mRNA_F-serratus_M_contig10.57.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig10.57.1 vs. uniprot
Match: A0A8J4AU67_9CHLO (Chalcone-flavonone isomerase family protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AU67_9CHLO) HSP 1 Score: 58.5 bits (140), Expect = 6.070e-6 Identity = 59/213 (27.70%), Postives = 89/213 (41.78%), Query Frame = 2 Query: 473 IVDAATGLSLPRTKRFSKSEL-ACLGVGVRAKSIAIAKVNVYTVGLYVEPKGARRAL--RKYAGSDPASLRKDASVFKILGAAGFNKYLHLVFARKVGAKKVVEALTTV----QGVSKDV--LDRFSGIILDAVGGSINKGEAISLGWEGQKMVVLV-----------RDRPAGTVVDAALPEAVFALYLGDSPVSPEAKAAFAEGLPAFLAS 1051 + DA +G+ ++F + E CLG G R+K I V VY+V YVE A + L R+ G D + FNK L L R V ++ EA+ ++ D LD+F+ N E + L + VLV ++P + AL +F ++LG SPV P+A+A + +G A L S Sbjct: 45 VKDAQSGVEFLLAQKFWQGEAYRCLGAGTRSKQIVFVNVKVYSVAAYVEADRAAKELGVRERGGF----FESDDDYCSAILDGAFNKVLTLHLVRDVTGEQFTEAINKSLLPRMQLAGDTASLDQFNAYFNSK--NLANNTEVLLLWSMAGDLEVLVTPPISSPQEYSEEKPEMRINSPALGRGLFEIFLGSSPVVPDARAEWVKGAKALLES 251
BLAST of mRNA_F-serratus_M_contig10.57.1 vs. uniprot
Match: A8J6A8_CHLRE (Chalcone-flavonone isomerase family protein (Fragment) n=4 Tax=Chlamydomonas TaxID=3052 RepID=A8J6A8_CHLRE) HSP 1 Score: 57.8 bits (138), Expect = 1.060e-5 Identity = 60/214 (28.04%), Postives = 87/214 (40.65%), Query Frame = 2 Query: 473 IVDAATGLSLPRTKRFSKSEL-ACLGVGVRAKSIAIAKVNVYTVGLYVEPKGARRAL--RKYAGSDPASLRKDASVFKILGAAGFNKYLHLVFARKVGAKKVVEALTTVQGVSKDVLDRFS-GIILDAVG------GSINKGEAISLGWEGQKMVVLVRD-----------RPAGTVVDAALPEAVFALYLGDSPVSPEAKAAFAEGLPAFLAS 1051 + DA +G+ ++F + E CLG R+K+I V VY++ YVE A + L R+ G D L FNK + L R V ++ EA+ +K +L R LD +N E I + + VLV P + AAL +F ++LGDSPV PEAK + +G L S Sbjct: 45 VKDAQSGVEYLLAQKFWQGEAYRCLGAATRSKNILFVNVKVYSITAYVEADRAAKELGVRQRGGF----FESDNDYASALVDGAFNKVIQLHLVRDVTGEQFTEAI------NKSLLPRMQLAASLDKFNDYFNSKNLVNNTEVILMWSVAGDLEVLVTPPVTAPQEYGTATPELRISSAALGRGLFEIFLGDSPVVPEAKTEWIKGAKQLLDS 248
BLAST of mRNA_F-serratus_M_contig10.57.1 vs. uniprot
Match: A0A7S0D1B6_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D1B6_MICPS) HSP 1 Score: 58.2 bits (139), Expect = 1.160e-5 Identity = 61/231 (26.41%), Postives = 88/231 (38.10%), Query Frame = 2 Query: 473 IVDAATGLSLPRT--KRFSKSELACLGVGVRAKSIAIAKVNVYTVGLYVEPKGARRALRKYAGSDPASLRKDASVFKILGAAGFNKYLHLVFARKVGAKKVVEAL-----------TTVQGVSKDVLDRFSGIILDAV-------------------GGSINKGEAISLGW-------------EGQKMVVLVRDRPAGTVVDAALPEAVFALYLGDSPVSPEAKAAFAEG 1030 +V+ AT ++ P T + + + CLG GVR K IAI V VY V +Y + AL GS L F+K L + R V K EAL T ++D F + +A G ++ K + + W EG+ + +V + L A+F +YLGD+PVSP+AKAAF G Sbjct: 84 VVEPATKVTFPDTYSTHDNTAVMKCLGAGVRQKKIAIINVKVYAVAMYADAVQCASALE--GGSS-------------LLDGKFHKALLVQLVRNVDGKTFWEALDEALVPRIREIATNMATAEDAQGNFMATVAEAAEVAEERAMAAMDELRDLFGGANLKKDSRVLINWKPGNDSDKTVTGFEGKLEIGVVGADATVELTSMELARALFDVYLGDAPVSPDAKAAFEAG 299
BLAST of mRNA_F-serratus_M_contig10.57.1 vs. uniprot
