mRNA_F-serratus_M_contig1002.129.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1002.129.1
Unique NamemRNA_F-serratus_M_contig1002.129.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A0L9UDJ6_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9UDJ6_PHAAN)

HSP 1 Score: 132 bits (331), Expect = 1.110e-34
Identity = 74/104 (71.15%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLGR---KVRSSARIDYVPALCTHRPSHLPIECFGEDSGPELE-RFAA 300
            MGGGAWPFLVGG ICLVNSVNERD  LLNS   VCDALRC GPHARYT   NE SI+L     K  SSAR+DYVPALCTHRPS LPIE  GE  G     RFAA
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEVCDALRCSGPHARYTYVFNE-SIALADRPGKRESSARVDYVPALCTHRPSLLPIEWSGEVLGLRRRGRFAA 103          
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A6A5L3Q3_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L3Q3_LUPAL)

HSP 1 Score: 123 bits (309), Expect = 2.480e-33
Identity = 65/93 (69.89%), Postives = 70/93 (75.27%), Query Frame = 1
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLGR---KVRSSARIDYVPALCTHRPS----HLPIEC 258
            MGGGAWPFLVGG ICLVNSVNERD  LL S   VCDALRC GPHARYTD  NE SI+L     K  SSAR+DYVPALCTHRPS    + P++C
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEVCDALRCSGPHARYTDVFNE-SIALADRPGKRESSARVDYVPALCTHRPSLYRLNGPVKC 92          
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A6A5L666_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L666_LUPAL)

HSP 1 Score: 101 bits (252), Expect = 1.220e-24
Identity = 60/102 (58.82%), Postives = 67/102 (65.69%), Query Frame = 1
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLGRKVRSSARIDYVPALCTHRP-SHLPIECFGEDSGPELE-RFAA 300
            MGGGAWPFLVGG ICLVNSVNERD  LL S   VCDALRC GPHARYTD  NE SI+L  +  +S ++    +   + P S LPIE  GE  G     RFAA
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEVCDALRCSGPHARYTDVFNE-SIALADRPGASHQLALTTSCPLYTPPSLLPIEWSGEVFGLRRRGRFAA 101          
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A6A5L6D6_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L6D6_LUPAL)

HSP 1 Score: 95.5 bits (236), Expect = 1.920e-22
Identity = 53/98 (54.08%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLGRKVRSSARIDYVPALCTHRPSHLPIECFGEDSGPELERF 294
            MGGGAWPFLVGG ICLVNSVNERD  LL S   VCDALRC GPHARYTD  NE   S+    R   RI    A+   R      E +  + G  + RF
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEVCDALRCSGPHARYTDVFNE---SIALADRPGVRIAATWAVRCRRRCEKSTEPYHLEEGEVVTRF 95          
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A8D9DBA2_BRACM ((field mustard) hypothetical protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9DBA2_BRACM)

HSP 1 Score: 95.5 bits (236), Expect = 2.690e-22
Identity = 53/92 (57.61%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLGRKVRSSARI---DYVPALCTHRPSHL---PIEC 258
            MGGGAWPFLVGG ICLVNSVNERD  LL S  YVCDALRC GPHARYTD  NEF+  L   + +S ++     +P + T R S+    P++C
Sbjct:    1 MGGGAWPFLVGGEICLVNSVNERDLSLLTS--YVCDALRCSGPHARYTDVFNEFTPWLTGPLSASHQLMLTTSLPFVHTARHSYRLNDPVKC 90          
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A0R0GQW8_SOYBN (Uncharacterized protein n=6 Tax=rosids TaxID=71275 RepID=A0A0R0GQW8_SOYBN)

HSP 1 Score: 94.7 bits (234), Expect = 4.180e-22
Identity = 58/103 (56.31%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLG--RKVRSSARIDYVPALCTHRPSHLPIECFGEDSG-PELERFAA 300
            MGGGAWPFLVGG ICLVNSVNERD  LLNS                Y +      +  G   K  SSAR+DYVPALCTHRPS LPIE  GE  G    ERFAA
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLNS----------------YVEIIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGLRRRERFAA 87          
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A0D2ZQ56_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D2ZQ56_BRAOL)

HSP 1 Score: 95.9 bits (237), Expect = 6.670e-22
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFS------ISLGRKVRSSARIDYVPALCTHRPSHL--PIEC 258
            MGGGAWPFLVGG ICLVNSVNERD  LL S  YVCDALRC GPHARYTD  NEF+      +S   ++  +  + +V      RP  L  P++C
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTS--YVCDALRCSGPHARYTDVFNEFTPWPTGPVSASHQLALTTSLPFVHTA--RRPYRLNDPVKC 90          
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A835JQG9_9ROSI (Uncharacterized protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835JQG9_9ROSI)

HSP 1 Score: 97.8 bits (242), Expect = 7.860e-22
Identity = 61/113 (53.98%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISL-----GRKVRSSARIDYVPA---LCTHRPSHLPIECFGEDSGPELERFAAH-WRR 312
            MGGGAWPFLVGG IC+VNSVNERD  LL S A VCDALRC GPHARYTD  NE SI+L     GR+ R+   +   PA   L    P+  P   + +  G    RFA   WRR
Sbjct:    1 MGGGAWPFLVGGAICVVNSVNERDLSLLTSYAEVCDALRCSGPHARYTDVFNE-SIALADRPGGRRSRNKVSVGE-PAEGSLSKPAPAERPANPWHDKPGSGGTRFAQRAWRR 111          
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A5N6NFM9_9ASTR (Uncharacterized protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFM9_9ASTR)

HSP 1 Score: 93.2 bits (230), Expect = 2.670e-21
Identity = 45/64 (70.31%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLGRKVRS 192
            MGGGAWPFLVGG ICLVNSVNE+D  LL S A VCDALRC GPHARYTD  NE+     R  +S
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNEQDLSLLTSYAEVCDALRCSGPHARYTDVFNEYIALADRPGKS 64          
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Match: A0A2P5W4F7_GOSBA (Uncharacterized protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5W4F7_GOSBA)

