 | Fucus serratus male | CDS | F-serratus_M_contig1005 60855..60919 + |
1622928797.489102-CDS-F-serratus_M_contig1005:61603..61797 | 1622928797.489102-CDS-F-serratus_M_contig1005:61603..61797 | Fucus serratus male | CDS | F-serratus_M_contig1005 61604..61797 + |
1690962576.4337096-CDS-F-serratus_M_contig1005:61603..61797 | 1690962576.4337096-CDS-F-serratus_M_contig1005:61603..61797 | Fucus serratus male | CDS | F-serratus_M_contig1005 61604..61797 + |
1622928797.4992602-CDS-F-serratus_M_contig1005:62428..62626 | 1622928797.4992602-CDS-F-serratus_M_contig1005:62428..62626 | Fucus serratus male | CDS | F-serratus_M_contig1005 62429..62626 + |
1690962576.4436944-CDS-F-serratus_M_contig1005:62428..62626 | 1690962576.4436944-CDS-F-serratus_M_contig1005:62428..62626 | Fucus serratus male | CDS | F-serratus_M_contig1005 62429..62626 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1005.154.1 >prot_F-serratus_M_contig1005.154.1 ID=prot_F-serratus_M_contig1005.154.1|Name=mRNA_F-serratus_M_contig1005.154.1|organism=Fucus serratus male|type=polypeptide|length=195bp
MDFATSPVEDFCSFDGGNESMEWGDGREDREGDGLPPGKASTSPGRRRRR DSLAPKSPLRRSIAAFSKDVRRGATILDSDDSDLEDDAEYRAVDNLNASI SVPSTTADRLGAVAAVADRGPDPHNLSFSITTTQMHGIADSDSSLELTGT FTTPPEQAAASAAPAQAAPALACASDGGEGRGIDDATSDDRCGC* back to topmRNA from alignment at F-serratus_M_contig1005:60355..62626+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1005.154.1 ID=mRNA_F-serratus_M_contig1005.154.1|Name=mRNA_F-serratus_M_contig1005.154.1|organism=Fucus serratus male|type=mRNA|length=2272bp|location=Sequence derived from alignment at F-serratus_M_contig1005:60355..62626+ (Fucus serratus male) ATGGATTTTGCCACTTCCCCCGTCGAGGATTTCTGTTCGTTCGATGGTGG
TAACGAAAGCATGGAGTGGGGAGACGGTCGAGAGGATCGGGAGGGCGACG
GACTACCACCGGGGAAGGCGTCGACCAGGTGACGACGTGTCGTCTCGTGG
CGATCGACCACAAAGTGGGTCTCCACTTGACAAAAGTTTTGTGACGGCGA
GCGGGAGGGGAGGCGTGTAGACCCGAACAAAAATATAAAAGAAAATTAGT
ACCTACAGTTCTCCTTGTTGCCCCGGGGTTGTTGGCCTATCCTCCCCCCC
CCCGCCTCTCGAACGCCTGCTCATTTACACTTTACACTTTACACTTTTCA
CTTTACACTGGCTTGTTTTTTTGCCCGAGCTCTACGGCCCCGCTTTCCTG
GTTGTGGTTGTGGTTGTGGTTCTGCTGCCGCGGTTCTGCTGACGCGCTTT
GGAATCTTGGAATTTGAAATTGATCGTTCGCCGCCAATTTTTTTTCACAG
CCCTGGCCGTCGGCGAAGGCGTGATAGTCTGGCTCCCAAGAGTCCGCTTC
GGAGGAGCATCGCGGGTAAGTGCAAATGTATAGTAGTTGAGTTACACTAC
GAACTCCTTCGAAATATTCAGCAATATTATATTTGTATAATCAAAATAGA
GGAAAGTACCGTGTAGAGCTGTAAAGAGGATATACTCAAATGTCGTACGG
GTGTATATAATATTTCTCGTATAGATTCGTGTGGTAACATACGTAAAAAA
TATGATGCGCATCGTGGAAATATTTCGTATTATAGTGTATATTATTTGCC
ATTTATAAGAGCAGTGCATAGTACTCGAAGGATAGCATATGATATGTATT
TTCTCGAATTAAGTATTTCGTGGACCCCCCCCCCCCCAAAGACCTCTGAC
TGTAGCTTTTGTACCCTGACTATAGTAATAATAAATTTATTAGTAAGACA
CCTCTTACAGTAATGTAGTATTAATAGTCTATTTATAGTTTATACAGTAT
AGAAATCTGAAGGTATACACGCCGTTATTTGGGGAAAATGGTTTCGAAAC
CTTTGGTAGGGATCATTATCAATGTCTGTTACTATCGCAAAAAAGGTCTA
