mRNA_F-serratus_M_contig1004.145.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1004.145.1
Unique NamemRNA_F-serratus_M_contig1004.145.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1004.145.1 vs. uniprot
Match: D7FH15_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH15_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 3.670e-62
Identity = 112/194 (57.73%), Postives = 135/194 (69.59%), Query Frame = 3 
Query:  366 GSSIVEGLSSRDRHH---RQVARSTKRLLLAKPTPSEPITDPFAFVCDIARRPKFGHQYILCPSRSRRHRGEPIGLSVGPHWSGVLYTISMIAVVTLFLTRVVLN-DVAPWCQPAGVVCALITTALLLATAVTDPGIVVQGAEGGEGEGSEYCEECSIWRPDXXXXXXXXXVCILGLDHHCLWMGKWTGQHTVV 935
            GS  V       + H   R V+R ++ + +A P P EPITDPFAFVC++ARRPKFGHQY+LCP RSRR     +GLSVGPHW+GV+YTISMI V+TLFL RV++  +VAPWCQP  V C+++T   LLATAV DPGIVV+ AE  EG    YCEECSIWRP     XXXXX  I GLDH   WMGK  G+  ++
Sbjct:   43 GSGTVREXXXXXQDHTRDRAVSRPSRGIQVATPAPFEPITDPFAFVCEMARRPKFGHQYVLCPERSRRRGDRRVGLSVGPHWAGVIYTISMIFVITLFLVRVLIGPNVAPWCQPVIVACSMVTVVFLLATAVADPGIVVESAES-EGASCGYCEECSIWRPQGAEHXXXXXXXIFGLDHXXPWMGKCVGRGNIL 235
[Close]
BLAST of mRNA_F-serratus_M_contig1004.145.1 vs. uniprot
Match: A0A6V1ME69_HETAK (Palmitoyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1ME69_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 1.660e-18
Identity = 59/161 (36.65%), Postives = 81/161 (50.31%), Query Frame = 3 
Query:  474 TDPFAFVCDIARRPKFGHQYILCPSRSRRHRGEPIGLSVGPHWSGVLYTISMIAVVTLFLTRVVLNDVAPWCQPAGVVCALI----TTALLLATAVTDPGIV----VQGAEGGEGEGSEYCEECSIWRPDXXXXXXXXXVCILGLDHHCLWMGKWTGQHTV 932
            TDPF F+C     P  G+ YIL  +      G+P  ++VGPHWSG ++T  +I   T FL  +V      W +PA +         +TA L   A TDPGIV       A     +G  +C++CSI++P+         VCI G DHHC WMGK  G+  +
Sbjct:   55 TDPFYFICKRFGFPMLGNNYILRTTDD----GDP-RMTVGPHWSGTVFTTVIILSGTYFLAPLV------WGRPAALAATAFFFGCSTASLWLVACTDPGIVRRATAPAAAAAAADGLRFCDKCSIYQPEGAVHCNDCGVCIEGHDHHCPWMGKCLGRGNI 204
[Close]
BLAST of mRNA_F-serratus_M_contig1004.145.1 vs. uniprot
Match: A0A835ZD98_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD98_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.020e-6
Identity = 51/156 (32.69%), Postives = 71/156 (45.51%), Query Frame = 3 
Query:  477 DPFAFVCDIARRPKFGHQYILCPSRSRRHRGEPIGLSVGPHWSGVLYTISMIAVVTLFLTRVVLNDVAP----WCQPAGVVCALITTALLLATAVTDPGIVVQGAEGGEGEGSEYCEECSIWRPDXXXXXXXXXVCILGLDHHCLWMGKWTGQHTV 932
            DP   +C   R PK GH Y+L  +     R   + L++GPHW+GVL+     + VTL  T  ++    P    W +   V  A +T   L  T  +DPGIV Q A       +  C EC++  P     XXXXX          +WMGK  G+  +
Sbjct:    1 DPCRCLCSWLRAPKIGHNYVLARTPGSL-RSSKLLLTMGPHWTGVLFA----SAVTLGATVALIIQDGPQGTNWFKWFCVSGAGLTLLTLWLTGCSDPGIVRQPANADMD--ARMCPECAMMVPGTAEHXXXXXXXXXXXXXXXIWMGKCIGKQNM 149
[Close]
BLAST of mRNA_F-serratus_M_contig1004.145.1 vs. uniprot
