mRNA_F-serratus_M_contig1.4.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1.4.1
Unique NamemRNA_F-serratus_M_contig1.4.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1.4.1 vs. uniprot
Match: D7G261_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G261_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.350e-12
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 2 
Query:  125 DVPEVWPFTGINERNTYNLNFVNSTTKDPLVLKNSLDTVITNNEFIGPGVLSFIGTNETRLSGNTGSPAESSPKVENSCFTPTSGVVPVC 394
            DV +V P+TGINERN  + N V  T   P+ + +S +T +++N F+G G  SF  ++ETRL  N G  A+S+P VE+SCFT  SGV P C
Sbjct:  622 DVADVEPYTGINERNFLSENNVMGTANFPVSVADSSETTLSDNFFLGSGAFSFTRSDETRLWNNEGGAADSTPYVEDSCFTADSGVSPEC 711
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G261_ECTSI1.350e-1247.78Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1contigF-serratus_M_contig1:76751..79313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMannuronan C-5-epimerase 4
Ec32 orthologEc-20_004700.2
Exons4
Model size1322
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1.4.1prot_F-serratus_M_contig1.4.1Fucus serratus malepolypeptideF-serratus_M_contig1 77676..79309 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928772.9356751-UTR-F-serratus_M_contig1:76750..776751622928772.9356751-UTR-F-serratus_M_contig1:76750..77675Fucus serratus maleUTRF-serratus_M_contig1 76751..77675 -
1690962561.5738683-UTR-F-serratus_M_contig1:76750..776751690962561.5738683-UTR-F-serratus_M_contig1:76750..77675Fucus serratus maleUTRF-serratus_M_contig1 76751..77675 -
1622928773.0176942-UTR-F-serratus_M_contig1:79309..793131622928773.0176942-UTR-F-serratus_M_contig1:79309..79313Fucus serratus maleUTRF-serratus_M_contig1 79310..79313 -
1690962561.6872554-UTR-F-serratus_M_contig1:79309..793131690962561.6872554-UTR-F-serratus_M_contig1:79309..79313Fucus serratus maleUTRF-serratus_M_contig1 79310..79313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928772.9619286-CDS-F-serratus_M_contig1:77675..777931622928772.9619286-CDS-F-serratus_M_contig1:77675..77793Fucus serratus maleCDSF-serratus_M_contig1 77676..77793 -
1690962561.5976815-CDS-F-serratus_M_contig1:77675..777931690962561.5976815-CDS-F-serratus_M_contig1:77675..77793Fucus serratus maleCDSF-serratus_M_contig1 77676..77793 -
1622928772.9760716-CDS-F-serratus_M_contig1:78144..782461622928772.9760716-CDS-F-serratus_M_contig1:78144..78246Fucus serratus maleCDSF-serratus_M_contig1 78145..78246 -
1690962561.6147053-CDS-F-serratus_M_contig1:78144..782461690962561.6147053-CDS-F-serratus_M_contig1:78144..78246Fucus serratus maleCDSF-serratus_M_contig1 78145..78246 -
