mRNA_F-serratus_M_contig1002.129.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1002.129.1
Unique NamemRNA_F-serratus_M_contig1002.129.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A6A5LDC5_LUPAL (Uncharacterized protein n=3 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LDC5_LUPAL)

HSP 1 Score: 90.1 bits (222), Expect = 2.650e-20
Identity = 56/103 (54.37%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLG--RKVRSSARIDYVPALCTHRPSHLPIECFGEDSGPELE-RFAA 300
            MGGGAWPFLVGG ICLVNSVNERD  LL S                Y +      +  G   K  SSAR+DYVPALCTHRPS LPIE  GE  G     RFAA
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTS----------------YVEIIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGLRRRGRFAA 87
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BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A0R0GH50_SOYBN (Uncharacterized protein n=1 Tax=Glycine max TaxID=3847 RepID=A0A0R0GH50_SOYBN)

HSP 1 Score: 96.3 bits (238), Expect = 3.090e-20
Identity = 65/105 (61.90%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLGR----KVRSSARIDYVPALCTHRPSHLPIECFGEDSG-PELERFAA 300
            MGGGAWPFLVGG ICLVNSVNERD  LLNS  YV   L   G   R T A     + L R    K  SSAR+DYVPALCTHRPS LPIE  GE  G    ERFAA
Sbjct:  240 MGGGAWPFLVGGAICLVNSVNERDLSLLNS--YVEVTLH--GQLLRGTMAIIAI-VGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGLRRRERFAA 339
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BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A072TUX5_MEDTR (Uncharacterized protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072TUX5_MEDTR)

HSP 1 Score: 92.4 bits (228), Expect = 4.470e-20
Identity = 57/103 (55.34%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLG--RKVRSSARIDYVPALCTHRPSHLPIECFGEDSGPELE-RFAA 300
            MGGGAWPFLVGG ICLVNSVNERD  LLNS                Y +      +  G   K  SSAR+DYVPALCTHRPS LPIE  GE  G     RFAA
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLNS----------------YVEIIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGLRRRGRFAA 87
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BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A3Q7YGQ3_CICAR (uncharacterized protein LOC113787721 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A3Q7YGQ3_CICAR)

HSP 1 Score: 94.0 bits (232), Expect = 4.840e-20
Identity = 64/105 (60.95%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLGR----KVRSSARIDYVPALCTHRPSHLPIECFGEDSGPELE-RFAA 300
            MGGGAWPFLVGG ICLVNSVNERD  LLNS  YV   L   G   R T A     + L R    K  SSAR+DYVPALCTHRPS LPIE  GE  G     RFAA
Sbjct:  161 MGGGAWPFLVGGAICLVNSVNERDLSLLNS--YVEVTLH--GQLLRGTMAIIAI-VGLKRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGLRRRGRFAA 260
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BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A6A5P3E1_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5P3E1_LUPAL)

HSP 1 Score: 90.1 bits (222), Expect = 5.850e-20
Identity = 56/103 (54.37%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLG--RKVRSSARIDYVPALCTHRPSHLPIECFGEDSGPELE-RFAA 300
            MGGGAWPFLVGG ICLVNSVNERD  LL S                Y +      +  G   K  SSAR+DYVPALCTHRPS LPIE  GE  G     RFAA
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTS----------------YVEIIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGLRRRGRFAA 87
[Close]
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A6A5P324_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5P324_LUPAL)

HSP 1 Score: 90.1 bits (222), Expect = 1.100e-19
Identity = 56/103 (54.37%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLG--RKVRSSARIDYVPALCTHRPSHLPIECFGEDSGPELE-RFAA 300
            MGGGAWPFLVGG ICLVNSVNERD  LL S                Y +      +  G   K  SSAR+DYVPALCTHRPS LPIE  GE  G     RFAA
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTS----------------YVEIIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGLRRRGRFAA 87
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BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A835J4A1_9ROSI (Uncharacterized protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835J4A1_9ROSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.390e-19
Identity = 49/73 (67.12%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISL-----GRKVRSSARI 204
            MGGGAW FLVGG ICLVNSVNERD  LL S A VCDALRC GPHARYTD  NE SI+L     GR+ R+   +
Sbjct:    1 MGGGAWSFLVGGAICLVNSVNERDLSLLTSYAEVCDALRCSGPHARYTDVFNE-SIALADRPGGRRSRNKVSV 72
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BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A0A0LPG1_CUCSA (Uncharacterized protein n=1 Tax=Cucumis sativus TaxID=3659 RepID=A0A0A0LPG1_CUCSA)

HSP 1 Score: 90.9 bits (224), Expect = 1.420e-19
Identity = 52/92 (56.52%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLGRKVRSSARIDYVPALCTHRPSHLPIECFGEDSG 276
            MGGGAWPFLVGG ICLVNSVNERD  LL S A +               A       +  K  SSAR+DYVPALCTHRPS LPIE  GE  G
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEII--------------AIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFG 78
[Close]
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A6A5L9L7_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L9L7_LUPAL)

HSP 1 Score: 92.4 bits (228), Expect = 1.730e-19
Identity = 47/64 (73.44%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLGRKVRS 192
            MGGGAWPFLVGG ICLVNSVNERD  LL S   VCDALRC GPHARYTD  NE SI+L  +  S
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEVCDALRCSGPHARYTDVFNE-SIALADRPGS 63
[Close]
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A6P5WYZ9_DURZI (uncharacterized protein LOC111278348 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5WYZ9_DURZI)

HSP 1 Score: 92.4 bits (228), Expect = 1.760e-19
Identity = 53/96 (55.21%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEF--------SISLGRK-VRSSARIDYVPAL--CTHRPSHLPIE 255
            MGGGAWPFLVG  ICLVNS+NERD  LL S A VCDALRC GPHARYTD  NE         S+S  R  VR+  R++  P    C  RP   P +
Sbjct:    1 MGGGAWPFLVGITICLVNSINERDLNLLTSYAEVCDALRCSGPHARYTDVFNESIAWADRVGSLSKPRSTVRTRGRVNETPRGRGCPPRPEPPPAQ 96
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A5LDC5_LUPAL2.650e-2054.37Uncharacterized protein n=3 Tax=Lupinus albus TaxI... [more]
A0A0R0GH50_SOYBN3.090e-2061.90Uncharacterized protein n=1 Tax=Glycine max TaxID=... [more]
A0A072TUX5_MEDTR4.470e-2055.34Uncharacterized protein n=1 Tax=Medicago truncatul... [more]
A0A3Q7YGQ3_CICAR4.840e-2060.95uncharacterized protein LOC113787721 n=1 Tax=Cicer... [more]
A0A6A5P3E1_LUPAL5.850e-2054.37Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5P324_LUPAL1.100e-1954.37Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A835J4A1_9ROSI1.390e-1967.12Uncharacterized protein n=1 Tax=Salix dunnii TaxID... [more]
A0A0A0LPG1_CUCSA1.420e-1956.52Uncharacterized protein n=1 Tax=Cucumis sativus Ta... [more]
A0A6A5L9L7_LUPAL1.730e-1973.44Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6P5WYZ9_DURZI1.760e-1955.21uncharacterized protein LOC111278348 n=1 Tax=Durio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1002contigF-serratus_M_contig1002:35104..36231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score94.0
Seed ortholog evalue6.8e-17
Seed eggNOG ortholog3827.XP_004509500.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2DF3V@1,2S5RJ@2759,37Z86@33090,3GP2Q@35493,4JUN9@91835
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons4
Model size548
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1002.129.1prot_F-serratus_M_contig1002.129.1Fucus serratus malepolypeptideF-serratus_M_contig1002 35104..36154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928792.975352-CDS-F-serratus_M_contig1002:35103..352021622928792.975352-CDS-F-serratus_M_contig1002:35103..35202Fucus serratus maleCDSF-serratus_M_contig1002 35104..35202 +
1690962574.3492038-CDS-F-serratus_M_contig1002:35103..352021690962574.3492038-CDS-F-serratus_M_contig1002:35103..35202Fucus serratus maleCDSF-serratus_M_contig1002 35104..35202 +
1622928792.98955-CDS-F-serratus_M_contig1002:35275..353651622928792.98955-CDS-F-serratus_M_contig1002:35275..35365Fucus serratus maleCDSF-serratus_M_contig1002 35276..35365 +
1690962574.3667483-CDS-F-serratus_M_contig1002:35275..353651690962574.3667483-CDS-F-serratus_M_contig1002:35275..35365Fucus serratus maleCDSF-serratus_M_contig1002 35276..35365 +
1622928793.008585-CDS-F-serratus_M_contig1002:35447..355731622928793.008585-CDS-F-serratus_M_contig1002:35447..35573Fucus serratus maleCDSF-serratus_M_contig1002 35448..35573 +
1690962574.3770802-CDS-F-serratus_M_contig1002:35447..355731690962574.3770802-CDS-F-serratus_M_contig1002:35447..35573Fucus serratus maleCDSF-serratus_M_contig1002 35448..35573 +
1622928793.0207837-CDS-F-serratus_M_contig1002:35998..361541622928793.0207837-CDS-F-serratus_M_contig1002:35998..36154Fucus serratus maleCDSF-serratus_M_contig1002 35999..36154 +
1690962574.3892355-CDS-F-serratus_M_contig1002:35998..361541690962574.3892355-CDS-F-serratus_M_contig1002:35998..36154Fucus serratus maleCDSF-serratus_M_contig1002 35999..36154 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928793.033874-UTR-F-serratus_M_contig1002:36154..362311622928793.033874-UTR-F-serratus_M_contig1002:36154..36231Fucus serratus maleUTRF-serratus_M_contig1002 36155..36231 +
1690962574.4051816-UTR-F-serratus_M_contig1002:36154..362311690962574.4051816-UTR-F-serratus_M_contig1002:36154..36231Fucus serratus maleUTRF-serratus_M_contig1002 36155..36231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1002.129.1

