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Homology
BLAST of mRNA_F-serratus_M_contig10.61.1 vs. uniprot
Match: A0A6H5KYH6_9PHAE (Vps54_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH6_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 6.720e-17 Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 2
Query: 11 NGDQARASAAADGQKMPKLKALDGEAFSSCLEMCFEHMLSVLTRVSQIHAALASIVDSC 187
+G+Q A AAA GQ + KLK LDGEAF SCLEMCFEHMLSVLTRVSQ+H AL+SIVD+C
Sbjct: 623 DGEQGTA-AAAGGQSVAKLKTLDGEAFCSCLEMCFEHMLSVLTRVSQMHEALSSIVDAC 680
BLAST of mRNA_F-serratus_M_contig10.61.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI) HSP 1 Score: 51.6 bits (122), Expect = 1.620e-5 Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 2
Query: 11 NGDQARASAAADGQKMPKLKALDGEAFSSCLEMCFEHM 124
+G+Q A AAA GQ + KLK LDGEAF SCLEMCFEHM
Sbjct: 534 DGEQGTA-AAAGGQSVAKLKTLDGEAFCSCLEMCFEHM 570
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 281 |
Cds size | 279 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928780.5122483-CDS-F-serratus_M_contig10:290991..291146 | 1622928780.5122483-CDS-F-serratus_M_contig10:290991..291146 | Fucus serratus male | CDS | F-serratus_M_contig10 290992..291146 - |
1690962567.1930678-CDS-F-serratus_M_contig10:290991..291146 | 1690962567.1930678-CDS-F-serratus_M_contig10:290991..291146 | Fucus serratus male | CDS | F-serratus_M_contig10 290992..291146 - |
1622928780.5243654-CDS-F-serratus_M_contig10:292968..293092 | 1622928780.5243654-CDS-F-serratus_M_contig10:292968..293092 | Fucus serratus male | CDS | F-serratus_M_contig10 292969..293092 - |
1690962567.2062492-CDS-F-serratus_M_contig10:292968..293092 | 1690962567.2062492-CDS-F-serratus_M_contig10:292968..293092 | Fucus serratus male | CDS | F-serratus_M_contig10 292969..293092 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig10.61.1 >prot_F-serratus_M_contig10.61.1 ID=prot_F-serratus_M_contig10.61.1|Name=mRNA_F-serratus_M_contig10.61.1|organism=Fucus serratus male|type=polypeptide|length=93bp
RRCERRPGEGLGGSGRAKDAEAESAGRGGVLLVLGDVLRAHALRADTGLA DSRRVGVHRGFVHQPRRRRAQGEWRWARGVSRRRQAVTGLGRA back to topmRNA from alignment at F-serratus_M_contig10:290990..293092- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig10.61.1 ID=mRNA_F-serratus_M_contig10.61.1|Name=mRNA_F-serratus_M_contig10.61.1|organism=Fucus serratus male|type=mRNA|length=2103bp|location=Sequence derived from alignment at F-serratus_M_contig10:290990..293092- (Fucus serratus male) CGAAGATGCGAACGGCGACCAGGCGAGGGCCTCGGCGGCAGCGGACGGGC
AAAAGATGCCGAAGCTGAAAGCGCTGGACGGGGAGGCGTTCTCCTCGTGC
TTGGAGATGTGCTTCGAGCACATGGTGCGTGAGAGAGGCGTTTGTATGTC
TGCATGTATTATGTGGGCATGTATGTACGTGTGTATGTATAATGTATGCA
TGTGTGGTCACACACATAGCAAGATTATGGATCAACCGGGTAAGGTTGCT
AATCCTGCTCGTGGTTGGCTGGACAGGGAAATATTTATTTTCCCCGTCCG
