mRNA_F-serratus_M_contig10.96.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig10.96.1
Unique NamemRNA_F-serratus_M_contig10.96.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig10.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig10contigF-serratus_M_contig10:1299135..1299958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size413
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig10.96.1prot_F-serratus_M_contig10.96.1Fucus serratus malepolypeptideF-serratus_M_contig10 1299135..1299767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.0386975-CDS-F-serratus_M_contig10:1299134..12992181622928781.0386975-CDS-F-serratus_M_contig10:1299134..1299218Fucus serratus maleCDSF-serratus_M_contig10 1299135..1299218 +
1690962567.50374-CDS-F-serratus_M_contig10:1299134..12992181690962567.50374-CDS-F-serratus_M_contig10:1299134..1299218Fucus serratus maleCDSF-serratus_M_contig10 1299135..1299218 +
1622928781.0519073-CDS-F-serratus_M_contig10:1299629..12997671622928781.0519073-CDS-F-serratus_M_contig10:1299629..1299767Fucus serratus maleCDSF-serratus_M_contig10 1299630..1299767 +
1690962567.5248473-CDS-F-serratus_M_contig10:1299629..12997671690962567.5248473-CDS-F-serratus_M_contig10:1299629..1299767Fucus serratus maleCDSF-serratus_M_contig10 1299630..1299767 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.0656886-UTR-F-serratus_M_contig10:1299767..12999581622928781.0656886-UTR-F-serratus_M_contig10:1299767..1299958Fucus serratus maleUTRF-serratus_M_contig10 1299768..1299958 +
1690962567.5334215-UTR-F-serratus_M_contig10:1299767..12999581690962567.5334215-UTR-F-serratus_M_contig10:1299767..1299958Fucus serratus maleUTRF-serratus_M_contig10 1299768..1299958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig10.96.1

>prot_F-serratus_M_contig10.96.1 ID=prot_F-serratus_M_contig10.96.1|Name=mRNA_F-serratus_M_contig10.96.1|organism=Fucus serratus male|type=polypeptide|length=74bp
HPRFKRLQELSAEDGSDRSTRTRWTRSNVNSGVWSVLDYVEDICWSPSSP
FFKSLTQTFRFHCYTYFVPPALT*
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mRNA from alignment at F-serratus_M_contig10:1299135..1299958+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig10.96.1 ID=mRNA_F-serratus_M_contig10.96.1|Name=mRNA_F-serratus_M_contig10.96.1|organism=Fucus serratus male|type=mRNA|length=824bp|location=Sequence derived from alignment at F-serratus_M_contig10:1299135..1299958+ (Fucus serratus male)
CACCCCAGGTTCAAAAGGCTACAAGAACTCTCCGCTGAAGATGGGAGCGA
TCGGAGCACGCGAACCAGATGGACGAGGAGCAACGTTTGAGCTGGCCTTG
ATCATCTCGGTTTTTGATTCAAAAAGAGCACCGTTAGGTATCGTGTTTTC
TTACTGTGTATGTTTGATTGTAGGAGAGTAAACTGACGACATTGACCAGT
CAGTACTTAGTTCCATACGTTTGGAATTGGTTGATTACCAGTGAACTATT
CGAGCACCGAACTTCTCGTCGTACACACTGGTCTACAATAGATTAAGTTG
GATACAACATCGGATAATAATTCGTCTTTGCAGCCGAAGCTTCTGATTTG
TGTTAGGTCGCTCGTGAACCTGTACTGTTTTGAGGAGCCTTCGTGTGAGC
AGTAGACCTGACTGACAGTAAGGAAGGTTCTCCACCTACCTGCTTCTCAC
TCCTTCGTACGACTTGCGACTCTCCTTTGCTGCGTCTACTTTCAGGTGAA
CAGCGGTGTTTGGTCTGTTCTGGATTATGTTGAAGACATCTGCTGGTCGC
CCTCTTCGCCTTTCTTCAAATCTTTGACCCAAACCTTTAGATTTCATTGT
TACACGTACTTTGTTCCTCCTGCTCTTACATAACCTGCATTTCCATCACT
GATGCTATACGTATGAGTGGCAGGTATCTTCTATAGTAATAACAACAATA
AACTATATTTCTCCTAGGATTATATTACTGTAGTCCTAATCCCTTAATGT
AAGTCATAAGTATAGTATAACAACGGGTCATTTATCCCCGATCTATCGTT
TGACCTGACTTATAGTATGTAACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig10:1299135..1299958+

>mRNA_F-serratus_M_contig10.96.1 ID=mRNA_F-serratus_M_contig10.96.1|Name=mRNA_F-serratus_M_contig10.96.1|organism=Fucus serratus male|type=CDS|length=444bp|location=Sequence derived from alignment at F-serratus_M_contig10:1299135..1299958+ (Fucus serratus male)
CACCCCAGGTTCAAAAGGCTACAAGAACTCTCCGCTGAAGATGGGAGCGA
TCGGAGCACGCGAACCAGATGGACGAGGAGCAACCACCCCAGGTTCAAAA
GGCTACAAGAACTCTCCGCTGAAGATGGGAGCGATCGGAGCACGCGAACC
AGATGGACGAGGAGCAACGTGAACAGCGGTGTTTGGTCTGTTCTGGATTA
TGTTGAAGACATCTGCTGGTCGCCCTCTTCGCCTTTCTTCAAATCTTTGA
CCCAAACCTTTAGATTTCATTGTTACACGTACTTTGTTCCTCCTGCTCTT
ACATAAGTGAACAGCGGTGTTTGGTCTGTTCTGGATTATGTTGAAGACAT
CTGCTGGTCGCCCTCTTCGCCTTTCTTCAAATCTTTGACCCAAACCTTTA
GATTTCATTGTTACACGTACTTTGTTCCTCCTGCTCTTACATAA
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