Match: M4BFB6_HYAAE (Palmitoyltransferase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFB6_HYAAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.900e-6
Identity = 61/202 (30.20%), Postives = 82/202 (40.59%), Query Frame = 3 
Query:  441 LLAKPTPSEPITDPFAFVCDIARRPKFGHQYILCPSRSRRHRGEPIGLSVGPHWSGVLYTISMIAVVT-LFLTRVVLNDVAPWCQPAGVVCALITTAL-LLATAVTDPGIVV-------QGAEGGEGEGSE--------------------------------YCEECSIWRPDXXXXXXXXXVCILGLDHHCLWMGKWTGQ 923
            +LA+P  S   +DP A +C   +  + GH YIL   RS     +   L VGPHW GVL T+S++ + T +FL + V     PW      +    TT   L  T+ TDPGIV        +     E E +E                                +C+ CSI +           VCI G DHHC WM K  G+
Sbjct:   17 VLAQPVNS---SDPLACLC-CCKFKRLGHGYILY-ERSDGDGMKTTLLVVGPHWIGVLVTLSIVLLCTGMFLFQCVAT--MPWYNTLMTLGLCGTTLYYLFQTSCTDPGIVQPLQHKKDESLTQDESEATELEAEHVAIKTIAMESSVVRYAHDRRLRPTRRRFCDICSIQQDCSTDHCEDCGVCIAGHDHHCPWMSKCIGR 211
[Close]
BLAST of mRNA_F-serratus_M_contig1004.145.1 vs. uniprot
Match: A0A6G0X9B3_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9B3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.640e-5
Identity = 39/121 (32.23%), Postives = 52/121 (42.98%), Query Frame = 3 
Query:  474 TDPFAFVCDIARRPKFGHQYILCPSRSRRHRGEPIGLSVGPHWSGVLYTISMIAVVTLFLTRVVLNDVAPWCQPAGVVCALITTALLLATAVTDPGIVVQGA---EGGEGEGSEYCEECSI 827
            TDP    C    R K G  Y+L       H   P  + VGPHW GVL T+++I V T F       ++  W     +     T   L  T  TDPGIV +G+   +      S YC+ C +
Sbjct:   50 TDPCRCFCCFGFR-KIGQNYVL-------HESNPF-IIVGPHWIGVLITLTLIVVSTYFFIDQQCRELEAWYTLLSLALCFATIFFLFKTTCTDPGIVPRGSLHTDPALVSMSSYCDICDV 161
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1004.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FH15_ECTSI3.670e-6257.73Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A6V1ME69_HETAK1.660e-1836.65Palmitoyltransferase n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZD98_9STRA2.020e-632.69Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
M4BFB6_HYAAE2.900e-630.20Palmitoyltransferase n=1 Tax=Hyaloperonospora arab... [more]
A0A6G0X9B3_9STRA7.640e-532.23Palmitoyltransferase n=1 Tax=Aphanomyces euteiches... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1004contigF-serratus_M_contig1004:219688..230683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.9
Seed ortholog evalue5e-53
Seed eggNOG ortholog2880.D7FH15
KEGG koko:K16675,ko:K18932
KEGG Pathwayko04391,map04391
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-26_003120.1
EC2.3.1.225
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size1497
Cds size885
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1004.145.1prot_F-serratus_M_contig1004.145.1Fucus serratus malepolypeptideF-serratus_M_contig1004 220145..222593 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928795.5938637-UTR-F-serratus_M_contig1004:219687..2201441622928795.5938637-UTR-F-serratus_M_contig1004:219687..220144Fucus serratus maleUTRF-serratus_M_contig1004 219688..220144 -