CGTTCGCGCCTGAGGATTTGGTCTCGCGAGACGGATTCGGCAGTTCCGTC
CCGCGTCAGCCTGCTCGTCTGCATACTCAGGCTGAATCTGGTGCTTACTT
ACGGGATTCCTCCCGAGTTTCGCGGCGGCGTCCATTAATTTATTTAAACC
GCCATATGCCCTCGGGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCTT
ACCGATGGCGTTCACTCCCGAGAGTACGCCGGCACAGGGCCAGTAAACCT
CAAGGTAGTTCCGAACGAGTGCTGCCTTGGCAGGTCACCATGGACCAATT
AATATACGCCTCTCTTTCCCACACCCACTATTGGTATGAAGTGGGCATGT
TGAAAGTACCGGCGGTATGTGGGTATGTGGATATTCCTGTATTTCTCTCT
CTCTCTCTCCATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT
ATGTATGTATGTGTGTATGTGTGTGCGTATGTATATATGTATGTATGTAC
GTATGCATTATGTGGGTATGTATGTATCTGCGTATATATATGTATGTATC
TATAAAAGTATCTATGCATATTCATATACGTATGTATGTATACGCGTGTG
TATGTATATATCTATATATGTATGTGCGTACATGTATATATAGATGTACG
TATGTACCAGTATGTATTTATGAAATTCCACACAACCGCGCAATCCGGCC
CTGTCATCCTAGTCATTCTATGCCACTCGCACGTATGTAGGTGTGTTTTC
TCTTTTGCTTCTGCGCCTATGGTTTCACCTCCGAGCCTTGCACCCGTGAT
CCCACCACCCACCCACCCTGTGTGCCAGGCCATGTCATGCCACGCCACTT
GGCGCTCGCATTGGCCGCATCGCCCCGGCGTCGTTTAGTCATTTAGTCGT
TTAGTCGGATGAAAGTGATGAAAGAACGCGCGTACGGGATGTGTGTCGTC
CTCATTTTAAATACTTGTGACGAGTATGCGTGTGTGTGTTTGTGTGTGTG
TATCTATTAAATTGCACATCAATATAACGGTGCAATCCAGCCCTGTCGTG
GTGATGGTTGTCACGAAAACATGTGTTTCGTGGGTTTTGTGAGGGTTTTG
TATGTCTCTTTGTCCTTGATCTGTAAGGGGTTCGAACGAACGATAACGAG
CAAAATCACTTTCCCTCTTTGCTCGAGATAGTGGCCGATCTTGTTGTCCA
GTAAACATAACATAAAACGGTCGCTCTCGCGTAGTGAAACCTGGCCGTCG
CCAACACGCGACTTGCAACACCCCTCATCCAAGGAAAACTCTACGCGATT
ACCAGTAGGTCTAATCATTTGTTGAGTTAAGTCATTTGTTACCTGGTATG
TTTTGTTTTGTCTGCTTTTCATTCTTTTTTTAGGTATGTTCGTATGGGGG
GGGGGGGGGAGAAGGGAGAAGGGAGGGAGAAGGGAGGCTTATTTGTTTGT
TTATTAGCCTCAAGCTCAGACAGAGCAACTGTTTGATCCTTGTTTTTCTA
TGCGATCTCACTCTCTCCTGCGTGTTCCGACTTTTCCTCTCCTCTCATAT
TCCGTCCTGTCCTGACCTGTCCTGTCCTTGCACGACGTCCTATACTCTCC
TATCCTACAATGCCTTTGGACGTGTACGTCAACGCTTGGGAGAAAGCTCT
CCGTGCTGACACGGGTCTCGCAGATTCACGCCGCGTTGGCGTCCATCGTG
GATTCGTGCACCAACCCCGGCGGCGAAGAGCCCAAGGAGAATGGCGTTGG
GCAAGAGGAGTTTCGAGGAGAAGGCAGGCGGTTACAGGCCTGGGACGGGC
AGG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig10:290990..293092- >mRNA_F-serratus_M_contig10.61.1 ID=mRNA_F-serratus_M_contig10.61.1|Name=mRNA_F-serratus_M_contig10.61.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig10:290990..293092- (Fucus serratus male) CGAAGATGCGAACGGCGACCAGGCGAGGGCCTCGGCGGCAGCGGACGGGC AAAAGATGCCGAAGCTGAAAGCGCTGGACGGGGAGGCGTTCTCCTCGTGC TTGGAGATGTGCTTCGAGCACATGCGAAGATGCGAACGGCGACCAGGCGA GGGCCTCGGCGGCAGCGGACGGGCAAAAGATGCCGAAGCTGAAAGCGCTG GACGGGGAGGCGTTCTCCTCGTGCTTGGAGATGTGCTTCGAGCACATGCT CTCCGTGCTGACACGGGTCTCGCAGATTCACGCCGCGTTGGCGTCCATCG TGGATTCGTGCACCAACCCCGGCGGCGAAGAGCCCAAGGAGAATGGCGTT GGGCAAGAGGAGTTTCGAGGAGAAGGCAGGCGGTTACAGGCCTGGGACGG GCACTCTCCGTGCTGACACGGGTCTCGCAGATTCACGCCGCGTTGGCGTC CATCGTGGATTCGTGCACCAACCCCGGCGGCGAAGAGCCCAAGGAGAATG GCGTTGGGCAAGAGGAGTTTCGAGGAGAAGGCAGGCGGTTACAGGCCTGG GACGGGCA back to top
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