HSP 1 Score: 92.4 bits (228), Expect = 6.640e-21
Identity = 46/64 (71.88%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDACNEFSISLGRKVRS 192
            MGGGAWPFLVGG ICLVNSVNERD  LL S   VCDALRC GPHARYTD  NE      R  RS
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYTEVCDALRCSGPHARYTDVFNESIALADRPGRS 64          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1002.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L9UDJ6_PHAAN1.110e-3471.15Uncharacterized protein n=1 Tax=Phaseolus angulari... [more]
A0A6A5L3Q3_LUPAL2.480e-3369.89Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L666_LUPAL1.220e-2458.82Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L6D6_LUPAL1.920e-2254.08Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A8D9DBA2_BRACM2.690e-2257.61(field mustard) hypothetical protein n=1 Tax=Brass... [more]
A0A0R0GQW8_SOYBN4.180e-2256.31Uncharacterized protein n=6 Tax=rosids TaxID=71275... [more]
A0A0D2ZQ56_BRAOL6.670e-2255.32Uncharacterized protein n=1 Tax=Brassica oleracea ... [more]
A0A835JQG9_9ROSI7.860e-2253.98Uncharacterized protein n=1 Tax=Salix dunnii TaxID... [more]
A0A5N6NFM9_9ASTR2.670e-2170.31Uncharacterized protein n=2 Tax=Mikania micrantha ... [more]
A0A2P5W4F7_GOSBA6.640e-2171.88Uncharacterized protein n=1 Tax=Gossypium barbaden... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1002contigF-serratus_M_contig1002:35104..36231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score94.0
Seed ortholog evalue6.8e-17
Seed eggNOG ortholog3827.XP_004509500.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2DF3V@1,2S5RJ@2759,37Z86@33090,3GP2Q@35493,4JUN9@91835
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons4
Model size548
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1002.129.1prot_F-serratus_M_contig1002.129.1Fucus serratus malepolypeptideF-serratus_M_contig1002 35104..36154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928792.975352-CDS-F-serratus_M_contig1002:35103..352021622928792.975352-CDS-F-serratus_M_contig1002:35103..35202Fucus serratus maleCDSF-serratus_M_contig1002 35104..35202 +
1690962574.3492038-CDS-F-serratus_M_contig1002:35103..352021690962574.3492038-CDS-F-serratus_M_contig1002:35103..35202Fucus serratus maleCDSF-serratus_M_contig1002 35104..35202 +
1622928792.98955-CDS-F-serratus_M_contig1002:35275..353651622928792.98955-CDS-F-serratus_M_contig1002:35275..35365Fucus serratus maleCDSF-serratus_M_contig1002 35276..35365 +
1690962574.3667483-CDS-F-serratus_M_contig1002:35275..353651690962574.3667483-CDS-F-serratus_M_contig1002:35275..35365Fucus serratus maleCDSF-serratus_M_contig1002 35276..35365 +
1622928793.008585-CDS-F-serratus_M_contig1002:35447..355731622928793.008585-CDS-F-serratus_M_contig1002:35447..35573Fucus serratus maleCDSF-serratus_M_contig1002 35448..35573 +
1690962574.3770802-CDS-F-serratus_M_contig1002:35447..355731690962574.3770802-CDS-F-serratus_M_contig1002:35447..35573Fucus serratus maleCDSF-serratus_M_contig1002 35448..35573 +
1622928793.0207837-CDS-F-serratus_M_contig1002:35998..361541622928793.0207837-CDS-F-serratus_M_contig1002:35998..36154Fucus serratus maleCDSF-serratus_M_contig1002 35999..36154 +
1690962574.3892355-CDS-F-serratus_M_contig1002:35998..361541690962574.3892355-CDS-F-serratus_M_contig1002:35998..36154Fucus serratus maleCDSF-serratus_M_contig1002 35999..36154 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928793.033874-UTR-F-serratus_M_contig1002:36154..362311622928793.033874-UTR-F-serratus_M_contig1002:36154..36231Fucus serratus maleUTRF-serratus_M_contig1002 36155..36231 +
1690962574.4051816-UTR-F-serratus_M_contig1002:36154..362311690962574.4051816-UTR-F-serratus_M_contig1002:36154..36231Fucus serratus maleUTRF-serratus_M_contig1002 36155..36231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1002.129.1

