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Homology
BLAST of mRNA_F-serratus_M_contig10.84.1 vs. uniprot
Match: D7FJD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJD2_ECTSI) HSP 1 Score: 156 bits (394), Expect = 1.230e-41 Identity = 85/122 (69.67%), Postives = 106/122 (86.89%), Query Frame = 3
Query: 21 RLEEQAVWARERRHLRLQEREEAEARVSTFEPTLSRGTESLARRRPELGAPFEQRRSIMEGKAKERQRRRLAERAQQEKSWFNPPTARQTEALLRRRMPQRLEETVEQRVSRMASPEDKRRR 386
RL+EQA+WARERR LR+QE EEAEAR+STFEP++SRGT+SL R+RP+L APFEQRR+IM+ K KER+R R RA++E WFNP TA++T+ALLRRRMP+RLEETVE+RV RMA+ +D RRR
Sbjct: 553 RLQEQAMWARERRRLRVQEHEEAEARMSTFEPSISRGTKSLVRKRPDLQAPFEQRRAIMDAKRKERERLRQEARAKEETGWFNPTTAQRTDALLRRRMPERLEETVEERVKRMAAADDHRRR 674
BLAST of mRNA_F-serratus_M_contig10.84.1 vs. uniprot
Match: A0A836CJI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI8_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.090e-14 Identity = 45/90 (50.00%), Postives = 64/90 (71.11%), Query Frame = 3
Query: 93 ARVSTFEPTLSRGTESLARRRPELGAPFEQRRSIMEGKAKERQRRRLAERAQQEKSWFNPPTARQTEALLRRRMPQRLEETVEQRVSRMA 362
A +TF P LS GT+ L RRR EL APFE+R++ +E ++++R RL ++E +WF P TA +++AL+RRRMP+R ET EQR +RMA
Sbjct: 258 AAENTFTPELSAGTQRLVRRRRELRAPFEERQAALEARSRQRGAARLRCEREREAAWFTPATAPRSDALVRRRMPERARETPEQRCTRMA 347
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 157.1 |
Seed ortholog evalue | 5.3e-36 |
Seed eggNOG ortholog | 2880.D7FJD2 |
KEGG ko | ko:K18626 |
Hectar predicted targeting category | other localisation |
EggNOG OGs | 2CMDY@1,2S3XU@2759 |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko04812 |
Exons | 3 |
Model size | 389 |
Cds size | 384 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928785.6362057-UTR-F-serratus_M_contig10:720038..720043 | 1622928785.6362057-UTR-F-serratus_M_contig10:720038..720043 | Fucus serratus male | UTR | F-serratus_M_contig10 720039..720043 + |
1690962570.2219744-UTR-F-serratus_M_contig10:720038..720043 | 1690962570.2219744-UTR-F-serratus_M_contig10:720038..720043 | Fucus serratus male | UTR | F-serratus_M_contig10 720039..720043 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928785.6485784-CDS-F-serratus_M_contig10:720043..720124 | 1622928785.6485784-CDS-F-serratus_M_contig10:720043..720124 | Fucus serratus male | CDS | F-serratus_M_contig10 720044..720124 + |
1690962570.2384787-CDS-F-serratus_M_contig10:720043..720124 | 1690962570.2384787-CDS-F-serratus_M_contig10:720043..720124 | Fucus serratus male | CDS | F-serratus_M_contig10 720044..720124 + |
1622928785.6621788-CDS-F-serratus_M_contig10:720514..720670 | 1622928785.6621788-CDS-F-serratus_M_contig10:720514..720670 | Fucus serratus male | CDS | F-serratus_M_contig10 720515..720670 + |
1690962570.2494318-CDS-F-serratus_M_contig10:720514..720670 | 1690962570.2494318-CDS-F-serratus_M_contig10:720514..720670 | Fucus serratus male | CDS | F-serratus_M_contig10 720515..720670 + |
1622928785.6808727-CDS-F-serratus_M_contig10:721148..721295 | 1622928785.6808727-CDS-F-serratus_M_contig10:721148..721295 | Fucus serratus male | CDS | F-serratus_M_contig10 721149..721295 + |
