mRNA_F-serratus_M_contig100.106.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig100.106.1 vs. uniprot
Match: A0A6H5KR55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR55_9PHAE) HSP 1 Score: 205 bits (521), Expect = 3.700e-55 Identity = 126/269 (46.84%), Postives = 169/269 (62.83%), Query Frame = 1 Query: 952 ATGNGVNI---RKVVVAEQEATAFSLVDAVQAALGVSRPSSSLLDGVDNDEDLGCTRHTPFWCLTIQRCQLFYLVPTTRLLHLMRRMCGMDIVECTGLVLTGLEQILIDANCLRTLTIRRCGLTRLPQLRSGSVEVLDLSENCIKSTAGLETLFRLKRLNLASNSIRNVMGLRPLIPLGTGCLRELNLHGNPVQETTRYRPVIEAMIPSIQVLDGVTVS---RRRSGKIPAGMSTERGRSHKSPSTPRAGRTRARSVDGFVSGEGTTYS 1740 A+G GV+I RKV + Q T+ L D V+A LG+ ++ VD+ ++ W LT ++CQL L+P LLH + + G+ I GL L G+E++L DA CL TLTIR CGL RLP+L+SGS+EVLD S N I+S AGLETLFRL+ LNLA N IR + LRPL+PLGTG LRELNL NPVQ++ RYR + A+ PSIQ+LDG+ S R R+ P M+ E G + ++ STP R R +G+ S +G T++ Sbjct: 30 ASGRGVSIGEIRKVDLVGQAVTSLGLADVVEATLGIPTTPAAPSRHVDDTKERKDMCDLLLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGTDGLALAGIERVLADARCLCTLTIRDCGLARLPRLQSGSIEVLDFSNNAIESAAGLETLFRLQELNLAGNRIRTLSDLRPLLPLGTGRLRELNLENNPVQDSPRYRESVLAVFPSIQLLDGIAKSQKWRMRTATKP-NMAGEEGHNRRACSTPP--RVRNAFAEGYFS-DGATWN 294
BLAST of mRNA_F-serratus_M_contig100.106.1 vs. uniprot
Match: D7G481_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G481_ECTSI) HSP 1 Score: 187 bits (476), Expect = 2.860e-50 Identity = 107/207 (51.69%), Postives = 138/207 (66.67%), Query Frame = 1 Query: 1126 WCLTIQRCQLFYLVPTTRLLHLMRRMCGMDIVECTGLVLTGLEQILIDANCLRTLTIRRCGLTRLPQLRSGSVEVLDLSENCIKSTAGLETLFRLKRLNLASNSIRNVMGLRPLIPLGTGCLRELNLHGNPVQETTRYRPVIEAMIPSIQVLDGVTVSRRRSGKIPAGMST--ERGRSHKSPSTPRAGRTRARSVDGFVSGEGTTYS 1740 W LT ++CQL L+P LLH + + G+ I GL L G+E++L DA CL TLTIR C L RLP+L+SGS+EVLD+S N I+S AGLETLFRLK LNLA N IR + GLRPL+PLGTG LRELNL NPVQ T RYR + A+ PSIQ+LDG+ S++ + +T E G ++ STP R R +G+ S +G T++ Sbjct: 7 WSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGIDGLTLAGVERVLADARCLCTLTIRHCRLARLPRLQSGSIEVLDISNNAIESAAGLETLFRLKELNLAGNRIRTLSGLRPLVPLGTGRLRELNLDSNPVQNTPRYRESVLAVFPSIQLLDGIAKSQKWRMRTATKTNTVGEEGHDRRACSTPP--RVRNAFSEGYFS-DGATWN 210
BLAST of mRNA_F-serratus_M_contig100.106.1 vs. uniprot
Match: A0A6H5KJJ5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ5_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 3.290e-6 Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 1 Query: 2944 FKVELDQEEARSLYHQLDSDRDGVLGAEDLLRGAPIIAKL 3063 + V+L EEAR LY QLDSDRDG LGAEDLLRGA +A Sbjct: 5 YPVDLSGEEARCLYQQLDSDRDGALGAEDLLRGASTVASF 44
BLAST of mRNA_F-serratus_M_contig100.106.1 vs. uniprot