>prot_F-serratus_M_contig1002.129.1 ID=prot_F-serratus_M_contig1002.129.1|Name=mRNA_F-serratus_M_contig1002.129.1|organism=Fucus serratus male|type=polypeptide|length=157bp
MGGGAWPFLVGGVICLVNSVNERDPRLLNSGAYVCDALRCPGPHARYTDA
CNEFSISLGRKVRSSARIDYVPALCTHRPSHLPIECFGEDSGPELERFAA
HWRREPNHETHQKSNLNHRKEGRKPSVVRLSSRPAELYIYVTTKNFQRRM
SWLPLR*
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mRNA from alignment at F-serratus_M_contig1002:35104..36231+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1002.129.1 ID=mRNA_F-serratus_M_contig1002.129.1|Name=mRNA_F-serratus_M_contig1002.129.1|organism=Fucus serratus male|type=mRNA|length=1128bp|location=Sequence derived from alignment at F-serratus_M_contig1002:35104..36231+ (Fucus serratus male)
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGT TAATTCCGTTAACGAACGAGACCCCCGCCTGCTAAATAGTGGGGCTTACG TTTCTACGTAGGCAGCTCGCTTCTTAGAGGGACTTTCGGTGACTAACCGA AGGAAGTTGGGGGCAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGC CGCACGCGCGCTACACTGATGCATGCAACGAGTTCTCAATCTCCCTGGGC CGGAAGGTCCGGGTAACCTTTTGAACGTGCATCGTGATAGGGATAGATTT TTGTAAATATTAATCTTGAACGAGGAATTCCTAGTAAACGCGAGTCATCA GCTCGCATTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCACCT ACCGATTGAATGTTTCGGTGAAGATTCCGGACCGGAACTTGAGCGCTTCG CGGCGCACTGGCGAAGGGAAGTTATCTAAACCTCAACATTTAGAGGAAGG TGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATT ACCAAAAACAAAATCTCTTCTCACTGGTGGACTCATTGCGAGTCTCACCG CGGCCTTTTTAAATAATTTATTTTTATGTGGCGAGGCCGAAACACGGCCT TGTTATTTAAGCGACGAATAATTATTTAAACCTTTTCGCTCCTGCGGGCT GGAACCGGCCTGTCTGCTTACAAACGGGGTCGACCAAACGTGTCTGTTTT TTCCTTGCCCGCGGGGGACGACTTAACGGAAAGATATTTGTTCGTGCCTT CTTATCCATTAGATGGATGAGTTGGACGAACGCGGACGAGTGGCTCCTCG TTGAGGCTGCGGGTGGTGTAATACCGCCCGCTGCCCGAAATCAAGCCGAA CCACGAAACACACCAAAAGTCGAATCTAAATCATCGGAAGGAAGGAAGGA AGCCTAGCGTTGTTAGGCTCTCCAGCCGTCCCGCCGAGCTTTACATATAC GTAACGACTAAAAACTTTCAGCGACGGATGTCTTGGCTCCCACTACGATG AAGAACGCAGCGAAATGCGATACGTCTTGCGACTTGCAGAATCCAGTGAA TCATCAAAACTTTGAACGCACCTTGCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1002:35104..36231+

>mRNA_F-serratus_M_contig1002.129.1 ID=mRNA_F-serratus_M_contig1002.129.1|Name=mRNA_F-serratus_M_contig1002.129.1|organism=Fucus serratus male|type=CDS|length=942bp|location=Sequence derived from alignment at F-serratus_M_contig1002:35104..36231+ (Fucus serratus male)
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGT
TAATTCCGTTAACGAACGAGACCCCCGCCTGCTAAATAGTGGGGCTTACA
TGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTT
AATTCCGTTAACGAACGAGACCCCCGCCTGCTAAATAGTGGGGCTTACGT
CTGTGATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGATGCAT
GCAACGAGTTCTCAATCTCCCTGGGCCGGAAGGTCCGGGTCTGTGATGCC
CTTAGATGTCCTGGGCCGCACGCGCGCTACACTGATGCATGCAACGAGTT
CTCAATCTCCCTGGGCCGGAAGGTCCGGTCATCAGCTCGCATTGATTACG
TCCCTGCCCTTTGTACACACCGCCCGTCGCACCTACCGATTGAATGTTTC
GGTGAAGATTCCGGACCGGAACTTGAGCGCTTCGCGGCGCACTGGCGAAG
GGAATCATCAGCTCGCATTGATTACGTCCCTGCCCTTTGTACACACCGCC
CGTCGCACCTACCGATTGAATGTTTCGGTGAAGATTCCGGACCGGAACTT
GAGCGCTTCGCGGCGCACTGGCGAAGGGAACCGAACCACGAAACACACCA
AAAGTCGAATCTAAATCATCGGAAGGAAGGAAGGAAGCCTAGCGTTGTTA
GGCTCTCCAGCCGTCCCGCCGAGCTTTACATATACGTAACGACTAAAAAC
TTTCAGCGACGGATGTCTTGGCTCCCACTACGATGACCGAACCACGAAAC
ACACCAAAAGTCGAATCTAAATCATCGGAAGGAAGGAAGGAAGCCTAGCG
TTGTTAGGCTCTCCAGCCGTCCCGCCGAGCTTTACATATACGTAACGACT
AAAAACTTTCAGCGACGGATGTCTTGGCTCCCACTACGATGA
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