1690962575.5433135-UTR-F-serratus_M_contig1004:219687..2201441690962575.5433135-UTR-F-serratus_M_contig1004:219687..220144Fucus serratus maleUTRF-serratus_M_contig1004 219688..220144 -
1622928795.6827667-UTR-F-serratus_M_contig1004:222593..2226121622928795.6827667-UTR-F-serratus_M_contig1004:222593..222612Fucus serratus maleUTRF-serratus_M_contig1004 222594..222612 -
1690962575.5852365-UTR-F-serratus_M_contig1004:222593..2226121690962575.5852365-UTR-F-serratus_M_contig1004:222593..222612Fucus serratus maleUTRF-serratus_M_contig1004 222594..222612 -
1622928795.709098-UTR-F-serratus_M_contig1004:230547..2306831622928795.709098-UTR-F-serratus_M_contig1004:230547..230683Fucus serratus maleUTRF-serratus_M_contig1004 230548..230683 -
1690962575.5953147-UTR-F-serratus_M_contig1004:230547..2306831690962575.5953147-UTR-F-serratus_M_contig1004:230547..230683Fucus serratus maleUTRF-serratus_M_contig1004 230548..230683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928795.631941-CDS-F-serratus_M_contig1004:220144..2202711622928795.631941-CDS-F-serratus_M_contig1004:220144..220271Fucus serratus maleCDSF-serratus_M_contig1004 220145..220271 -
1690962575.557334-CDS-F-serratus_M_contig1004:220144..2202711690962575.557334-CDS-F-serratus_M_contig1004:220144..220271Fucus serratus maleCDSF-serratus_M_contig1004 220145..220271 -
1622928795.647299-CDS-F-serratus_M_contig1004:220923..2209741622928795.647299-CDS-F-serratus_M_contig1004:220923..220974Fucus serratus maleCDSF-serratus_M_contig1004 220924..220974 -
1690962575.5668464-CDS-F-serratus_M_contig1004:220923..2209741690962575.5668464-CDS-F-serratus_M_contig1004:220923..220974Fucus serratus maleCDSF-serratus_M_contig1004 220924..220974 -
1622928795.6623726-CDS-F-serratus_M_contig1004:221886..2225931622928795.6623726-CDS-F-serratus_M_contig1004:221886..222593Fucus serratus maleCDSF-serratus_M_contig1004 221887..222593 -
1690962575.5768378-CDS-F-serratus_M_contig1004:221886..2225931690962575.5768378-CDS-F-serratus_M_contig1004:221886..222593Fucus serratus maleCDSF-serratus_M_contig1004 221887..222593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1004.145.1

>prot_F-serratus_M_contig1004.145.1 ID=prot_F-serratus_M_contig1004.145.1|Name=mRNA_F-serratus_M_contig1004.145.1|organism=Fucus serratus male|type=polypeptide|length=295bp
MSPPHDKGALAMLPLLAPHEQQSSKGSNAAGYKGKNKGIIFRERRIQQQQ
EEEEEQERTEATTPFFDSEDGSSIVEGLSSRDRHHRQVARSTKRLLLAKP
TPSEPITDPFAFVCDIARRPKFGHQYILCPSRSRRHRGEPIGLSVGPHWS
GVLYTISMIAVVTLFLTRVVLNDVAPWCQPAGVVCALITTALLLATAVTD
PGIVVQGAEGGEGEGSEYCEECSIWRPDGAEHCDECGVCILGLDHHCLWM
GKWTGQHTVVQAVQRIVDPVSVVLDGGVALSEYPLGGTLERFGF*