1622928772.9927626-CDS-F-serratus_M_contig1:78547..786661622928772.9927626-CDS-F-serratus_M_contig1:78547..78666Fucus serratus maleCDSF-serratus_M_contig1 78548..78666 -
1690962561.6447465-CDS-F-serratus_M_contig1:78547..786661690962561.6447465-CDS-F-serratus_M_contig1:78547..78666Fucus serratus maleCDSF-serratus_M_contig1 78548..78666 -
1622928773.006815-CDS-F-serratus_M_contig1:79255..793091622928773.006815-CDS-F-serratus_M_contig1:79255..79309Fucus serratus maleCDSF-serratus_M_contig1 79256..79309 -
1690962561.662758-CDS-F-serratus_M_contig1:79255..793091690962561.662758-CDS-F-serratus_M_contig1:79255..79309Fucus serratus maleCDSF-serratus_M_contig1 79256..79309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1.4.1

>prot_F-serratus_M_contig1.4.1 ID=prot_F-serratus_M_contig1.4.1|Name=mRNA_F-serratus_M_contig1.4.1|organism=Fucus serratus male|type=polypeptide|length=131bp
MHGNKWGIRSLAGANDNTIEDNVFANNTMNDIMQYLGSDLDVPEVWPFTG
INERNTYNLNFVNSTTKDPLVLKNSLDTVITNNEFIGPGVLSFIGTNETR
LSGNTGSPAESSPKVENSCFTPTSGVVPVC*
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mRNA from alignment at F-serratus_M_contig1:76751..79313-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1.4.1 ID=mRNA_F-serratus_M_contig1.4.1|Name=mRNA_F-serratus_M_contig1.4.1|organism=Fucus serratus male|type=mRNA|length=2563bp|location=Sequence derived from alignment at F-serratus_M_contig1:76751..79313- (Fucus serratus male)
CGAAATGCACGGGAACAAGTGGGGGATCCGCTCGCTGGCGGGGGCGAACG
ATAATACGGCAAGATGGGAAAAAAATAATACGTACAGTAGTACCATTAAT
ATATTCGCGTAATTATTGGCATTAATAGTATGAAACGATTCTTTTGTCAA
AAGATGTGTAGATTTCGTCCCCTGCGTTGAAAACGATATATATACTCGGC
AAGAGCTGGGATACCTGTACACACCATTATCCAGACTTTCGGAAGTTTCA
TGTGTGAGTTCCGGTTTGCTACGAGTAGGGTTTCGAGATAATTACGAGGG
CGGGGATGGGGGGGGGTCTTTCCCGGAGTGGGTTAAGCATACTGTTCCCT
GTATCACACCCCGGAGGGTGCGTGGTGGGCTGCATATACTACGTACGGGG
CCACCTAGGGGATACCCTCGGAGACTCGAAGTATATTGGGTAGGCGACAC
CCAAGCGTTGAGCTCTGTGGGAGCCTCTTGAGTAACACGGCTCTGCGTCC
CTATCCCGTCGTTCAAGTACGTTCTCAGAGAAGGAAGGCCAAATTTGCTT
TTTTGTTGCTTCCGCTTACGGTTTGTTTATTATTCCACCTTCCCCCCTTT
GTCGTACTTGTGTATTTTCACGTCCAACGTCCAACTTGCGTCAAAAGATT
GAGGACAACGTCTTCGCGAACAACACCATGAACGATATCATGCAGTATCT
CGGCTCCGACCTCGATGTCCCGGAAGTCTGGCCGTTCACGGGCATCAACG
AGAGGAATACATACAAGTCAGTTGGTAAAATTTGCCTCAGGGTCTCTTAG
TACCAACCAGGCGTTTTTCTTGTGTTCCTTCAAACTCTCTTTTTATCATG
GCATACACCACGCGCCCGCTTTTCCGCGGGCGCGTTAGAAAATCTCTTGT
GTTAAATGTCGTATTATCAAATAGTATTTTTGGATGTCGTCACTGGGTGG
CGTCCCGGCTTTCTTGCTGTTGCACGTAGTGGGTACTGTATCACGAAGCA
CAGCGTCGCTCTCACACCCTATCCCTCCTGTCTGTTTCTTCTACCGCCAT
AACCGTTTCGCTGGCAGCCTGAACTTTGTTAATTCGACAACTAAGGACCC
