mRNA_F-serratus_M_contig1.39.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1.39.1
Unique NamemRNA_F-serratus_M_contig1.39.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1.39.1 vs. uniprot
Match: D7FPM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPM0_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 8.970e-40
Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:  100 RDRKKVKHIKHDGNVTLDQVIGIARTMRERSMARTLTGTMKEMLGPCNSVGCTVNGQSPRDIQSGIAEGEIIIPDE 327
            RDRKKVK+IKHDGNVTLDQVI IAR MRERSMARTL GT+KEMLG CNSVGCTVNGQSPRDIQSGI+EGEI+IPDE
Sbjct:   90 RDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 165
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BLAST of mRNA_F-serratus_M_contig1.39.1 vs. uniprot
Match: A0A7S2XYN5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYN5_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.490e-33
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:   97 PRDRKKVKHIKHDGNVTLDQVIGIARTMRERSMARTLTGTMKEMLGPCNSVGCTVNGQSPRDIQSGIAEGEIIIPD 324
            PRDRKKVK+IKHDGN+TLDQVI +ARTMR RSMAR L+GT+KEMLG   S+GCTVNGQSPRDIQ  I+EGEI+IPD
Sbjct:  127 PRDRKKVKNIKHDGNLTLDQVIDVARTMRSRSMARHLSGTVKEMLGTAFSLGCTVNGQSPRDIQKAISEGEIVIPD 202
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BLAST of mRNA_F-serratus_M_contig1.39.1 vs. uniprot
Match: A0A7S2UAZ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAZ7_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.890e-33
Identity = 55/76 (72.37%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:  100 RDRKKVKHIKHDGNVTLDQVIGIARTMRERSMARTLTGTMKEMLGPCNSVGCTVNGQSPRDIQSGIAEGEIIIPDE 327
            RDRKKVK++ H+GN+TL+QVI IA+ MRERSMAR L+GT+KE+LG CNS+GCTVNG+SPRDIQ+GI +GE++IPDE
Sbjct:   89 RDRKKVKNVVHNGNITLEQVIDIAKVMRERSMARKLSGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEVVIPDE 164
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BLAST of mRNA_F-serratus_M_contig1.39.1 vs. uniprot
Match: A0A7S0FUE0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FUE0_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.080e-33
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:  100 RDRKKVKHIKHDGNVTLDQVIGIARTMRERSMARTLTGTMKEMLGPCNSVGCTVNGQSPRDIQSGIAEGEIIIPDE 327
            RDRKK K+I H+GN+TLDQVI IAR+MRERSMAR L GT+KE+LG CNS+GCTVNG+SPRDIQ+GI +GEI IPDE
Sbjct:   29 RDRKKEKNIVHNGNLTLDQVIEIARSMRERSMARLLAGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEIEIPDE 104
[Close]
BLAST of mRNA_F-serratus_M_contig1.39.1 vs. uniprot
Match: A0A835YTI9_9STRA (Ribosomal protein L11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTI9_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.990e-32
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:  100 RDRKKVKHIKHDGNVTLDQVIGIARTMRERSMARTLTGTMKEMLGPCNSVGCTVNGQSPRDIQSGIAEGEIIIPD 324
            RDRKKVKH+KHDGNVTLDQ+I +AR MR RSMARTL GT+KE+LG   SVGCTVNG +PRD+Q  I +GEI+IPD
Sbjct:   91 RDRKKVKHVKHDGNVTLDQIIDVARVMRARSMARTLAGTVKEVLGTAFSVGCTVNGMAPRDVQKAITDGEIVIPD 165
[Close]
BLAST of mRNA_F-serratus_M_contig1.39.1 vs. uniprot
Match: K0TFA0_THAOC (Uncharacterized protein n=3 Tax=Eukaryota TaxID=2759 RepID=K0TFA0_THAOC)

HSP 1 Score: 118 bits (295), