mRNA_F-serratus_M_contig1005.154.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1005.154.1
Unique Name	mRNA_F-serratus_M_contig1005.154.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig1005.154.1 vs. uniprot
Match: A0A6H5KYX0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.300e-13
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 1

Query:  154 SLAPKSPLRRSIAAFSKDVRR--GATILDSDDSDLEDDAEYRAVDNLNASISVPSTTADRLGAVAAVADRGPDPHNLSFSITTTQMHGIADSDSSLELTGTFTT 459
            SLA KSP+R+SI A+S+DVR   G       DSD +  A  R V+NLNAS+  P+ +A + GA AA  +   +P N SFSI  +Q+H + DSDSSLELTGTFTT
Sbjct: 1198 SLAIKSPVRKSIMAYSEDVRAMGGGGPPSPYDSDFDPAA--RRVENLNASLLGPAASAAKRGASAASYE---EPQNRSFSINNSQLHRLNDSDSSLELTGTFTT 1296

[Close]

BLAST of mRNA_F-serratus_M_contig1005.154.1 vs. uniprot
Match: D7FTI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI1_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.360e-8
Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = 1

Query:  193 AFSKDVRR--GATILDSDDSDLEDDAEYRAVDNLNASISVPSTTADRLGAVAAVADRGPDPHNLSFSITTTQMHGIADSDSSLELTGTFTTPPE 468
            A+S+DVR   G       DSD +  A  R V+NLNAS+  P+ +A + GA AA  +   +P N SFSI  +Q+H + DSDSSLELTGTFTT  E
Sbjct:    2 AYSEDVRAMGGGGPPSPYDSDFDPAA--RRVENLNASLLGPAASAVKRGASAASYE---EPQNRSFSINNSQLHRLNDSDSSLELTGTFTTSEE 90

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1005.154.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1005.154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KYX0_9PHAE	1.300e-13	51.92	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
D7FTI1_ECTSI	1.360e-8	48.94	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1005	contig	F-serratus_M_contig1005:60355..62626 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	4
Model size	585
Cds size	585
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1005.154.1	prot_F-serratus_M_contig1005.154.1	Fucus serratus male	polypeptide	F-serratus_M_contig1005 60355..62626 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928797.4682243-CDS-F-serratus_M_contig1005:60354..60482	1622928797.4682243-CDS-F-serratus_M_contig1005:60354..60482	Fucus serratus male	CDS	F-serratus_M_contig1005 60355..60482 +
1690962576.4131444-CDS-F-serratus_M_contig1005:60354..60482	1690962576.4131444-CDS-F-serratus_M_contig1005:60354..60482	Fucus serratus male	CDS	F-serratus_M_contig1005 60355..60482 +
1622928797.4786465-CDS-F-serratus_M_contig1005:60854..60919	1622928797.4786465-CDS-F-serratus_M_contig1005:60854..60919	Fucus serratus male	CDS	F-serratus_M_contig1005 60855..60919 +
1690962576.4229262-CDS-F-serratus_M_contig1005:60854..60919	1690962576.4229262-CDS-F-serratus_M_contig1005:60854..60919	Fucus serratus male	CDS	F-serratus_M_contig1005 60855..60919 +
1622928797.489102-CDS-F-serratus_M_contig1005:61603..61797	1622928797.489102-CDS-F-serratus_M_contig1005:61603..61797	Fucus serratus male	CDS	F-serratus_M_contig1005 61604..61797 +
1690962576.4337096-CDS-F-serratus_M_contig1005:61603..61797	1690962576.4337096-CDS-F-serratus_M_contig1005:61603..61797	Fucus serratus male	CDS	F-serratus_M_contig1005 61604..61797 +
1622928797.4992602-CDS-F-serratus_M_contig1005:62428..62626	1622928797.4992602-CDS-F-serratus_M_contig1005:62428..62626	Fucus serratus male	CDS	F-serratus_M_contig1005 62429..62626 +
1690962576.4436944-CDS-F-serratus_M_contig1005:62428..62626	1690962576.4436944-CDS-F-serratus_M_contig1005:62428..62626	Fucus serratus male	CDS	F-serratus_M_contig1005 62429..62626 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1005:60355..62626+
coding sequence from alignment at F-serratus_M_contig1005:60355..62626+