1690962570.2671402-CDS-F-serratus_M_contig10:721148..721295 | 1690962570.2671402-CDS-F-serratus_M_contig10:721148..721295 | Fucus serratus male | CDS | F-serratus_M_contig10 721149..721295 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig10.84.1 >prot_F-serratus_M_contig10.84.1 ID=prot_F-serratus_M_contig10.84.1|Name=mRNA_F-serratus_M_contig10.84.1|organism=Fucus serratus male|type=polypeptide|length=128bp
MSVVARLEEQAVWARERRHLRLQEREEAEARVSTFEPTLSRGTESLARRR PELGAPFEQRRSIMEGKAKERQRRRLAERAQQEKSWFNPPTARQTEALLR RRMPQRLEETVEQRVSRMASPEDKRRR* back to topmRNA from alignment at F-serratus_M_contig10:720039..721295+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig10.84.1 ID=mRNA_F-serratus_M_contig10.84.1|Name=mRNA_F-serratus_M_contig10.84.1|organism=Fucus serratus male|type=mRNA|length=1257bp|location=Sequence derived from alignment at F-serratus_M_contig10:720039..721295+ (Fucus serratus male) GCGGAATGTCCGTGGTTGCACGGCTGGAGGAACAGGCGGTCTGGGCAAGA
GAGCGACGGCATCTCCGGCTTCAGGAACGCGAAGAGGTAATATCACGCGT
GCGCACGTTCGGTGTGTGTGTTCATGATCATGTTGGGGGGAAGGGGCGCG
ATTGGTGAATAGGGACCGAGGTATAGAGAATTGTGTCGAGCATCGAAGAA
GGGGGGCGTTGGCGACGTATGGAAGTCGACGAGAGGGCATGTGCTCACGT
GCGATGAACAATCGCATCCCCCCTCCAACTCTCGCTTCGCTGAACGGGGG
ACGCACTTCAATCGCGGTACCCGCTTTTCGGGGGCGGGCTCGCCGACCTC
TTACAGTAGTACTTGCGCTGGATCGAACCATGATATGTTTACCATAAACG
ACTTCGTGTCCTCGACACGGCTGCTCTTCGTGGTACGGACTTTTCTCGGG
CGGGGGGGGGGGGCATGAATGCTCAGGCGGAAGCCCGCGTCAGCACGTTC
GAGCCCACGTTAAGCCGGGGCACGGAGTCACTCGCGCGAAGGCGACCGGA
GCTCGGGGCCCCGTTCGAACAGCGACGGTCCATCATGGAGGGCAAGGCAA
AAGAGAGACAACGTCGTCGTCTCGCCGAGCGAGTAAGTTACAGTGGATTG
CTGGCTGGATGGCCTTATGATATACGCCTGGAGGAGTGCTGCGTTTTGCG
GTACCGTAATCAATAGCTGCAATATGCCTGTGATGGTGTTCTCTCTCTCT
CCCTTTTTTCAATTTTTACTTTGATCGACTCACCGAGTAGCGCCGCGGTT
CAATTTTGCTGATTTGCTACGATCTACTTCCTATTAGCGTGCCTTCAGGT
TATATAGTGGGAAACAAGAAGTTTTTGTTTTTTACGAGATTCAGAAATCG
AAAGCGAAGACGACAAAAAGAAAAGACAAAAAAGAGAGTCAATGAGACTT
CGACGCACTGTACACTCGTCCTCGGTAATCCAGATACCGCAAAAAATGCC
TCCAAGTTTAAGCACCTCCACCCCTTCCCGCGCCCTGGTGTTGGGGCGCG
GCTCATCCTGTTTTTGGCCCTTGTCCTTACGGCACATGTGCACGTTGCTG
GGCAAACAAGGCCCAACAAGAAAAAAGCTGGTTCAACCCACCCACCGCTC
GGCAGACGGAGGCGTTACTCCGCCGCCGCATGCCGCAAAGGCTCGAAGAG
ACCGTGGAGCAGCGGGTGTCTAGAATGGCGAGCCCCGAGGACAAACGCCG
ACGGTGA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig10:720039..721295+ >mRNA_F-serratus_M_contig10.84.1 ID=mRNA_F-serratus_M_contig10.84.1|Name=mRNA_F-serratus_M_contig10.84.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig10:720039..721295+ (Fucus serratus male) ATGTCCGTGGTTGCACGGCTGGAGGAACAGGCGGTCTGGGCAAGAGAGCG ACGGCATCTCCGGCTTCAGGAACGCGAAGAGATGTCCGTGGTTGCACGGC TGGAGGAACAGGCGGTCTGGGCAAGAGAGCGACGGCATCTCCGGCTTCAG GAACGCGAAGAGGCGGAAGCCCGCGTCAGCACGTTCGAGCCCACGTTAAG CCGGGGCACGGAGTCACTCGCGCGAAGGCGACCGGAGCTCGGGGCCCCGT TCGAACAGCGACGGTCCATCATGGAGGGCAAGGCAAAAGAGAGACAACGT CGTCGTCTCGCCGAGCGAGCGGAAGCCCGCGTCAGCACGTTCGAGCCCAC GTTAAGCCGGGGCACGGAGTCACTCGCGCGAAGGCGACCGGAGCTCGGGG CCCCGTTCGAACAGCGACGGTCCATCATGGAGGGCAAGGCAAAAGAGAGA CAACGTCGTCGTCTCGCCGAGCGAGCCCAACAAGAAAAAAGCTGGTTCAA CCCACCCACCGCTCGGCAGACGGAGGCGTTACTCCGCCGCCGCATGCCGC AAAGGCTCGAAGAGACCGTGGAGCAGCGGGTGTCTAGAATGGCGAGCCCC GAGGACAAACGCCGACGGTGAGCCCAACAAGAAAAAAGCTGGTTCAACCC ACCCACCGCTCGGCAGACGGAGGCGTTACTCCGCCGCCGCATGCCGCAAA GGCTCGAAGAGACCGTGGAGCAGCGGGTGTCTAGAATGGCGAGCCCCGAG GACAAACGCCGACGGTGA back to top
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