back to top

mRNA from alignment at F-serratus_M_contig1004:219688..230683-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1004.145.1 ID=mRNA_F-serratus_M_contig1004.145.1|Name=mRNA_F-serratus_M_contig1004.145.1|organism=Fucus serratus male|type=mRNA|length=10996bp|location=Sequence derived from alignment at F-serratus_M_contig1004:219688..230683- (Fucus serratus male)
ATCGATCCATCGATTGACTGTGGTTCCGTATGTACAGGTATCTCTTATAA
AAGGACAAAGCTGAAACGCAGGAGCACATTGGAAGGAGAGATCAAGACTA
TCGCTAGATCGCTAGGTATATACCATCTGTGGGAAGGTGAGGGTATTCTC
TATCGATTAAAATGTTGTGTGAAACTCGCTGCTTCGACTCGCTTTCAAAA
CGGGCACTCAATCGAGAGGCGTTTTGTCTGATGGTTAGTTGCTACACGGC
AGACTGAGAGATAGAGAGAAAAATCTGAACCAATTCAAACCTCTTATTTC
GAGCATCTACACCGGGAATGGTACCAAATGCATGCCGATCACTTTCAGCA
GAGTATGGATCAACCGGGCATTGTTGCCAATCCTGCTCGTGGTCAGCTGA
AAAGGAAAAAGTTTTTCCTCCTGTCCCCGTTCGCGCTTGAGAATTTGGTC
TCGCGAGACGGGATCGGCCGTCCCGTCCCGCGTCGGCCCGCTCATTCTCC
CTACTCAGGCAGAATCTGGAGCTTACCCACGGGATTCCTCCCGCTTTCCG
CGTTGGCGTCCAATTACATCGTCAACCGCCAGCGGGTCAGTCCCGAGTTA
GTCGGGTTACGCAGTCGTGTACCGATGGCGCGTTCTCTGCCGAGAGTCCG
CCGGCACAGGGCCATCAGTCCTCAAGGTCCGGCTGCTGCCTTTCCAGGTG
TCACTGACCAACTGACCAACTACGTGCGCCTTTCTTTTCCAACTCCCACT
AATGTTATGTACAGAGTAGTCGATATTTATGATACAGAAAGCATCAGAAG
AGGTTACTGTAACACGACTCGATCAACGATGCTGTAAACATGAACAACAG
TAGAGTGGAGTGGAGTACTGTACCAGGTACACGGTAATCAGTGTTACTGC
ACACCAGATAAACTGCTGCTGCTGCAGAGCGATTCGTGGAAGAAATTAAA
TTTGCACTTTCAACGCGTTGTCCTGTCTTGTACAGTCAGTTATAATATTC
CCGTAATTACAATTACAGCAGGCTGGCTCTATAGTACGCTTGTCGTCTCC
AAGGGGGACGAAGAGGCCTTCCTCTCCCAAAATCAACATTGCGAGAAAAT
CCCCGCGAGGTACTCGAATAACCACTCGAAAACGAGAAAAACCTGTAGTA
CCCAATCCGCGTCACGCCGATATCGTTGGGATACGAACCCTAGCCTCTAT
TTTAATAACTGCCTCCTGTCTGGAGTACCGCCGGCATCTCAGAATCTGAA
AAACACTATTTAGGTAGCCTGATGAGCTCACGTGGTACGTGAAAACCAAT
CACGCTCACGCTATGCAGTACTTGAAGAGAGCTTATACAGTACAGTACAG
TACAGACAGTATTATTATTAATAGTTGCACAACCGACGTTGCTCCATCAG
TCCTTACGCCCAGTACAGCAGTATTATTATTAGTACAAGATAGTACTCGT
ATTCTGGTATACCATTTCATACTACCAGTATAAGATAGGGTAGCTATCGC
TATACGCTCGCTAAAGGATAGTTTGGTAATTATCGTCAGCTGTACACAGG
TGTTGGTTTTTAATCAAACAGGGCAAGTAATTTGAAGTTCCACGTTCCTT
GTTCCCTGCCCTTTTTTTTCATCTAAAACCCGCCCTGAACACAGGTGTTG
GTTTAACCAAACAGGGGGGGCACATCACGAAGAGGAACATATTTTGATAC
ACCCGAGCTCAAATTGATACAGCACACAGATTAGAAGCTCGCTAAACGCT
CGCAATTACTATATAACAGTACCTCGCTGTAGCTATCTCACCAGCAAGCC
CCAGGGCTTGGCTAGTCTTTGGATCTTCCGGCCTCGGCAGCCTAGCCTCA
CAAAGCATTTCTATTAATAGTTTCAAACCTCTGCCCAGACGCTTCGTGGG
TTGACCATTATCATTACAGGGAAACATAACATTCAACCGTTCGGACTAAT
ATGTAGAGAAACAGACGCAAACATGGAGTATTTTGTATATACCTGGTATA
GAGCCATGTCCACGAAAGGCGTTTTTTTTTTTTTTCATGAACACATCTAG
ACCTTCTGAGCACCCCCCAGCAGCAGAGGAAGAAAATGTCAAAACGTTTA
GTTGGGATCAGTTGTTTGACTTAACTTCCTCTCCAGGCCACTTGACGTGT
TACGATACAGTATAAATATTAATAGTACACCACGCTATACTGGCAGTGCG
TTTTTTTTGAGTACATGAAGCATGTCTAACATGTGTGTTGTGTTTTCTTC
CCATTGTTCATTGGACGTCACAGTCCCTGTAATTTTTGTCATGTTCTAAC
ATAAGTTAATCGACTAAAATTTTTAGTAAGAAACTAGAGTAGTAATATTA
