mRNA_F-serratus_M_contig10.95.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig10.95.1
Unique NamemRNA_F-serratus_M_contig10.95.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig10.95.1 vs. uniprot
Match: A0A812UGF3_SYMMI (DhkK protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UGF3_SYMMI)

HSP 1 Score: 60.1 bits (144), Expect = 1.600e-8
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   73 DEQDMLLFCVKDTGIGVTDELKPRLFKAFTQLQSMQSIGTGLGLYSVLQKALRLRGTCGIWDNFDAGS 276
            D  + L F ++DTGIG++DEL+ +LFK F Q Q M   GTGLGL+++ ++   L G CG+ D  D  S
Sbjct:  170 DAPEFLRFEIEDTGIGISDELRLKLFKPFQQTQRMAG-GTGLGLFALSERTKALGGHCGVSDRKDGQS 236          
BLAST of mRNA_F-serratus_M_contig10.95.1 vs. uniprot
Match: L1JXG5_GUITC (Uncharacterized protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1JXG5_GUITC)

HSP 1 Score: 58.9 bits (141), Expect = 4.170e-8
Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 1
Query:   85 MLLFCVKDTGIGVTDELKPRLFKAFTQLQSMQSIGTGLGLYSVLQKALRLRGTCGIWDNFDAGS 276
            M+ F V DTGIGV  +    LFK F QLQ     GTGLGL+SV +KA++L G CG+  N   G+
Sbjct:  349 MIRFSVADTGIGVDKDKMDLLFKPFGQLQDFSG-GTGLGLFSVREKAIKLGGACGVTMNEPKGT 411          
BLAST of mRNA_F-serratus_M_contig10.95.1 vs. uniprot
Match: A0A7S0Z3C2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z3C2_9CRYP)

HSP 1 Score: 58.2 bits (139), Expect = 7.790e-8
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  100 VKDTGIGVTDELKPRLFKAFTQLQSMQSIGTGLGLYSVLQKALRLRGTCGIWDNFDAGS 276
            V DTGIG+ +E + +LF AF+QLQ     GTGLGLYSVL+K   L G CG+  N   GS
Sbjct:  354 VADTGIGIQEEQRKKLFAAFSQLQDFAG-GTGLGLYSVLKKINVLGGACGVEANTPKGS 411          
BLAST of mRNA_F-serratus_M_contig10.95.1 vs. uniprot
Match: A0A496RDR2_9SPIR (Hybrid sensor histidine kinase/response regulator n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A496RDR2_9SPIR)

HSP 1 Score: 54.3 bits (129), Expect = 1.790e-6
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 1
Query:   58 VESDDDEQDMLLFCVKDTGIGVTDELKPRLFKAFTQLQSMQSI---GTGLGLYSVLQKALRLRGTCGI 252
            V  + D+   L FCV+DTGIG+ D+ K RLFK FTQ+ S  +    GTGLGL      A  + GT G+
Sbjct:  289 VAEEGDDDITLKFCVEDTGIGIPDDKKDRLFKVFTQVDSTTTRKYGGTGLGLSISKNLAEMMHGTIGV 356          
BLAST of mRNA_F-serratus_M_contig10.95.1 vs. uniprot
Match: UPI00135C3072 (ATP-binding protein n=1 Tax=Aquitalea denitrificans TaxID=519081 RepID=UPI00135C3072)

HSP 1 Score: 53.9 bits (128), Expect = 2.470e-6
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   49 AGSVESDDDEQDMLLFCVKDTGIGVTDELKPRLFKAFTQLQSMQSI---GTGLGLYSVLQKALRLRGTCGIWDNFDAGS 276
            + ++E   DEQ ML  CVKD+GIG++D+ + RLF+ F+Q  S  +    GTGLGL    + A  + G+ G+    + GS
Sbjct:  415 SATLEQGRDEQTMLRLCVKDSGIGLSDQARSRLFQPFSQADSSTTRKYGGTGLGLAICKRLAEAMGGSIGVQSTPEVGS 493          
BLAST of mRNA_F-serratus_M_contig10.95.1 vs. uniprot
Match: A0A5J6PA42_9GAMM (Histidine kinase n=1 Tax=Cellvibrio sp. KY-GH-1 TaxID=2303332 RepID=A0A5J6PA42_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 6.300e-6
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   58 VESDDDEQDMLLFCVKDTGIGVTDELKPRLFKAFTQLQSMQSI---GTGLGLYSVLQKALRLRG 240
             E  DD Q  L FCV+DTGIG+TDE + RLF++FTQ  S  +    GTGLGL ++ Q+ +++ G
Sbjct:  404 AEQGDDVQ--LAFCVRDTGIGITDEQQGRLFQSFTQADSSMARKYGGTGLGL-TISQRLVQMMG 464          
BLAST of mRNA_F-serratus_M_contig10.95.1 vs. uniprot
Match: A0A3G9GHJ6_9NEIS (Histidine kinase n=1 Tax=Aquitalea magnusonii TaxID=332411 RepID=A0A3G9GHJ6_9NEIS)

