mRNA_F-serratus_M_contig10.61.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig10.61.1
Unique NamemRNA_F-serratus_M_contig10.61.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig10.61.1 vs. uniprot
Match: A0A6H5KYH6_9PHAE (Vps54_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.720e-17
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 2 
Query:   11 NGDQARASAAADGQKMPKLKALDGEAFSSCLEMCFEHMLSVLTRVSQIHAALASIVDSC 187
            +G+Q  A AAA GQ + KLK LDGEAF SCLEMCFEHMLSVLTRVSQ+H AL+SIVD+C
Sbjct:  623 DGEQGTA-AAAGGQSVAKLKTLDGEAFCSCLEMCFEHMLSVLTRVSQMHEALSSIVDAC 680
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BLAST of mRNA_F-serratus_M_contig10.61.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.620e-5
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:   11 NGDQARASAAADGQKMPKLKALDGEAFSSCLEMCFEHM 124
            +G+Q  A AAA GQ + KLK LDGEAF SCLEMCFEHM
Sbjct:  534 DGEQGTA-AAAGGQSVAKLKTLDGEAFCSCLEMCFEHM 570
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig10.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYH6_9PHAE6.720e-1774.58Vps54_N domain-containing protein n=1 Tax=Ectocarp... [more]
D7G0A0_ECTSI1.620e-571.05Vacuolar protein sorting-associated protein 54 n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig10contigF-serratus_M_contig10:290990..293092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.5122483-CDS-F-serratus_M_contig10:290991..2911461622928780.5122483-CDS-F-serratus_M_contig10:290991..291146Fucus serratus maleCDSF-serratus_M_contig10 290992..291146 -
1690962567.1930678-CDS-F-serratus_M_contig10:290991..2911461690962567.1930678-CDS-F-serratus_M_contig10:290991..291146Fucus serratus maleCDSF-serratus_M_contig10 290992..291146 -
1622928780.5243654-CDS-F-serratus_M_contig10:292968..2930921622928780.5243654-CDS-F-serratus_M_contig10:292968..293092Fucus serratus maleCDSF-serratus_M_contig10 292969..293092 -
1690962567.2062492-CDS-F-serratus_M_contig10:292968..2930921690962567.2062492-CDS-F-serratus_M_contig10:292968..293092Fucus serratus maleCDSF-serratus_M_contig10 292969..293092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig10.61.1prot_F-serratus_M_contig10.61.1Fucus serratus malepolypeptideF-serratus_M_contig10 290992..293092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig10.61.1

>prot_F-serratus_M_contig10.61.1 ID=prot_F-serratus_M_contig10.61.1|Name=mRNA_F-serratus_M_contig10.61.1|organism=Fucus serratus male|type=polypeptide|length=93bp
RRCERRPGEGLGGSGRAKDAEAESAGRGGVLLVLGDVLRAHALRADTGLA
DSRRVGVHRGFVHQPRRRRAQGEWRWARGVSRRRQAVTGLGRA
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mRNA from alignment at F-serratus_M_contig10:290990..293092-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig10.61.1 ID=mRNA_F-serratus_M_contig10.61.1|Name=mRNA_F-serratus_M_contig10.61.1|organism=Fucus serratus male|type=mRNA|length=2103bp|location=Sequence derived from alignment at F-serratus_M_contig10:290990..293092- (Fucus serratus male)
CGAAGATGCGAACGGCGACCAGGCGAGGGCCTCGGCGGCAGCGGACGGGC