ATAATTAGTAGGGATGCCTCGTCCAGCGTGCTGTTTGCGGTACTATCAAC
GTCATCACTTGTTTAAAGAAAAATCTGAACTAACGCATCTCGACCTTCTG
AGCACCCCCGAGTCGGGGGGGAAAATGTAAAAACGTTTAGGTGGGATCAT
AAGGTGCAAAGACAAAATCTCTTCATGGCATTGAAACGGGTTCCCCGATG
GTATTATAGTAACATTAGGTCAACAGTATAATGTCGGGGAGAAGCCCACT
GCTGTTATACTTGTACACTTCCATTAATCGCCATGCAGAGGCACCAAGAG
GTTTTGTCTTTGCAGCCTATGAATCCCAGTTAAGTGTTTTGACATTTTCT
CCTGGACTGGGGGGATGCTCAGAAGGCCTACTTGTAGACGCGTTCATGTT
TTTCTTTAAACACACAAAAACGTTATACGTACAACGATTACTCTCTTCTC
TCGTCTTAGTCCTCCAGCAGTACAATATTAATAGTGGTATTAGTACTGCC
GGTACTTCAACATGCTATAACCACTTCATACTATTACAAGTACTTGTCGT
AGTAGGTGTGGGAAAAAGAGGCGTATATTAATTGGTCCATAGTGACCTGC
CAGGCAGCACTCGCTCGGAACTACCTTGAGGTCTACTGGCCCTGTGCCGG
CGGACTCTCGGCAGTGAACGCCATCTTTACGCAATTGCGTGACCACATAA
ACTCGGGACGGACCTGATTGCGTATGACGGTTTTAAATAAATAAATGGAC
GCCGCTGCGGAACTCGGGAGGAATCCCGTGAGTAAGCACCAGATTCAGCC
TGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACTGCCGAACCCGTT
TCGCGAGACCAAATTATAAGGCGCGAACGAGGACAGAGAAATATTCATTT
TCCCTGTTGAGCTGACCGCGAGCAGGATCGGCAACCTTACCCGGTTGATC
CATACTATTGCTATATTGTGACCATATACACATCATTTACATACTTGCAA
GCTCCTTCATTTGGTGCTCTCTCGGTCGTTGAAGGAAAAATCTGAACTCA
TGTAGACCTTCTGAGCATCCCCCAGTCAGGGGGGAAATAGTCAATAGGTT
TATTTAGGTTGGATCATATCATGAGGCTGCAAAGACAAAAGAGTCCCGCG
ATGGTATTAATATTTAATATTTATTAGTAACATTGGGTCAACAGTATCAT
GTCGGGGATGTTTTCTGTGGCACAGTAGTTCATCTTCCAAAATCCATTAC
AAAGCTCCGCAGTGACGCCATCAATTGCCGACTCTGACGGCAATCTATGC
ATATCTCCGTCTACGTATGTTTGTAGGTTCTTCTCGCTGTGGTTCGGGCT
GGTGCGATTGCTAGTCCGAAAGCATCTAATAAAGCTTCTGAGCATCCCCC
AGACAGAGAGGGGAAGAAATGGTTGACCCCGAAATTGTTTAAAGAAAAAT
GAGAAAATTTTCTCAATCTCTACGTCATCTACGGGCGAAATTTTGCTGTT
AATTGTGTAAAGAAAAATCTGGACGCATCTAGACTATACTATTATACTAT
ACTATACTATACTATACTATACTATACCCCAGTCAGGGGGGAAAATGTCA
AAACGTTTACCAGGTAGGTGGGATCATATCATAGGCTGCAAATACAACAC
CTTTTCATGGCATTTAAACGGGTTCCCCGATGGTCGTAGCATTTAGGTCA
ACATGTAGTATAATACCGGGTAGAAACCCACCGTTATGCTGTTGTACACT
TACTTTGTTATGCTGTTAATTTGTTCGAGGAGTAGAGTAGCCTACCGGAA
AAGAACGTAAAATGACCAAAAACGGATGGAAGCTGAGCAAAGTAGCTATA
ATCGGGAGTACCCGGTCGCTTTTGGCCTAAAACAGGAGAAAGTGGGTGTT
GGCCAATCAGATACGGCCAACAACACTCTCCGCCGCTATTGTTTTCAGGT
ACACCCGTTTTTGGCCAAAAAAGCACCGGGAGCTCCCGTTTTTGGCCATT
GTCAACATTATAATGCCGGGTAGAAACCCACCGTTATGCTGTTGTACACT
TTCTTTGCTATGCTGTTAATTTGTTCGAGTAGTAGAGGAGCCCACCGGAA
AAGAACGTAAAATGACCAAAAACGGATGGAAGCTTAGCAAAGTAGCTATA
ATCGGGAGTACCCGGTCGCTATTGGCCAAAAACAGGAGAAAGTGGGTGTT
GGCCAATCAGATACGGCCAACAACACTCTCCGCCGCTATTGTTTTCAGGT
ACATCCGTTTTTGGCCAAAAAAGCACCGGGAGCTCCCGTTTTTGGCCATT
GTCAACAGTATAATACCGGGTAGAAACCCACCGTTATGCTGTTGTACACT
TACTTTGTTATGCTGTTAATTTGTTCGAGTAGTAGAGTAGCCCACCGGAA
AAGAACGTAAAATGACCAAAAACGGATGGAAGCTTAGTAAAGTAGCTATA
ATCGGGAGTACCCGGTCGCTATTGGCCAAAAACAGGAGAAAGTGGGTGTT
GGCCAATCAGATACGGCCAACACTCTCCGCCGCTATTGTTTTCAGGTACA
TCCGTTTTTGGCCAAAAAAACACCGGGAGCTCCCGTTTTTGGCCATTGCC
CTTTTGTATTTGCAGCCTATGAAACGGCACCACCCCCACAGATAGGGATA