HSP 1 Score: 52.8 bits (125), Expect = 6.300e-6
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 1
Query:   49 AGSVESDDDEQDMLLFCVKDTGIGVTDELKPRLFKAFTQLQSMQSI---GTGLGLYSVLQKALRLRGTCGIWDNFDAGS 276
            + ++E   D Q ML  CVKDTGIG++D+ + RLF+ F+Q  S  +    GTGLGL    + A  + GT G+      GS
Sbjct:  425 SATLEPGRDTQSMLRLCVKDTGIGLSDQARSRLFQPFSQADSSTTRKYGGTGLGLAICKRLAEAMGGTIGVQSTPCVGS 503          
BLAST of mRNA_F-serratus_M_contig10.95.1 vs. uniprot
Match: A0A1R1JT06_ALCXX (Histidine kinase n=2 Tax=Alcaligenes xylosoxydans xylosoxydans TaxID=85698 RepID=A0A1R1JT06_ALCXX)

HSP 1 Score: 52.8 bits (125), Expect = 6.340e-6
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   70 DDEQDMLLFCVKDTGIGVTDELKPRLFKAFTQLQSMQS--IGTGLGLY 207
            DD + ++ +C+ DTGIG++DE K RLF+ F Q+Q  QS   G GLGLY
Sbjct:  623 DDGRTLMTWCISDTGIGISDEQKQRLFQPFYQVQDSQSSIAGAGLGLY 670          
BLAST of mRNA_F-serratus_M_contig10.95.1 vs. uniprot
Match: UPI001667893C (response regulator n=1 Tax=Dyadobacter endophyticus TaxID=1749036 RepID=UPI001667893C)

HSP 1 Score: 52.4 bits (124), Expect = 8.740e-6
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   70 DDEQDMLLFCVKDTGIGVTDELKPRLFKAFTQLQSMQSI---GTGLGLYSVLQKALRLRG-TCGIWDNFDAGS 276
            DD Q  L F V+D+GIG+++  + RLFKAF+Q+ S  S    GTGLGL ++ QK + L G T G+  N   GS
Sbjct: 1020 DDNQVGLYFEVRDSGIGISESKRDRLFKAFSQVDSSTSRQYGGTGLGL-AICQKLVNLMGGTIGVTSNAGEGS 1091          
BLAST of mRNA_F-serratus_M_contig10.95.1 vs. uniprot
Match: A0A850Q2J1_9BACT (Histidine kinase domain-containing protein n=1 Tax=Candidatus Nomurabacteria bacterium TaxID=2052152 RepID=A0A850Q2J1_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.140e-5
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   82 DMLLFCVKDTGIGVTDELKPRLFKAFTQLQS--MQSIGTGLGLYSVLQ 219
            D ++FCVKDTG+G+T+E+K  LF+ F++ +   M S GTGLGLY   Q
Sbjct:  450 DKVVFCVKDTGMGMTEEIKESLFQKFSRGEGAKMNSTGTGLGLYLAKQ 497          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig10.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812UGF3_SYMMI1.600e-845.59DhkK protein n=1 Tax=Symbiodinium microadriaticum ... [more]
L1JXG5_GUITC4.170e-850.00Uncharacterized protein n=2 Tax=Geminigeraceae Tax... [more]
A0A7S0Z3C2_9CRYP7.790e-854.24Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A496RDR2_9SPIR1.790e-645.59Hybrid sensor histidine kinase/response regulator ... [more]
UPI00135C30722.470e-639.24ATP-binding protein n=1 Tax=Aquitalea denitrifican... [more]
A0A5J6PA42_9GAMM6.300e-648.44Histidine kinase n=1 Tax=Cellvibrio sp. KY-GH-1 Ta... [more]
A0A3G9GHJ6_9NEIS6.300e-640.51Histidine kinase n=1 Tax=Aquitalea magnusonii TaxI... [more]
A0A1R1JT06_ALCXX6.340e-652.08Histidine kinase n=2 Tax=Alcaligenes xylosoxydans ... [more]
UPI001667893C8.740e-646.58response regulator n=1 Tax=Dyadobacter endophyticu... [more]
A0A850Q2J1_9BACT1.140e-552.08Histidine kinase domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig10contigF-serratus_M_contig10:1228613..1229300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928787.076948-CDS-F-serratus_M_contig10:1228612..12287011622928787.076948-CDS-F-serratus_M_contig10:1228612..1228701Fucus serratus maleCDSF-serratus_M_contig10 1228613..1228701 -
1690962571.1550884-CDS-F-serratus_M_contig10:1228612..12287011690962571.1550884-CDS-F-serratus_M_contig10:1228612..1228701Fucus serratus maleCDSF-serratus_M_contig10 1228613..1228701 -
1622928787.0910602-CDS-F-serratus_M_contig10:1229113..12293001622928787.0910602-CDS-F-serratus_M_contig10:1229113..1229300Fucus serratus maleCDSF-serratus_M_contig10 1229114..1229300 -
1690962571.1664152-CDS-F-serratus_M_contig10:1229113..12293001690962571.1664152-CDS-F-serratus_M_contig10:1229113..1229300Fucus serratus maleCDSF-serratus_M_contig10 1229114..1229300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig10.95.1prot_F-serratus_M_contig10.95.1Fucus serratus malepolypeptideF-serratus_M_contig10 1228613..1229300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig10.95.1