>prot_F-serratus_M_contig1002.129.1 ID=prot_F-serratus_M_contig1002.129.1|Name=mRNA_F-serratus_M_contig1002.129.1|organism=Fucus serratus male|type=polypeptide|length=157bp
MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDA
CNEFSISLGRKVRSSARIDYVPALCTHRPSHLPIECFGEDSGPELERFAA
HWRREPNHETHQKSNLNHRKEGRKPSVVRLSSRPAELYIYVTTKNFQRRM
SWLPLR*
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mRNA from alignment at F-serratus_M_contig1002:35104..36231+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1002.129.1 ID=mRNA_F-serratus_M_contig1002.129.1|Name=mRNA_F-serratus_M_contig1002.129.1|organism=Fucus serratus male|type=mRNA|length=1128bp|location=Sequence derived from alignment at F-serratus_M_contig1002:35104..36231+ (Fucus serratus male)
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGT
TAATTCCGTTAACGAACGAGACCCCCGCCTGCTAAATAGTGGGGCTTACG
TTTCTACGTAGGCAGCTCGCTTCTTAGAGGGACTTTCGGTGACTAACCGA
AGGAAGTTGGGGGCAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGC
CGCACGCGCGCTACACTGATGCATGCAACGAGTTCTCAATCTCCCTGGGC
CGGAAGGTCCGGGTAACCTTTTGAACGTGCATCGTGATAGGGATAGATTT
TTGTAAATATTAATCTTGAACGAGGAATTCCTAGTAAACGCGAGTCATCA
GCTCGCATTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCACCT
ACCGATTGAATGTTTCGGTGAAGATTCCGGACCGGAACTTGAGCGCTTCG
CGGCGCACTGGCGAAGGGAAGTTATCTAAACCTCAACATTTAGAGGAAGG
TGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATT
ACCAAAAACAAAATCTCTTCTCACTGGTGGACTCATTGCGAGTCTCACCG
CGGCCTTTTTAAATAATTTATTTTTATGTGGCGAGGCCGAAACACGGCCT
TGTTATTTAAGCGACGAATAATTATTTAAACCTTTTCGCTCCTGCGGGCT
GGAACCGGCCTGTCTGCTTACAAACGGGGTCGACCAAACGTGTCTGTTTT
TTCCTTGCCCGCGGGGGACGACTTAACGGAAAGATATTTGTTCGTGCCTT
CTTATCCATTAGATGGATGAGTTGGACGAACGCGGACGAGTGGCTCCTCG
TTGAGGCTGCGGGTGGTGTAATACCGCCCGCTGCCCGAAATCAAGCCGAA
CCACGAAACACACCAAAAGTCGAATCTAAATCATCGGAAGGAAGGAAGGA
AGCCTAGCGTTGTTAGGCTCTCCAGCCGTCCCGCCGAGCTTTACATATAC
GTAACGACTAAAAACTTTCAGCGACGGATGTCTTGGCTCCCACTACGATG
AAGAACGCAGCGAAATGCGATACGTCTTGCGACTTGCAGAATCCAGTGAA
TCATCAAAACTTTGAACGCACCTTGCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1002:35104..36231+

>mRNA_F-serratus_M_contig1002.129.1 ID=mRNA_F-serratus_M_contig1002.129.1|Name=mRNA_F-serratus_M_contig1002.129.1|organism=Fucus serratus male|type=CDS|length=942bp|location=Sequence derived from alignment at F-serratus_M_contig1002:35104..36231+ (Fucus serratus male)
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGT
TAATTCCGTTAACGAACGAGACCCCCGCCTGCTAAATAGTGGGGCTTACA
TGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTT
AATTCCGTTAACGAACGAGACCCCCGCCTGCTAAATAGTGGGGCTTACGT
CTGTGATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGATGCAT
GCAACGAGTTCTCAATCTCCCTGGGCCGGAAGGTCCGGGTCTGTGATGCC
CTTAGATGTCCTGGGCCGCACGCGCGCTACACTGATGCATGCAACGAGTT
CTCAATCTCCCTGGGCCGGAAGGTCCGGTCATCAGCTCGCATTGATTACG
TCCCTGCCCTTTGTACACACCGCCCGTCGCACCTACCGATTGAATGTTTC
GGTGAAGATTCCGGACCGGAACTTGAGCGCTTCGCGGCGCACTGGCGAAG
GGAATCATCAGCTCGCATTGATTACGTCCCTGCCCTTTGTACACACCGCC
CGTCGCACCTACCGATTGAATGTTTCGGTGAAGATTCCGGACCGGAACTT
GAGCGCTTCGCGGCGCACTGGCGAAGGGAACCGAACCACGAAACACACCA
AAAGTCGAATCTAAATCATCGGAAGGAAGGAAGGAAGCCTAGCGTTGTTA
GGCTCTCCAGCCGTCCCGCCGAGCTTTACATATACGTAACGACTAAAAAC
TTTCAGCGACGGATGTCTTGGCTCCCACTACGATGACCGAACCACGAAAC
ACACCAAAAGTCGAATCTAAATCATCGGAAGGAAGGAAGGAAGCCTAGCG
TTGTTAGGCTCTCCAGCCGTCCCGCCGAGCTTTACATATACGTAACGACT
AAAAACTTTCAGCGACGGATGTCTTGGCTCCCACTACGATGA
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