GTTTTATAAGGACCGGCCAATCACAGACCTCCCTGGCATGGAAATACTGT
CAGATTTGTCCAATGAAAGACGATTTTTGTAGAGATTTTAAAAGGATTAT
TGGTGGACGCGTGCATTTCACACAGTCCCATGAGATTGATCGTCGATAGC
ACCCACCTTCTTCTGTAGATTACTCGCTTACAGGTCTACCATCGGTGGAG
CCCTTTTACTTGAAAATATATAGGCAGCTCACACACACGAACGCGCCGGC
GGCAGCATCGATGAACCATGCTAGTGTGGCGGTACATCCCCACTATAGTG
TGTGGTTGGTTGCGTTTCTTGGAGCCTGTGGCCTGTCGTTGAGGTCACGC
CAGTATTTTCTCAGCATGTACCCACGGCGGCGGTGATTGTACCTAAACAG
CCAAGCCAAATCATTCATAGTTCAAGGGAGGCAAAAATGTTTCGTCGGCG
ATTCCGCATTCCATACATCTCTCCGTGGAGCTCCTCTCCTTGTTGGCGAC
ACAGCAGAAGAAGTGGTATCACCATCTGCAAGTCAAGTACAGAGCTTGAG
GACACATTACTATTAATATAATAATACATACCATCGTGCACTGTTCTGTA
TATACCTATGTAGTCTACAGCAGTTGGTACTATTAATACATTATTTTATC
TAATTTTTGTACTGTGCGTGATGTACAAAAACTGTTTTGTTAGAGTTACG
TAGCGAATTCTTGCCGGACTGTGCTCGTGTTTGAAGAAAAAACAGAACGT
ACCTAGACCTTCTGAGCATCCCCCAGTCAGGGGGGGGAAATGTGTTCATC
TACCGACAATGACGAGGGTAAAACCTCCACACACATACGTCGGTGTGTGA
GTTTGTAACACCCCAATATGTCAATATGTCCTTCTCTCTCTCTTTTTTAC
AAGAAAAGGCTTCTTCAACATTTTTACGCGCTTCGCGCGAATAATATAAT
TATTTATAAAAACCTCCTTATGTATGGAATCGGAGCCTATGAAACAACAA
TTTTAAACACGTCGTGGAAAGTCCCTACGGACTTGTCGTTGAACGTAAAT
GTATTTTTCTTACTCCAATTACAATATTGTAACGTTTCTTCTGTTCTATT
AACCCTTCTGGCCCTACACGTGCGTTTACTGATCATTGCACTGATCATTT
TTTTTGTTTTTGTTTTTGTTTAGCCCAGTCTATTCGTGTAAGGGATTTAA
AACAAAATACCCGAACTCCACATGCAAGGAGTTGTATTGCACCACAGAGC
AACGCTGTGCCTGCAAAGAGGGACAACAAAAGACACTCAAATGAGGAATA
TATAAAAAAGGGAAGTCATTTCATTAGCACGTCCATTGCCTGGGCCGGCA
CCCCACATCCATACTTGGGACAAAACCTTTGAACCCATATGCATGCTCAA
AAGTTGCTGTCTCGATATCATGAAAAACAACTCCTATATAATATCAGGAG
CAAAACGAACGAATCACACGTCCTCCGAACCTCAGCGTACTGTACACACG
AATTACAGCAACCGCGCCGTTCTACAGCACACAAGCAATGGTGGAGCCCA
CATCTGCGAGCCAGAACAACCCGTACAAGCTATAGTCTATATCCTATCTT
GCCACTGTATACAACTGCGATGTACCTAGTATGCGGAGTATACTCTTTTA
GGGAGAATGCCTGGACCCACAGAGGAGGCCAATCCATGTTCGTTTGTGTA
TAAAGAAAAACCAAATAGCGCCTATACCTTCTGTTAATAGCTTCCTCCAG
TCAGGAGAAAAATTGTCAAAACGTTTAGGTGGGATCAAAGGCTGCAAATA
CAAAAAAAAAACTAGAACGTGCCTATACCTTGTGAGCATCCCCCAGTCAG
GGGGAAAAAAATATCTCATGGGCTATTGTTGTGCTAAATATTGTAAAATA
AGGAGCGCTAGTGAGTCCGAAGGGATCACTTTGGGCGGGGCCAGAGAAGT
ACAGAAGTACAGTTTGCTAGTCTGGCCCTTCAAAGCGCGCTCACTGATCA
TTTGAACCCTCTCCACTGGTCATTTGAGAATATGTTGAAAATAGAGTTTT
AGCATGCATGGAACATCTAGGGATAAACGCATAACAACCTCTGTCTGCGA
CAGCACGACCACTCCACAACCACTCCACAACCCTTCTTGTACCCTGAGAG
ACGTCACCAGCTTGTCGCGGGCCGCCTACACGCCCCGTGGGTCGAGATCG
TAAAGCTACCGTTAGCAAAAAGTAGTACATTTTTGTTTTGCATTAAGTCC
GTAGGGACTTTTGGCCGTTCTATTTCATATCTATTCGGTGTGTTTGTATT
TCCCACTGTTTATAAGTGTTACATTTTTTATAGGACAGCAGGAGGAGCAA
GGTATAGGACAGTTGTGATAAATACATAGACTAATAGCGGTATGGGTTAA
GGATTGAAACAGCATAGGGACATACAAGACCACCATCGTAGATATCTTGA
ACATGACATAATCCAGAAAGTACGAGACACCGGATTTCATCTGAAAGTAG
ACGGAGCACCGAAGAGCAGTCACTAGTGGGAGATCGCACAAGGAAGTAAA
AGGCAAGCAAGTGGGTATGGTCCCCACGTGTGCGGTGTCAGGGCTACGGC
TCCCAGATACTCCTCATGCAGTAAAAAACCCACGGTCCACGCGTTTAGAC
CGGAAACTCAGAAGATACGGAGAAATATCTGGTGACCAACGAATGACAAG
