mRNA_F-serratus_M_contig10.84.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig10.84.1
Unique NamemRNA_F-serratus_M_contig10.84.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig10.84.1 vs. uniprot
Match: D7FJD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJD2_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.230e-41
Identity = 85/122 (69.67%), Postives = 106/122 (86.89%), Query Frame = 3 
Query:   21 RLEEQAVWARERRHLRLQEREEAEARVSTFEPTLSRGTESLARRRPELGAPFEQRRSIMEGKAKERQRRRLAERAQQEKSWFNPPTARQTEALLRRRMPQRLEETVEQRVSRMASPEDKRRR 386
            RL+EQA+WARERR LR+QE EEAEAR+STFEP++SRGT+SL R+RP+L APFEQRR+IM+ K KER+R R   RA++E  WFNP TA++T+ALLRRRMP+RLEETVE+RV RMA+ +D RRR
Sbjct:  553 RLQEQAMWARERRRLRVQEHEEAEARMSTFEPSISRGTKSLVRKRPDLQAPFEQRRAIMDAKRKERERLRQEARAKEETGWFNPTTAQRTDALLRRRMPERLEETVEERVKRMAAADDHRRR 674
[Close]
BLAST of mRNA_F-serratus_M_contig10.84.1 vs. uniprot
Match: A0A836CJI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.090e-14
Identity = 45/90 (50.00%), Postives = 64/90 (71.11%), Query Frame = 3 
Query:   93 ARVSTFEPTLSRGTESLARRRPELGAPFEQRRSIMEGKAKERQRRRLAERAQQEKSWFNPPTARQTEALLRRRMPQRLEETVEQRVSRMA 362
            A  +TF P LS GT+ L RRR EL APFE+R++ +E ++++R   RL    ++E +WF P TA +++AL+RRRMP+R  ET EQR +RMA
Sbjct:  258 AAENTFTPELSAGTQRLVRRRRELRAPFEERQAALEARSRQRGAARLRCEREREAAWFTPATAPRSDALVRRRMPERARETPEQRCTRMA 347
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig10.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJD2_ECTSI1.230e-4169.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CJI8_9STRA1.090e-1450.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig10contigF-serratus_M_contig10:720039..721295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue5.3e-36
Seed eggNOG ortholog2880.D7FJD2
KEGG koko:K18626
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMDY@1,2S3XU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons3
Model size389
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig10.84.1prot_F-serratus_M_contig10.84.1Fucus serratus malepolypeptideF-serratus_M_contig10 720044..721295 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928785.6362057-UTR-F-serratus_M_contig10:720038..7200431622928785.6362057-UTR-F-serratus_M_contig10:720038..720043Fucus serratus maleUTRF-serratus_M_contig10 720039..720043 +
1690962570.2219744-UTR-F-serratus_M_contig10:720038..7200431690962570.2219744-UTR-F-serratus_M_contig10:720038..720043Fucus serratus maleUTRF-serratus_M_contig10 720039..720043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928785.6485784-CDS-F-serratus_M_contig10:720043..7201241622928785.6485784-CDS-F-serratus_M_contig10:720043..720124Fucus serratus maleCDSF-serratus_M_contig10 720044..720124 +
1690962570.2384787-CDS-F-serratus_M_contig10:720043..7201241690962570.2384787-CDS-F-serratus_M_contig10:720043..720124Fucus serratus maleCDSF-serratus_M_contig10 720044..720124 +
1622928785.6621788-CDS-F-serratus_M_contig10:720514..7206701622928785.6621788-CDS-F-serratus_M_contig10:720514..720670Fucus serratus maleCDSF-serratus_M_contig10 720515..720670 +
1690962570.2494318-CDS-F-serratus_M_contig10:720514..7206701690962570.2494318-CDS-F-serratus_M_contig10:720514..720670Fucus serratus maleCDSF-serratus_M_contig10 720515..720670 +
1622928785.6808727-CDS-F-serratus_M_contig10:721148..7212951622928785.6808727-CDS-F-serratus_M_contig10:721148..721295Fucus serratus maleCDSF-serratus_M_contig10 721149..721295 +
1690962570.2671402-CDS-F-serratus_M_contig10:721148..7212951690962570.2671402-CDS-F-serratus_M_contig10:721148..721295Fucus serratus maleCDSF-serratus_M_contig10 721149..721295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig10.84.1

>prot_F-serratus_M_contig10.84.1 ID=prot_F-serratus_M_contig10.84.1|Name=mRNA_F-serratus_M_contig10.84.1|organism=Fucus serratus male|type=polypeptide|length=128bp
MSVVARLEEQAVWARERRHLRLQEREEAEARVSTFEPTLSRGTESLARRR
PELGAPFEQRRSIMEGKAKERQRRRLAERAQQEKSWFNPPTARQTEALLR
RRMPQRLEETVEQRVSRMASPEDKRRR*
back to top