AAAAGATGCCGAAGCTGAAAGCGCTGGACGGGGAGGCGTTCTCCTCGTGC
TTGGAGATGTGCTTCGAGCACATGGTGCGTGAGAGAGGCGTTTGTATGTC
TGCATGTATTATGTGGGCATGTATGTACGTGTGTATGTATAATGTATGCA
TGTGTGGTCACACACATAGCAAGATTATGGATCAACCGGGTAAGGTTGCT
AATCCTGCTCGTGGTTGGCTGGACAGGGAAATATTTATTTTCCCCGTCCG
CGTTCGCGCCTGAGGATTTGGTCTCGCGAGACGGATTCGGCAGTTCCGTC
CCGCGTCAGCCTGCTCGTCTGCATACTCAGGCTGAATCTGGTGCTTACTT
ACGGGATTCCTCCCGAGTTTCGCGGCGGCGTCCATTAATTTATTTAAACC
GCCATATGCCCTCGGGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCTT
ACCGATGGCGTTCACTCCCGAGAGTACGCCGGCACAGGGCCAGTAAACCT
CAAGGTAGTTCCGAACGAGTGCTGCCTTGGCAGGTCACCATGGACCAATT
AATATACGCCTCTCTTTCCCACACCCACTATTGGTATGAAGTGGGCATGT
TGAAAGTACCGGCGGTATGTGGGTATGTGGATATTCCTGTATTTCTCTCT
CTCTCTCTCCATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT
ATGTATGTATGTGTGTATGTGTGTGCGTATGTATATATGTATGTATGTAC
GTATGCATTATGTGGGTATGTATGTATCTGCGTATATATATGTATGTATC
TATAAAAGTATCTATGCATATTCATATACGTATGTATGTATACGCGTGTG
TATGTATATATCTATATATGTATGTGCGTACATGTATATATAGATGTACG
TATGTACCAGTATGTATTTATGAAATTCCACACAACCGCGCAATCCGGCC
CTGTCATCCTAGTCATTCTATGCCACTCGCACGTATGTAGGTGTGTTTTC
TCTTTTGCTTCTGCGCCTATGGTTTCACCTCCGAGCCTTGCACCCGTGAT
CCCACCACCCACCCACCCTGTGTGCCAGGCCATGTCATGCCACGCCACTT
GGCGCTCGCATTGGCCGCATCGCCCCGGCGTCGTTTAGTCATTTAGTCGT
TTAGTCGGATGAAAGTGATGAAAGAACGCGCGTACGGGATGTGTGTCGTC
CTCATTTTAAATACTTGTGACGAGTATGCGTGTGTGTGTTTGTGTGTGTG
TATCTATTAAATTGCACATCAATATAACGGTGCAATCCAGCCCTGTCGTG
GTGATGGTTGTCACGAAAACATGTGTTTCGTGGGTTTTGTGAGGGTTTTG
TATGTCTCTTTGTCCTTGATCTGTAAGGGGTTCGAACGAACGATAACGAG
CAAAATCACTTTCCCTCTTTGCTCGAGATAGTGGCCGATCTTGTTGTCCA
GTAAACATAACATAAAACGGTCGCTCTCGCGTAGTGAAACCTGGCCGTCG
CCAACACGCGACTTGCAACACCCCTCATCCAAGGAAAACTCTACGCGATT
ACCAGTAGGTCTAATCATTTGTTGAGTTAAGTCATTTGTTACCTGGTATG
TTTTGTTTTGTCTGCTTTTCATTCTTTTTTTAGGTATGTTCGTATGGGGG
GGGGGGGGGAGAAGGGAGAAGGGAGGGAGAAGGGAGGCTTATTTGTTTGT
TTATTAGCCTCAAGCTCAGACAGAGCAACTGTTTGATCCTTGTTTTTCTA
TGCGATCTCACTCTCTCCTGCGTGTTCCGACTTTTCCTCTCCTCTCATAT
TCCGTCCTGTCCTGACCTGTCCTGTCCTTGCACGACGTCCTATACTCTCC
TATCCTACAATGCCTTTGGACGTGTACGTCAACGCTTGGGAGAAAGCTCT
CCGTGCTGACACGGGTCTCGCAGATTCACGCCGCGTTGGCGTCCATCGTG
GATTCGTGCACCAACCCCGGCGGCGAAGAGCCCAAGGAGAATGGCGTTGG
GCAAGAGGAGTTTCGAGGAGAAGGCAGGCGGTTACAGGCCTGGGACGGGC
AGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig10:290990..293092-

>mRNA_F-serratus_M_contig10.61.1 ID=mRNA_F-serratus_M_contig10.61.1|Name=mRNA_F-serratus_M_contig10.61.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig10:290990..293092- (Fucus serratus male)
CGAAGATGCGAACGGCGACCAGGCGAGGGCCTCGGCGGCAGCGGACGGGC
AAAAGATGCCGAAGCTGAAAGCGCTGGACGGGGAGGCGTTCTCCTCGTGC
TTGGAGATGTGCTTCGAGCACATGCGAAGATGCGAACGGCGACCAGGCGA
GGGCCTCGGCGGCAGCGGACGGGCAAAAGATGCCGAAGCTGAAAGCGCTG
GACGGGGAGGCGTTCTCCTCGTGCTTGGAGATGTGCTTCGAGCACATGCT
CTCCGTGCTGACACGGGTCTCGCAGATTCACGCCGCGTTGGCGTCCATCG
TGGATTCGTGCACCAACCCCGGCGGCGAAGAGCCCAAGGAGAATGGCGTT
GGGCAAGAGGAGTTTCGAGGAGAAGGCAGGCGGTTACAGGCCTGGGACGG
GCACTCTCCGTGCTGACACGGGTCTCGCAGATTCACGCCGCGTTGGCGTC
CATCGTGGATTCGTGCACCAACCCCGGCGGCGAAGAGCCCAAGGAGAATG
GCGTTGGGCAAGAGGAGTTTCGAGGAGAAGGCAGGCGGTTACAGGCCTGG
GACGGGCA
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