CATGTTCTGTGCCTCAAACAGATCCATCCATAAATTCCTAAAAAGTCCTC
AAGAAAGCTTCAGCTTCGAAGAAGCCACTCCATAAAACTTGATCCAGAAA
AATAGACATCAGTTGTTGTTGGATGTGTCAAGTTAAACCCCTTTGACTGC
AATTGGTCATGCTCCGAGGAATGATCGGAATGATTGGAATGATCGCCGGT
CGCCAAGCCTCGAAGAAAGAACGCCAAGGCCTGGCGACCCACGCTCCCCA
GATCATTTCAGGCGCTATTCAGCACCATCTCCAGAAGCCTCAAAAGTGTT
CAATACTAATGTTTCTGCTTTTTATCCCCGACCCCGTGTTTTGAAAAAAA
CCTCTCGGTACAAAATAACAGGATCTCGGCGTGCGCGGGCATGTCGCCGC
CACACGACAAAGGCGCGCTCGCCATGTTACCTCTCTTGGCCCCCCACGAA
CAACAAAGCAGTAAAGGCAGCAACGCCGCTGGTTACAAGGGTAAGAACAA
GGGGATTATTTTCCGAGAGAGAAGGATTCAGCAGCAGCAGGAGGAGGAGG
AGGAGCAGGAGCGCACCGAAGCCACCACGCCTTTTTTTGACTCGGAGGAC
GGGTCGTCAATCGTGGAAGGCCTCAGCTCCAGAGATCGGCATCACCGCCA
AGTAGCCAGATCAACGAAGAGGTTGCTTCTGGCCAAGCCGACACCCTCTG
AGCCCATCACAGATCCGTTCGCCTTCGTCTGCGACATCGCCCGCCGACCG
AAGTTCGGGCATCAGTACATCCTCTGCCCGAGCCGGTCGCGACGGCACCG
GGGAGAGCCGATCGGCCTCAGCGTGGGGCCCCACTGGTCGGGCGTCCTTT
ACACGATCAGCATGATTGCGGTGGTGACGCTGTTCTTGACGAGGGTTGTG
CTGAACGACGTGGCGCCCTGGTGCCAGCCGGCGGGCGTGGTCTGCGCTCT
CATCACCACGGCCTTGCTGCTGGCGACCGCCGTGACGGATCCTGGGATAG
TGGTCCAGGGCGCGGAGGGGGGGGAAGGCGAGGGATCGGAGTACTGCGAG
GAGTGCTCGATCTGGAGGCCGGACGGCGCGGAGCACTGTGATGAATGGTG
AGTACGAGACCGCCCGAGAGGAGCACGGAACGCGATTTGGTGTGGGGTTG
AAGTGTAGAGCGTACGAGTTTTGCGGCTCTTGTGATCCTAACCCCATCTG
GGTGCAGTACAGTATTAATAAATGATACCTCGCATCGCGCTCGCGTACTG
ATATTAATATTAATAGCTTTCCAAGATTGTAACTGTAACTGATGACAGTA
GAGTAGAGTAAAGCAACAACCAACAACCTTCGCTCTTCTTGGCACCGGAC
TGCAGCATGCCGATAGTTTCTTATCCTTTCACAACGGTCCTACCTTTTTT
TACCCCCCTTGCCATTGTTCCCTTGTTGTTCTTTAGTTGATATAATGTTA
ATATTTAATATAATAGTCAAAATTACCACAGGGAGGAGGAGGTAACGTGA
CTGGTGTTTTTAGACTATAACCGTGTGACAAATATACGACGCAAACATTG
CTGGGGTGTTTTGAAGTCATTTTGAAGTCATTTAGAAGTGAAGTGATCAT
AATCACCATTCTTGTTCTCTTCCAGGTCGAATAGAATCGAATCGAATCGA
ACCGAATCGTCTTTTGCTGTTGCTCCCGGGGGGCTAGGCTCTTCTCAAAT
GTGTGTTGTCATATTTCGGATTTGTTCGTGCGGAGCTGGTGCGCCTGACC
GTCAAAATTTCGCGTAGAAGTTGGGGTTTCCGAGGCTTCTGTCCGCACAT
CGCGTGGAATCGTAGCCTGCGTTTGGGGCAGTTCCTTAGCCGCCGAGGAA
ACCGCGTGTCAGGCAGTATATCTAGCTCTGTAACCGTGCGCAGTGTCGCT
CCTCGAGCTGAGATATATAATAGTGTTGATACCACTCGCCCTTGTCGTTC
TTTCGCCCTACCCCTGTTCCTGCTGCTGTATTGTGTATTACCTTATGTAT
TGTCTAAAGTGGGGTTTGCATACTCGGGTTGGATCATCACTGTCTCTGGA
TGGGCAAGTGGTGAGTGGACCGTTGAGGCCATAATTTATTACGTGTATCT
TATTACTGTATCTATTTCTGTATTTATTACTGTCTATTCCTGTATTTATT
ACTGTCTATTCCTGTATCTATTTCTGTGTCTATTACTGTATCTAATACTG
TATCTATTATTACTGTAGTTATTTCTGTATTTATCACTGCATCTAATACT
GTATCTATTACTCTAGTTATTTCTGTATTTATTACTGTGTCTAGACTATA
CCTGTAACTATTTCTCTATCTATTATAGTACCTATCAGTGTTTATATTAC
TGTATATATTATTGTATCAATTTCTGTATCTACTCTGTTATTATAGGTGT
CTCTGGCCGACGAGGCAAACGGCTCCGTGTGTAACGCGAACGTAGATAGA
AGCGAATCAAGTAAGGCTACTGTAACCCGTATTCGCTTGCCGAAAGTTCA
AGTGACGAGAATGATCTTGTTGGTTGTGAGCTCTCAGCGACGGCCTCACA
CCCGCCTCCCCCTCCCCTCCCCACCCTTAGAACTATATATGTCCTGTCAT
GTCCTGTCCTTTCCTTTCCTGTCTTTAGAGGTGTATGTATATGCATCACA
CGAGGCCTGAAAACGAAAGGTATCCTCCCTCTGTGCGTCTCTGCTGCCGG