mRNA from alignment at F-serratus_M_contig10:720039..721295+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig10.84.1 ID=mRNA_F-serratus_M_contig10.84.1|Name=mRNA_F-serratus_M_contig10.84.1|organism=Fucus serratus male|type=mRNA|length=1257bp|location=Sequence derived from alignment at F-serratus_M_contig10:720039..721295+ (Fucus serratus male)
GCGGAATGTCCGTGGTTGCACGGCTGGAGGAACAGGCGGTCTGGGCAAGA
GAGCGACGGCATCTCCGGCTTCAGGAACGCGAAGAGGTAATATCACGCGT
GCGCACGTTCGGTGTGTGTGTTCATGATCATGTTGGGGGGAAGGGGCGCG
ATTGGTGAATAGGGACCGAGGTATAGAGAATTGTGTCGAGCATCGAAGAA
GGGGGGCGTTGGCGACGTATGGAAGTCGACGAGAGGGCATGTGCTCACGT
GCGATGAACAATCGCATCCCCCCTCCAACTCTCGCTTCGCTGAACGGGGG
ACGCACTTCAATCGCGGTACCCGCTTTTCGGGGGCGGGCTCGCCGACCTC
TTACAGTAGTACTTGCGCTGGATCGAACCATGATATGTTTACCATAAACG
ACTTCGTGTCCTCGACACGGCTGCTCTTCGTGGTACGGACTTTTCTCGGG
CGGGGGGGGGGGGCATGAATGCTCAGGCGGAAGCCCGCGTCAGCACGTTC
GAGCCCACGTTAAGCCGGGGCACGGAGTCACTCGCGCGAAGGCGACCGGA
GCTCGGGGCCCCGTTCGAACAGCGACGGTCCATCATGGAGGGCAAGGCAA
AAGAGAGACAACGTCGTCGTCTCGCCGAGCGAGTAAGTTACAGTGGATTG
CTGGCTGGATGGCCTTATGATATACGCCTGGAGGAGTGCTGCGTTTTGCG
GTACCGTAATCAATAGCTGCAATATGCCTGTGATGGTGTTCTCTCTCTCT
CCCTTTTTTCAATTTTTACTTTGATCGACTCACCGAGTAGCGCCGCGGTT
CAATTTTGCTGATTTGCTACGATCTACTTCCTATTAGCGTGCCTTCAGGT
TATATAGTGGGAAACAAGAAGTTTTTGTTTTTTACGAGATTCAGAAATCG
AAAGCGAAGACGACAAAAAGAAAAGACAAAAAAGAGAGTCAATGAGACTT
CGACGCACTGTACACTCGTCCTCGGTAATCCAGATACCGCAAAAAATGCC
TCCAAGTTTAAGCACCTCCACCCCTTCCCGCGCCCTGGTGTTGGGGCGCG
GCTCATCCTGTTTTTGGCCCTTGTCCTTACGGCACATGTGCACGTTGCTG
GGCAAACAAGGCCCAACAAGAAAAAAGCTGGTTCAACCCACCCACCGCTC
GGCAGACGGAGGCGTTACTCCGCCGCCGCATGCCGCAAAGGCTCGAAGAG
ACCGTGGAGCAGCGGGTGTCTAGAATGGCGAGCCCCGAGGACAAACGCCG
ACGGTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig10:720039..721295+

>mRNA_F-serratus_M_contig10.84.1 ID=mRNA_F-serratus_M_contig10.84.1|Name=mRNA_F-serratus_M_contig10.84.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig10:720039..721295+ (Fucus serratus male)
ATGTCCGTGGTTGCACGGCTGGAGGAACAGGCGGTCTGGGCAAGAGAGCG
ACGGCATCTCCGGCTTCAGGAACGCGAAGAGATGTCCGTGGTTGCACGGC
TGGAGGAACAGGCGGTCTGGGCAAGAGAGCGACGGCATCTCCGGCTTCAG
GAACGCGAAGAGGCGGAAGCCCGCGTCAGCACGTTCGAGCCCACGTTAAG
CCGGGGCACGGAGTCACTCGCGCGAAGGCGACCGGAGCTCGGGGCCCCGT
TCGAACAGCGACGGTCCATCATGGAGGGCAAGGCAAAAGAGAGACAACGT
CGTCGTCTCGCCGAGCGAGCGGAAGCCCGCGTCAGCACGTTCGAGCCCAC
GTTAAGCCGGGGCACGGAGTCACTCGCGCGAAGGCGACCGGAGCTCGGGG
CCCCGTTCGAACAGCGACGGTCCATCATGGAGGGCAAGGCAAAAGAGAGA
CAACGTCGTCGTCTCGCCGAGCGAGCCCAACAAGAAAAAAGCTGGTTCAA
CCCACCCACCGCTCGGCAGACGGAGGCGTTACTCCGCCGCCGCATGCCGC
AAAGGCTCGAAGAGACCGTGGAGCAGCGGGTGTCTAGAATGGCGAGCCCC
GAGGACAAACGCCGACGGTGAGCCCAACAAGAAAAAAGCTGGTTCAACCC
ACCCACCGCTCGGCAGACGGAGGCGTTACTCCGCCGCCGCATGCCGCAAA
GGCTCGAAGAGACCGTGGAGCAGCGGGTGTCTAGAATGGCGAGCCCCGAG
GACAAACGCCGACGGTGA
back to top