Match: D8TNV3_VOLCA (Chalcone-flavonone isomerase family protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TNV3_VOLCA) HSP 1 Score: 57.0 bits (136), Expect = 1.950e-5 Identity = 57/213 (26.76%), Postives = 85/213 (39.91%), Query Frame = 2 Query: 473 IVDAATGLSLPRTKRFSKSEL-ACLGVGVRAKSIAIAKVNVYTVGLYVEPKGARRAL--RKYAGSDPASLRKDASVFKILGAAGFNKYLHLVFARKVGAKKVVEALTTVQGVSKDV------LDRFSGIILDAVGGSINKGEAISLGWEGQKMVVLV-----------RDRPAGTVVDAALPEAVFALYLGDSPVSPEAKAAFAEGLPAFLAS 1051 + DA +G+ ++F + E CLG R+K I V VY+V YVE A + L R+ G D + FNK L L R V ++ EA+ + LD+F+ +N E + L + VLV + P + AL +F ++LG SPV PEA+A + +G L S Sbjct: 44 VKDAQSGVEFLLAQKFWQGEAYRCLGAATRSKQIVFVNVKVYSVAAYVEADRAAKELGIRERGGF----FETDDDYCSAILDGAFNKVLALHLVRDVTGEQFTEAINKSLAPRMQLAGDTASLDKFNAFFSSK--NLVNNTEVLLLWSMAGDLEVLVTPPVTAPQEYGQATPELRISSPALSRGLFEIFLGSSPVVPEARAEWVKGAKTLLES 250
BLAST of mRNA_F-serratus_M_contig10.57.1 vs. uniprot
Match: A0A8J4BVR9_9CHLO (Chalcone-flavonone isomerase family protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BVR9_9CHLO) HSP 1 Score: 55.1 bits (131), Expect = 8.650e-5 Identity = 58/213 (27.23%), Postives = 87/213 (40.85%), Query Frame = 2 Query: 473 IVDAATGLSLPRTKRFSKSEL-ACLGVGVRAKSIAIAKVNVYTVGLYVEPKGARRAL--RKYAGSDPASLRKDASVFKILGAAGFNKYLHLVFARKVGAKKVVEALTTV----QGVSKDV--LDRFSGIILDAVGGSINKGEAISLGWEGQKMVVLVRD-----------RPAGTVVDAALPEAVFALYLGDSPVSPEAKAAFAEGLPAFLAS 1051 + D +G+ ++F + E CLG G R+K I V VY+V YVE A + L R+ G D + FNK L L R V ++ EA+ ++ D LD+F+ N E + L + VLV +P + AL +F ++LG SPV P+A+ +A+G A L S Sbjct: 46 VKDPQSGVEFLLAQKFWQGEAYRCLGAGTRSKQIVFVNVKVYSVAAYVEADRAAKELGIRERGGF----FETDDDYCSAILDGAFNKVLALHLVRDVTGEQFTEAINKSLLPRMQLAGDTASLDQFNAYFNSK--NLANNSEVLLLWSVAGDLEVLVTPPTTFPHEYGEAKPELRINSPALGRGLFEIFLGSSPVVPDARTEWAKGAKALLES 252 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig10.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig10.57.1 >prot_F-serratus_M_contig10.57.1 ID=prot_F-serratus_M_contig10.57.1|Name=mRNA_F-serratus_M_contig10.57.1|organism=Fucus serratus male|type=polypeptide|length=272bp MPSRKAGSLGVAVVFALVAVFLFFARDEHGSWRIGSLRLSPLAADEKYGPback to top mRNA from alignment at F-serratus_M_contig10:235076..237652- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig10.57.1 ID=mRNA_F-serratus_M_contig10.57.1|Name=mRNA_F-serratus_M_contig10.57.1|organism=Fucus serratus male|type=mRNA|length=2577bp|location=Sequence derived from alignment at F-serratus_M_contig10:235076..237652- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig10:235076..237652- >mRNA_F-serratus_M_contig10.57.1 ID=mRNA_F-serratus_M_contig10.57.1|Name=mRNA_F-serratus_M_contig10.57.1|organism=Fucus serratus male|type=CDS|length=1632bp|location=Sequence derived from alignment at F-serratus_M_contig10:235076..237652- (Fucus serratus male)back to top |