mRNA_F-serratus_M_contig10.62.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig10.62.1
Unique NamemRNA_F-serratus_M_contig10.62.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig10.62.1 vs. uniprot
Match: A0A6H5KYH6_9PHAE (Vps54_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.890e-30
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:    7 NSSGGDGVGS----GDNLRRDLQLVVKGLLRLGEMEKVLGVVQDRLSEDLKQIIRTVVGDFLATTDDSGELMDTFHLFSDET 240
            N  GGD  G+    GD LRRDL+LVV+GLLRLGEME+VLG+VQDR+SEDLK IIRTVVGDFLATTDDSGELMDTFHLF DE+
Sbjct:  512 NGRGGDAGGAISAGGDELRRDLELVVQGLLRLGEMERVLGIVQDRVSEDLKLIIRTVVGDFLATTDDSGELMDTFHLFGDES 593
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BLAST of mRNA_F-serratus_M_contig10.62.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 3.710e-29
Identity = 62/82 (75.61%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:    7 NSSGGDGVGS----GDNLRRDLQLVVKGLLRLGEMEKVLGVVQDRLSEDLKQIIRTVVGDFLATTDDSGELMDTFHLFSDET 240
            N  GG+  G+    GD +RRDL+LVV+GLLRLGEME+VLGVVQDR+SEDLK IIRTVVGDFLATTDD+GELMDTFHLF DE+
Sbjct:  427 NGRGGEAGGAISAGGDEMRRDLELVVQGLLRLGEMERVLGVVQDRVSEDLKLIIRTVVGDFLATTDDAGELMDTFHLFGDES 508
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BLAST of mRNA_F-serratus_M_contig10.62.1 vs. uniprot
Match: A0A835YJU9_9STRA (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.020e-11
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:   43 NLRRDLQLVVKGLLRLGEMEKVLGVVQDRLSEDLKQIIRTVVGDFLATTDDSGELMDTFHLFSDETEGGGE 255
            +L   L  VV+ + RLG++EKVL + ++RL EDLK IIRTVVGD+L TT   GEL+DT+ L   + +GGG+
Sbjct:  440 DLEAALVPVVQAVERLGKLEKVLDMFEERLLEDLKLIIRTVVGDYLNTTGTGGELIDTYPLDDSDDDGGGD 510
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig10.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KYH6_9PHAE2.890e-3078.05Vps54_N domain-containing protein n=1 Tax=Ectocarp... [more]
D7G0A0_ECTSI3.710e-2975.61Vacuolar protein sorting-associated protein 54 n=1... [more]
A0A835YJU9_9STRA1.020e-1152.11Vacuolar protein sorting-associated protein 54 (Fr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig10contigF-serratus_M_contig10:293111..293913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue5.4e-24
Seed eggNOG ortholog2880.D7G0A0
Preferred nameVPS54
KEGG koko:K10357,ko:K17600
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000138,GO:0000139,GO:0000149,GO:0000938,GO:0001675,GO:0001894,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005794,GO:0005795,GO:0005802,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006996,GO:0006997,GO:0007010,GO:0007034,GO:0007041,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0009272,GO:0009507,GO:0009536,GO:0009653,GO:0009987,GO:0010256,GO:0010927,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019725,GO:0019905,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0030476,GO:0031090,GO:0031410,GO:0031505,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0031985,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032588,GO:0032989,GO:0032991,GO:0033036,GO:0033363,GO:0034293,GO:0034613,GO:0040008,GO:0042147,GO:0042244,GO:0042546,GO:0042592,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043934,GO:0043935,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045103,GO:0045104,GO:0045184,GO:0045229,GO:0046907,GO:0048193,GO:0048232,GO:0048468,GO:0048471,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048873,GO:0048878,GO:0050789,GO:0050879,GO:0050881,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0055082,GO:0055088,GO:0060052,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070590,GO:0070591,GO:0070726,GO:0070727,GO:0070925,GO:0071554,GO:0071555,GO:0071702,GO:0071705,GO:0071840,GO:0071852,GO:0071940,GO:0090156,GO:0097708,GO:0098588,GO:0098791,GO:0099023,GO:1903046