>prot_F-serratus_M_contig10.95.1 ID=prot_F-serratus_M_contig10.95.1|Name=mRNA_F-serratus_M_contig10.95.1|organism=Fucus serratus male|type=polypeptide|length=92bp
MSPRESSASKPPSPCSAGSVESDDDEQDMLLFCVKDTGIGVTDELKPRLF
KAFTQLQSMQSIGTGLGLYSVLQKALRLRGTCGIWDNFDAGS
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mRNA from alignment at F-serratus_M_contig10:1228613..1229300-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig10.95.1 ID=mRNA_F-serratus_M_contig10.95.1|Name=mRNA_F-serratus_M_contig10.95.1|organism=Fucus serratus male|type=mRNA|length=688bp|location=Sequence derived from alignment at F-serratus_M_contig10:1228613..1229300- (Fucus serratus male)
ATGAGCCCAAGAGAGTCCTCTGCGAGCAAGCCTCCCAGCCCTTGCTCGGC AGGGTCAGTGGAGTCCGACGACGACGAGCAGGATATGCTGCTTTTCTGTG TGAAGGATACGGGAATCGGGGTGACGGACGAATTGAAGCCGCGCTTGTTC AAGGCATTCACGCAGCTGCAGAGCATGCAGAGCATCGGTAATCACTACCG CGTTCGCGGTCTTGGAGTTCGAGGCTATACTTAGATCGTTGAGAAAGGAA AAGGGTTTTAAATTGAGAGAGGGTTCCTGCTTGTTTCTCCCTTCGGCTCG AGGATATCAAAACAGGTCAAAAACATAACACACGCGCACACTTATGCACG CCCAGAGCTTATTTCTTGTGGGGCATCTTCATGCTGTCAACTCACACCTT TGCTCCCGCCGACGATGATCGAACCGCTCGGTGACAAGCTACATCATCAC TCGCTCACAGCATTGGAGTTTTTACCCTCCGTACTGTCGAGAGGTTGCGG CGCATCCTCTACGTCCGATTCGTTCCCGTGTCAGTCCGTCTAATATCCCT CCATGTTATCCCTCGTTCCGTCTGACGGGGGGGGTGGGGCAACCGATAGG GACCGGGCTAGGCCTCTACTCGGTATTACAGAAGGCGCTGCGGCTGCGCG GGACCTGCGGGATTTGGGACAACTTTGATGCGGGCAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig10:1228613..1229300-

>mRNA_F-serratus_M_contig10.95.1 ID=mRNA_F-serratus_M_contig10.95.1|Name=mRNA_F-serratus_M_contig10.95.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig10:1228613..1229300- (Fucus serratus male)
ATGAGCCCAAGAGAGTCCTCTGCGAGCAAGCCTCCCAGCCCTTGCTCGGC
AGGGTCAGTGGAGTCCGACGACGACGAGCAGGATATGCTGCTTTTCTGTG
TGAAGGATACGGGAATCGGGGTGACGGACGAATTGAAGCCGCGCTTGTTC
AAGGCATTCACGCAGCTGCAGAGCATGCAGAGCATCGATGAGCCCAAGAG
AGTCCTCTGCGAGCAAGCCTCCCAGCCCTTGCTCGGCAGGGTCAGTGGAG
TCCGACGACGACGAGCAGGATATGCTGCTTTTCTGTGTGAAGGATACGGG
AATCGGGGTGACGGACGAATTGAAGCCGCGCTTGTTCAAGGCATTCACGC
AGCTGCAGAGCATGCAGAGCATCGGGACCGGGCTAGGCCTCTACTCGGTA
TTACAGAAGGCGCTGCGGCTGCGCGGGACCTGCGGGATTTGGGACAACTT
TGATGCGGGCAGCGGACCGGGCTAGGCCTCTACTCGGTATTACAGAAGGC
GCTGCGGCTGCGCGGGACCTGCGGGATTTGGGACAACTTTGATGCGGGCA
GC
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