protein sequence of mRNA_F-serratus_M_contig1005.154.1

>prot_F-serratus_M_contig1005.154.1 ID=prot_F-serratus_M_contig1005.154.1|Name=mRNA_F-serratus_M_contig1005.154.1|organism=Fucus serratus male|type=polypeptide|length=195bp
MDFATSPVEDFCSFDGGNESMEWGDGREDREGDGLPPGKASTSPGRRRRR
DSLAPKSPLRRSIAAFSKDVRRGATILDSDDSDLEDDAEYRAVDNLNASI
SVPSTTADRLGAVAAVADRGPDPHNLSFSITTTQMHGIADSDSSLELTGT
FTTPPEQAAASAAPAQAAPALACASDGGEGRGIDDATSDDRCGC*

mRNA from alignment at F-serratus_M_contig1005:60355..62626+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1005.154.1 ID=mRNA_F-serratus_M_contig1005.154.1|Name=mRNA_F-serratus_M_contig1005.154.1|organism=Fucus serratus male|type=mRNA|length=2272bp|location=Sequence derived from alignment at F-serratus_M_contig1005:60355..62626+ (Fucus serratus male)
ATGGATTTTGCCACTTCCCCCGTCGAGGATTTCTGTTCGTTCGATGGTGG
TAACGAAAGCATGGAGTGGGGAGACGGTCGAGAGGATCGGGAGGGCGACG
GACTACCACCGGGGAAGGCGTCGACCAGGTGACGACGTGTCGTCTCGTGG
CGATCGACCACAAAGTGGGTCTCCACTTGACAAAAGTTTTGTGACGGCGA
GCGGGAGGGGAGGCGTGTAGACCCGAACAAAAATATAAAAGAAAATTAGT
ACCTACAGTTCTCCTTGTTGCCCCGGGGTTGTTGGCCTATCCTCCCCCCC
CCCGCCTCTCGAACGCCTGCTCATTTACACTTTACACTTTACACTTTTCA
CTTTACACTGGCTTGTTTTTTTGCCCGAGCTCTACGGCCCCGCTTTCCTG
GTTGTGGTTGTGGTTGTGGTTCTGCTGCCGCGGTTCTGCTGACGCGCTTT
GGAATCTTGGAATTTGAAATTGATCGTTCGCCGCCAATTTTTTTTCACAG
CCCTGGCCGTCGGCGAAGGCGTGATAGTCTGGCTCCCAAGAGTCCGCTTC
GGAGGAGCATCGCGGGTAAGTGCAAATGTATAGTAGTTGAGTTACACTAC
GAACTCCTTCGAAATATTCAGCAATATTATATTTGTATAATCAAAATAGA
GGAAAGTACCGTGTAGAGCTGTAAAGAGGATATACTCAAATGTCGTACGG
GTGTATATAATATTTCTCGTATAGATTCGTGTGGTAACATACGTAAAAAA
TATGATGCGCATCGTGGAAATATTTCGTATTATAGTGTATATTATTTGCC
ATTTATAAGAGCAGTGCATAGTACTCGAAGGATAGCATATGATATGTATT
TTCTCGAATTAAGTATTTCGTGGACCCCCCCCCCCCCAAAGACCTCTGAC
TGTAGCTTTTGTACCCTGACTATAGTAATAATAAATTTATTAGTAAGACA
CCTCTTACAGTAATGTAGTATTAATAGTCTATTTATAGTTTATACAGTAT
AGAAATCTGAAGGTATACACGCCGTTATTTGGGGAAAATGGTTTCGAAAC
CTTTGGTAGGGATCATTATCAATGTCTGTTACTATCGCAAAAAAGGTCTA
CATGAGATGTTAAGGCGGGAAAAGTTGTAGGCGGGGGGAAGCCCTTTCTC
CTTACCATGATACTTTTACTTTTACATGGTCTTCGGAGGCCCTGTCGCTA
ATATCCTAACACCGCCCAAACTTTTTTTCTTTCTTTTTCTGTCCTTCAGC
GTTCTCCAAAGATGTCCGCCGTGGCGCGACGATTCTAGACTCCGATGATT
CTGACCTCGAGGACGACGCTGAGTACAGGGCGGTGGATAACTTGAACGCG
AGCATCTCCGTCCCGAGTACTACCGCGGATAGGCTTGGCGCCGTTGCAGC
TGTAGCGGATCGTGGCCCGGACCCCCACAATCTTTCGTTCTCGGTGAGGG
GCCCGTAGTTTGTAGAGGACTGGAGGCGGCACGGACACGGGACCGTGGCG
GTTTGGCGATTACGTAATACTGTCTGTACTATATATCATTTGACATCTGA
GTTGTTTTTTCATGTCATTTTTATGCATAAAGTGGTTATATCGTAATTAT
TTCGGGTATCGTGTTGACTGTGCTGTTGTACTGATACTGCACTATTAATA
GAGCCTTAAAGCTGTACCCGGGGAACCTGTGTTTTCCTCGGGTGGGTTGT
GCGGGAGTTCGTGTATCTTTTGGATGCGTTGCTTCGCGTGGGGAGAGGGG
AGGATCGCGCGATTAAACGCATGATATGTAAATTAGTTTGGTATACTTGT
ATTAATTCTCTTATGGAATGTTTTCGATGCTTTTTACCATGCATATTACT
GATTGTGTAAACCGATTTCCGCGAGATACACGCACACACCACATAAGCTT
GGTTTTTGAAAGAAAAACGCCTCGCTAACTGAATCATCCCCGAAACTTTT
TTGTTTGTGATTCTCAAGTGCGCTTGTCTATCGCTGCGTTCGGAAAAATG
AGACCTATCTGATGTCTGATCTCCTTGTTTTGTTATCTGCGTTTTGTGTG
TTATCCTGTTTCGTATCTCTGAAGATCACGACCACCCAGATGCACGGCAT
CGCTGACTCCGACTCTTCCCTGGAGCTCACTGGCACGTTTACCACCCCTC
CCGAGCAAGCCGCAGCCTCGGCTGCCCCAGCTCAGGCTGCCCCAGCTCTT
GCTTGCGCCTCTGATGGCGGTGAAGGTCGCGGTATTGATGATGCCACTTC
AGATGACAGGTGTGGTTGCTAG