EggNOG free text desc.Vacuolar protein sorting-associated protein
EggNOG OGsKOG2115@1,KOG2115@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03019,ko03029,ko04131,ko04812
Exons2
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928782.5711582-CDS-F-serratus_M_contig10:293112..2932121622928782.5711582-CDS-F-serratus_M_contig10:293112..293212Fucus serratus maleCDSF-serratus_M_contig10 293113..293212 -
1690962568.6076431-CDS-F-serratus_M_contig10:293112..2932121690962568.6076431-CDS-F-serratus_M_contig10:293112..293212Fucus serratus maleCDSF-serratus_M_contig10 293113..293212 -
1622928782.5834415-CDS-F-serratus_M_contig10:293755..2939131622928782.5834415-CDS-F-serratus_M_contig10:293755..293913Fucus serratus maleCDSF-serratus_M_contig10 293756..293913 -
1690962568.6196404-CDS-F-serratus_M_contig10:293755..2939131690962568.6196404-CDS-F-serratus_M_contig10:293755..293913Fucus serratus maleCDSF-serratus_M_contig10 293756..293913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig10.62.1prot_F-serratus_M_contig10.62.1Fucus serratus malepolypeptideF-serratus_M_contig10 293113..293913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig10.62.1

>prot_F-serratus_M_contig10.62.1 ID=prot_F-serratus_M_contig10.62.1|Name=mRNA_F-serratus_M_contig10.62.1|organism=Fucus serratus male|type=polypeptide|length=86bp
GANSSGGDGVGSGDNLRRDLQLVVKGLLRLGEMEKVLGVVQDRLSEDLKQ
IIRTVVGDFLATTDDSGELMDTFHLFSDETEGGGES
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mRNA from alignment at F-serratus_M_contig10:293111..293913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig10.62.1 ID=mRNA_F-serratus_M_contig10.62.1|Name=mRNA_F-serratus_M_contig10.62.1|organism=Fucus serratus male|type=mRNA|length=803bp|location=Sequence derived from alignment at F-serratus_M_contig10:293111..293913- (Fucus serratus male)
GGGGCAAACAGCAGCGGGGGCGACGGCGTCGGTAGTGGAGATAACCTCCG
ACGGGATCTGCAGCTCGTGGTGAAGGGGCTCTTGAGGCTCGGGGAGATGG
AGAAAGTGCTCGGAGTTGTCCAGGACCGATTGTCAGAGGACCTTAAGCAG
ATCATCAGGTGCGTCTGGTTAAGAGCAAAGGCGGGGGTAAGAAATGGGAT
GCGGAATGGGAAGGAGATTTGTATACGTAGTGTAATATAATGGGTTGTAT
TGCTTTTATGTGGAACGGAAATGGGATGTGGAATTGCACGAGGAACGGGA
TGGGATGGATTGGATGGCTCCTTTATGGAGCATTGGGAATTTGACTCTTG
TTTGGAATGAAGTGCTGTGAATGAAACTCGTTGCTTGGGTCGTTCAACGT
TTCACTTGTGTTTAGTTTCCCCCCCTTTGACGGCTTTCCAGGTAGGAGCA
GAAGTAGAGACTGCCAATCCGTTACAGCTCTACGCACAACGTCTGCGCTG
TGGGATGTGCTGAACGCACGGGCGAGATCTTGGATGAATTAACCCACACT
TGACAGTCCTGCGATGTTTGTGGAGTTTCATTTTTTGTCGGCGGGGGGGG
GGGAGGGGGGGATAATTCGCCCCTTTCTCTTTCTATGGTGGATGTTCTCC
TGTGTGCGACGTCGTTCCTCCTTTGCCTCTTGCTCGCGACGTCGCAATAA
GGACGGTGGTGGGAGACTTTTTGGCGACGACGGACGACTCCGGAGAGTTG
ATGGACACCTTCCATCTCTTCAGTGACGAAACCGAAGGCGGGGGAGAGAG
TGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig10:293111..293913-

>mRNA_F-serratus_M_contig10.62.1 ID=mRNA_F-serratus_M_contig10.62.1|Name=mRNA_F-serratus_M_contig10.62.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig10:293111..293913- (Fucus serratus male)
GGGGCAAACAGCAGCGGGGGCGACGGCGTCGGTAGTGGAGATAACCTCCG
ACGGGATCTGCAGCTCGTGGTGAAGGGGCTCTTGAGGCTCGGGGAGATGG
AGAAAGTGCTCGGAGTTGTCCAGGACCGATTGTCAGAGGACCTTAAGCAG
ATCATCAGGGGGCAAACAGCAGCGGGGGCGACGGCGTCGGTAGTGGAGAT
AACCTCCGACGGGATCTGCAGCTCGTGGTGAAGGGGCTCTTGAGGCTCGG
GGAGATGGAGAAAGTGCTCGGAGTTGTCCAGGACCGATTGTCAGAGGACC
TTAAGCAGATCATCAGGACGGTGGTGGGAGACTTTTTGGCGACGACGGAC
GACTCCGGAGAGTTGATGGACACCTTCCATCTCTTCAGTGACGAAACCGA
AGGCGGGGGAGAGAGTGACGGTGGTGGGAGACTTTTTGGCGACGACGGAC
GACTCCGGAGAGTTGATGGACACCTTCCATCTCTTCAGTGACGAAACCGA
AGGCGGGGGAGAGAGT
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