TGCACAGCGTAGGACGGGGCAACATACTGTGGTTCAGGCTGTTCAACGGA
TCGTGGATCCTGTTTCTGTCGTTCTTGATGGTGGCGTCGCCTTATCTGAA
TACCCGCTAGGAGGGACGCTTGAACGCTTTGGTTTCTAGACTTAATTTTT
CTGTCAATCCTGGAAGAACTGTTGAACGCTTTATTAATACAATAGGTTGT
TTGGGTCATGGCATCTTCCTATGAAATCGTTCTGAAGACATCGAAGACGC
CTGGGTGCTCCAACAGCATAGCCGCTTCTTCTTCTGTGGGCGCTGGTTCG
AGGGCTCACGAACTGATCGCCGGCGCGACTGAAATGTGATGCGCTCTCGC
GATCAATACATGTACCTCCTTTAGCTATCATGTCGTTTTGTTCGGGCGGT
GAGCGAGTACACCGTCATCTTGGAACAATGTACATCGTCGCATATGGTTG
CAGTGCGTCTCTTACGCGTTAACGCCGGAATTCAATACGAAACCCCCGGA
CTTTCCCCTGGACGTCCTTTCCGTTGACATTTTTACGGTGCGGTCCCTTG
ATAATTGGCTCTCATCGGCACCGTACAAAATACCTGATACTGTAAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1004:219688..230683-

>mRNA_F-serratus_M_contig1004.145.1 ID=mRNA_F-serratus_M_contig1004.145.1|Name=mRNA_F-serratus_M_contig1004.145.1|organism=Fucus serratus male|type=CDS|length=1770bp|location=Sequence derived from alignment at F-serratus_M_contig1004:219688..230683- (Fucus serratus male)
ATGTCGCCGCCACACGACAAAGGCGCGCTCGCCATGTTACCTCTCTTGGC
CCCCCACGAACAACAAAGCAGTAAAGGCAGCAACGCCGCTGGTTACAAGG
GTAAGAACAAGGGGATTATTTTCCGAGAGAGAAGGATTCAGCAGCAGCAG
GAGGAGGAGGAGGAGCAGGAGCGCACCGAAGCCACCACGCCTTTTTTTGA
CTCGGAGGACGGGTCGTCAATCGTGGAAGGCCTCAGCTCCAGAGATCGGC
ATCACCGCCAAGTAGCCAGATCAACGAAGAGGTTGCTTCTGGCCAAGCCG
ACACCCTCTGAGCCCATCACAGATCCGTTCGCCTTCGTCTGCGACATCGC
CCGCCGACCGAAGTTCGGGCATCAGTACATCCTCTGCCCGAGCCGGTCGC
GACGGCACCGGGGAGAGCCGATCGGCCTCAGCGTGGGGCCCCACTGGTCG
GGCGTCCTTTACACGATCAGCATGATTGCGGTGGTGACGCTGTTCTTGAC
GAGGGTTGTGCTGAACGACGTGGCGCCCTGGTGCCAGCCGGCGGGCGTGG
TCTGCGCTCTCATCACCACGGCCTTGCTGCTGGCGACCGCCGTGACGGAT
CCTGGGATAGTGGTCCAGGGCGCGGAGGGGGGGGAAGGCGAGGGATCGGA
GTACTGCGAGGAGTGCTCGATCTGGAGGCCGGACGGCGCGGAGCACTGTG
ATGAATGATGTCGCCGCCACACGACAAAGGCGCGCTCGCCATGTTACCTC
TCTTGGCCCCCCACGAACAACAAAGCAGTAAAGGCAGCAACGCCGCTGGT
TACAAGGGTAAGAACAAGGGGATTATTTTCCGAGAGAGAAGGATTCAGCA
GCAGCAGGAGGAGGAGGAGGAGCAGGAGCGCACCGAAGCCACCACGCCTT
TTTTTGACTCGGAGGACGGGTCGTCAATCGTGGAAGGCCTCAGCTCCAGA
GATCGGCATCACCGCCAAGTAGCCAGATCAACGAAGAGGTTGCTTCTGGC
CAAGCCGACACCCTCTGAGCCCATCACAGATCCGTTCGCCTTCGTCTGCG
ACATCGCCCGCCGACCGAAGTTCGGGCATCAGTACATCCTCTGCCCGAGC
CGGTCGCGACGGCACCGGGGAGAGCCGATCGGCCTCAGCGTGGGGCCCCA
CTGGTCGGGCGTCCTTTACACGATCAGCATGATTGCGGTGGTGACGCTGT
TCTTGACGAGGGTTGTGCTGAACGACGTGGCGCCCTGGTGCCAGCCGGCG
GGCGTGGTCTGCGCTCTCATCACCACGGCCTTGCTGCTGGCGACCGCCGT
GACGGATCCTGGGATAGTGGTCCAGGGCGCGGAGGGGGGGGAAGGCGAGG
GATCGGAGTACTGCGAGGAGTGCTCGATCTGGAGGCCGGACGGCGCGGAG
CACTGTGATGAATGTGGGGTTTGCATACTCGGGTTGGATCATCACTGTCT
CTGGATGGGCAAGTGTGGGGTTTGCATACTCGGGTTGGATCATCACTGTC
TCTGGATGGGCAAGTGGACGGGGCAACATACTGTGGTTCAGGCTGTTCAA
CGGATCGTGGATCCTGTTTCTGTCGTTCTTGATGGTGGCGTCGCCTTATC
TGAATACCCGCTAGGAGGGACGCTTGAACGCTTTGGTTTCTAGGACGGGG
CAACATACTGTGGTTCAGGCTGTTCAACGGATCGTGGATCCTGTTTCTGT
CGTTCTTGATGGTGGCGTCGCCTTATCTGAATACCCGCTAGGAGGGACGC
TTGAACGCTTTGGTTTCTAG
back to top