Coding sequence (CDS) from alignment at F-serratus_M_contig1005:60355..62626+

>mRNA_F-serratus_M_contig1005.154.1 ID=mRNA_F-serratus_M_contig1005.154.1|Name=mRNA_F-serratus_M_contig1005.154.1|organism=Fucus serratus male|type=CDS|length=1170bp|location=Sequence derived from alignment at F-serratus_M_contig1005:60355..62626+ (Fucus serratus male)
ATGGATTTTGCCACTTCCCCCGTCGAGGATTTCTGTTCGTTCGATGGTGG
TAACGAAAGCATGGAGTGGGGAGACGGTCGAGAGGATCGGGAGGGCGACG
GACTACCACCGGGGAAGGCGTCGACCAGATGGATTTTGCCACTTCCCCCG
TCGAGGATTTCTGTTCGTTCGATGGTGGTAACGAAAGCATGGAGTGGGGA
GACGGTCGAGAGGATCGGGAGGGCGACGGACTACCACCGGGGAAGGCGTC
GACCAGCCCTGGCCGTCGGCGAAGGCGTGATAGTCTGGCTCCCAAGAGTC
CGCTTCGGAGGAGCATCGCGGCCCTGGCCGTCGGCGAAGGCGTGATAGTC
TGGCTCCCAAGAGTCCGCTTCGGAGGAGCATCGCGGCGTTCTCCAAAGAT
GTCCGCCGTGGCGCGACGATTCTAGACTCCGATGATTCTGACCTCGAGGA
CGACGCTGAGTACAGGGCGGTGGATAACTTGAACGCGAGCATCTCCGTCC
CGAGTACTACCGCGGATAGGCTTGGCGCCGTTGCAGCTGTAGCGGATCGT
GGCCCGGACCCCCACAATCTTTCGTTCTCGCGTTCTCCAAAGATGTCCGC
CGTGGCGCGACGATTCTAGACTCCGATGATTCTGACCTCGAGGACGACGC
TGAGTACAGGGCGGTGGATAACTTGAACGCGAGCATCTCCGTCCCGAGTA
CTACCGCGGATAGGCTTGGCGCCGTTGCAGCTGTAGCGGATCGTGGCCCG
GACCCCCACAATCTTTCGTTCTCGATCACGACCACCCAGATGCACGGCAT
CGCTGACTCCGACTCTTCCCTGGAGCTCACTGGCACGTTTACCACCCCTC
CCGAGCAAGCCGCAGCCTCGGCTGCCCCAGCTCAGGCTGCCCCAGCTCTT
GCTTGCGCCTCTGATGGCGGTGAAGGTCGCGGTATTGATGATGCCACTTC
AGATGACAGGTGTGGTTGCTAGATCACGACCACCCAGATGCACGGCATCG
CTGACTCCGACTCTTCCCTGGAGCTCACTGGCACGTTTACCACCCCTCCC
GAGCAAGCCGCAGCCTCGGCTGCCCCAGCTCAGGCTGCCCCAGCTCTTGC
TTGCGCCTCTGATGGCGGTGAAGGTCGCGGTATTGATGATGCCACTTCAG
ATGACAGGTGTGGTTGCTAG