CATGAGATGTTAAGGCGGGAAAAGTTGTAGGCGGGGGGAAGCCCTTTCTC
CTTACCATGATACTTTTACTTTTACATGGTCTTCGGAGGCCCTGTCGCTA
ATATCCTAACACCGCCCAAACTTTTTTTCTTTCTTTTTCTGTCCTTCAGC
GTTCTCCAAAGATGTCCGCCGTGGCGCGACGATTCTAGACTCCGATGATT
CTGACCTCGAGGACGACGCTGAGTACAGGGCGGTGGATAACTTGAACGCG
AGCATCTCCGTCCCGAGTACTACCGCGGATAGGCTTGGCGCCGTTGCAGC
TGTAGCGGATCGTGGCCCGGACCCCCACAATCTTTCGTTCTCGGTGAGGG
GCCCGTAGTTTGTAGAGGACTGGAGGCGGCACGGACACGGGACCGTGGCG
GTTTGGCGATTACGTAATACTGTCTGTACTATATATCATTTGACATCTGA
GTTGTTTTTTCATGTCATTTTTATGCATAAAGTGGTTATATCGTAATTAT
TTCGGGTATCGTGTTGACTGTGCTGTTGTACTGATACTGCACTATTAATA
GAGCCTTAAAGCTGTACCCGGGGAACCTGTGTTTTCCTCGGGTGGGTTGT
GCGGGAGTTCGTGTATCTTTTGGATGCGTTGCTTCGCGTGGGGAGAGGGG
AGGATCGCGCGATTAAACGCATGATATGTAAATTAGTTTGGTATACTTGT
ATTAATTCTCTTATGGAATGTTTTCGATGCTTTTTACCATGCATATTACT
GATTGTGTAAACCGATTTCCGCGAGATACACGCACACACCACATAAGCTT
GGTTTTTGAAAGAAAAACGCCTCGCTAACTGAATCATCCCCGAAACTTTT
TTGTTTGTGATTCTCAAGTGCGCTTGTCTATCGCTGCGTTCGGAAAAATG
AGACCTATCTGATGTCTGATCTCCTTGTTTTGTTATCTGCGTTTTGTGTG
TTATCCTGTTTCGTATCTCTGAAGATCACGACCACCCAGATGCACGGCAT
CGCTGACTCCGACTCTTCCCTGGAGCTCACTGGCACGTTTACCACCCCTC
CCGAGCAAGCCGCAGCCTCGGCTGCCCCAGCTCAGGCTGCCCCAGCTCTT
GCTTGCGCCTCTGATGGCGGTGAAGGTCGCGGTATTGATGATGCCACTTC
AGATGACAGGTGTGGTTGCTAG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1005:60355..62626+ >mRNA_F-serratus_M_contig1005.154.1 ID=mRNA_F-serratus_M_contig1005.154.1|Name=mRNA_F-serratus_M_contig1005.154.1|organism=Fucus serratus male|type=CDS|length=1170bp|location=Sequence derived from alignment at F-serratus_M_contig1005:60355..62626+ (Fucus serratus male) ATGGATTTTGCCACTTCCCCCGTCGAGGATTTCTGTTCGTTCGATGGTGG TAACGAAAGCATGGAGTGGGGAGACGGTCGAGAGGATCGGGAGGGCGACG GACTACCACCGGGGAAGGCGTCGACCAGATGGATTTTGCCACTTCCCCCG TCGAGGATTTCTGTTCGTTCGATGGTGGTAACGAAAGCATGGAGTGGGGA GACGGTCGAGAGGATCGGGAGGGCGACGGACTACCACCGGGGAAGGCGTC GACCAGCCCTGGCCGTCGGCGAAGGCGTGATAGTCTGGCTCCCAAGAGTC CGCTTCGGAGGAGCATCGCGGCCCTGGCCGTCGGCGAAGGCGTGATAGTC TGGCTCCCAAGAGTCCGCTTCGGAGGAGCATCGCGGCGTTCTCCAAAGAT GTCCGCCGTGGCGCGACGATTCTAGACTCCGATGATTCTGACCTCGAGGA CGACGCTGAGTACAGGGCGGTGGATAACTTGAACGCGAGCATCTCCGTCC CGAGTACTACCGCGGATAGGCTTGGCGCCGTTGCAGCTGTAGCGGATCGT GGCCCGGACCCCCACAATCTTTCGTTCTCGCGTTCTCCAAAGATGTCCGC CGTGGCGCGACGATTCTAGACTCCGATGATTCTGACCTCGAGGACGACGC TGAGTACAGGGCGGTGGATAACTTGAACGCGAGCATCTCCGTCCCGAGTA CTACCGCGGATAGGCTTGGCGCCGTTGCAGCTGTAGCGGATCGTGGCCCG GACCCCCACAATCTTTCGTTCTCGATCACGACCACCCAGATGCACGGCAT CGCTGACTCCGACTCTTCCCTGGAGCTCACTGGCACGTTTACCACCCCTC CCGAGCAAGCCGCAGCCTCGGCTGCCCCAGCTCAGGCTGCCCCAGCTCTT GCTTGCGCCTCTGATGGCGGTGAAGGTCGCGGTATTGATGATGCCACTTC AGATGACAGGTGTGGTTGCTAGATCACGACCACCCAGATGCACGGCATCG CTGACTCCGACTCTTCCCTGGAGCTCACTGGCACGTTTACCACCCCTCCC GAGCAAGCCGCAGCCTCGGCTGCCCCAGCTCAGGCTGCCCCAGCTCTTGC TTGCGCCTCTGATGGCGGTGAAGGTCGCGGTATTGATGATGCCACTTCAG ATGACAGGTGTGGTTGCTAG back to top
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