GTTGGTCCTTAAGAACTCCCTGGATACCGTCATCACCAACAACGAGTTCA
TCGGCCCCGGGGTCCTCTCGTGAGAACTGCCCCCCCCCCCCCCTCCACCG
TCTCACAGCCGCCTCAGTACGGAACTTCGGGATACGTTTTTTTTTTGTCA
CGGCCCTTTCGGCGCAGTGATCGCAAAGGAAGTGTCGTGGCCCCGAGATC
CGAGATGGCCGCAAACCTCTTCTTTTGTGGTGAATCTATTTTGTCATGAG
GTTATGGCAAGGCGTTCCTCCGCGGATTCACTAGCTGTTTCTAACCATGA
CGATGTCTGATCCAGTCGACCGGGGAGACGCAAATGCCTGACCCGGTGCT
TGTTTTTTCTCTTGCGGTGTTTCGCAAAACACCTTATGGTTGACTGAAAC
CCACGTGCATGTCTCAATAGGTTTATCGGGACCAACGAAACTCGTCTTTC
GGGGAACACGGGATCTCCCGCGGAATCCTCGCCGAAGGTGGAAAATTCCT
GCTTCACTCCGACATCCGGCGTCGTCCCAGTATGCTGAACGCGAGGGTGA
GACGGCCGCCGCGTCCAGGAGCCTGGGCAAATCGATGACATCTGTTCGTG
TGGTGAATACGAAACTCTATTCGCTCTCTAGTCGTGATAATATTTTAGAT
GATCGGCGCGACCTTGGGCGCTTAATCAGTGGAGACGCGATGCGATCAGG
ATGCCTTAGCGCACTCGGTAGGTTTGCGTGGCTTTCCTCTCCGCCCCTTT
CTGCGGGGAGGAAATAGACAGGGAAGCCGCGAGGAAACGGCTGTGTAACG
GTAAAACTCCATTCCGACCTTTTTTTGATTCGCGGTGCCTTTGGTGACAA
GCTGAATGTGTGTGTACCAATATACATTGATTTCAGCCAGTCGATGTGTT
AACATTGTTTTGGGCGTTCAGAGTATATACTCTTGCTGTCGTTTCATGGT
TTGTTTTGTCCTGTGCACGCGCTTGATAGTCCTCGGTGGGAATATGTGCC
CGCTTTTTGGACTGGTTTGTCAATTTTGTCGCGAGATTGAGCGTGTGTGG
TCTCGGTGTTAAAAATAATATGTGTATCATAGGAGTGCGCGTTAAGCTGG
TGATTTTGCGTAGTACCAGTAGATATTTCCCGCTATATATTCCCCGCTCA
AGCCCTGCTGGGACGACCCTATCGCCGGAGGCGCTGTTTTGTACATGTCT
TGGGGACGCTGGGGGTGACAACGAGTTGTTGTGCGCGCGACCGGACTCGT
TAGGAGCCTTCTTCGATTTGCTTTCCATTTTCACCCACTGAACCGAAAGG
GGGGCTCGGTTCACCCAGAAACTATTTTGACTTGTTAGTTTCCTGTTCTG
CGGTTTTCCATTACATTTTAGCTTTCTCCCAACGCGTGTTTTGAGATACG
AGGCATGAGAGGCACGACCTCTCCAACTTAGCCTTGTTTTAATAAGTCAC
GATCGAACGCTTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1:76751..79313-

>mRNA_F-serratus_M_contig1.4.1 ID=mRNA_F-serratus_M_contig1.4.1|Name=mRNA_F-serratus_M_contig1.4.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig1:76751..79313- (Fucus serratus male)
ATGCACGGGAACAAGTGGGGGATCCGCTCGCTGGCGGGGGCGAACGATAA
TACGATGCACGGGAACAAGTGGGGGATCCGCTCGCTGGCGGGGGCGAACG
ATAATACGATTGAGGACAACGTCTTCGCGAACAACACCATGAACGATATC
ATGCAGTATCTCGGCTCCGACCTCGATGTCCCGGAAGTCTGGCCGTTCAC
GGGCATCAACGAGAGGAATACATACAAATTGAGGACAACGTCTTCGCGAA
CAACACCATGAACGATATCATGCAGTATCTCGGCTCCGACCTCGATGTCC
CGGAAGTCTGGCCGTTCACGGGCATCAACGAGAGGAATACATACAACCTG
AACTTTGTTAATTCGACAACTAAGGACCCGTTGGTCCTTAAGAACTCCCT
GGATACCGTCATCACCAACAACGAGTTCATCGGCCCCGGGGTCCTCTCCC
TGAACTTTGTTAATTCGACAACTAAGGACCCGTTGGTCCTTAAGAACTCC
CTGGATACCGTCATCACCAACAACGAGTTCATCGGCCCCGGGGTCCTCTC
GTTTATCGGGACCAACGAAACTCGTCTTTCGGGGAACACGGGATCTCCCG
CGGAATCCTCGCCGAAGGTGGAAAATTCCTGCTTCACTCCGACATCCGGC
GTCGTCCCAGTATGCTGAGTTTATCGGGACCAACGAAACTCGTCTTTCGG
GGAACACGGGATCTCCCGCGGAATCCTCGCCGAAGGTGGAAAATTCCTGC
TTCACTCCGACATCCGGCGTCGTCCCAGTATGCTGA
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