Match: A0A074ZR27_9TREM (Uncharacterized protein n=2 Tax=Opisthorchiidae TaxID=6196 RepID=A0A074ZR27_9TREM) HSP 1 Score: 61.2 bits (147), Expect = 1.530e-5 Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1 Query: 1279 LRTLTIRRCGLTRLPQLRSGSVEVLDLSENCIKSTAGLETLFRLKRLNLASNSIRNVMGLRPLIPLGTGC--LRELNLHGNPVQETTRYRPVIEAMIPSIQVLDG--VTVSRRRSGK 1617 L L I C L LP L + ++ LDLS N + + L +L RLK LN+ N + N+ + +I + C L++LNL NP + T R + A +PSI+ +DG VT + R S + Sbjct: 699 LTVLFINHCRLRVLPTLANLPLQSLDLSHNLLPTLTNLNSLPRLKVLNVNYNILTNLF--QDVITISNSCTKLQDLNLQFNPWKVPTEVRLFVAAYLPSIETIDGYLVTANDRESAE 813
BLAST of mRNA_F-serratus_M_contig100.106.1 vs. uniprot
Match: A0A4S2MFB7_OPIFE (Uncharacterized protein n=1 Tax=Opisthorchis felineus TaxID=147828 RepID=A0A4S2MFB7_OPIFE) HSP 1 Score: 61.2 bits (147), Expect = 1.530e-5 Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 1 Query: 1279 LRTLTIRRCGLTRLPQLRSGSVEVLDLSENCIKSTAGLETLFRLKRLNLASNSIRNVMGLRPLIPLGTGC--LRELNLHGNPVQETTRYRPVIEAMIPSIQVLDGVTV 1596 L L+I C L LP L + ++ LDLS N + + L +L RLK LN+ N + N +I + C LR+LNL NP + T R + A +PSI +DG V Sbjct: 703 LTILSINHCRLRVLPTLANLPLQSLDLSHNLLPTLTNLNSLPRLKVLNVNYNMLTNAFP--DVIAISNACTKLRDLNLQFNPWKAPTEVRLFVAAYVPSINTIDGYMV 808
BLAST of mRNA_F-serratus_M_contig100.106.1 vs. uniprot
Match: A0A3R7D324_CLOSI (Poly(A)-specific ribonuclease (Fragment) n=1 Tax=Clonorchis sinensis TaxID=79923 RepID=A0A3R7D324_CLOSI) HSP 1 Score: 58.9 bits (141), Expect = 8.370e-5 Identity = 41/119 (34.45%), Postives = 61/119 (51.26%), Query Frame = 1 Query: 1279 LRTLTIRRCGLTRLPQLRSGSVEVLDLSENCIKSTAGLETLFRLKRLNLASNSIRNVMGLRPLIPLGTGC--LRELNLHGNPVQETTRYRPVIEAMIPSIQVLDGVTV---SRRRSGKI 1620 L L+I C L LP L + ++ LDLS N + + L +L RLK LN+ N + N+ +I + C L++LNL NP + T + A +PSI+ +DG V R +G I Sbjct: 1808 LTVLSINHCRLRVLPALANLPLQSLDLSHNLLPTLTNLNSLPRLKVLNVNYNMLTNLF--LDVITISNSCTKLQDLNLQFNPWKALTEVHLFVAAYLPSIKTVDGYLVPDNDRESAGNI 1924 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig100.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig100.106.1 >prot_F-serratus_M_contig100.106.1 ID=prot_F-serratus_M_contig100.106.1|Name=mRNA_F-serratus_M_contig100.106.1|organism=Fucus serratus male|type=polypeptide|length=1157bp MSTLEWTLSDWNCSDRDDDGVGAPVTGITDGTPQACEEFVKQTQGIDEAAback to top mRNA from alignment at F-serratus_M_contig100:397189..419532- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig100.106.1 ID=mRNA_F-serratus_M_contig100.106.1|Name=mRNA_F-serratus_M_contig100.106.1|organism=Fucus serratus male|type=mRNA|length=22344bp|location=Sequence derived from alignment at F-serratus_M_contig100:397189..419532- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig100:397189..419532- >mRNA_F-serratus_M_contig100.106.1 ID=mRNA_F-serratus_M_contig100.106.1|Name=mRNA_F-serratus_M_contig100.106.1|organism=Fucus serratus male|type=CDS|length=6942bp|location=Sequence derived from alignment at F-serratus_M_contig100:397189..419532- (Fucus serratus male)back to top |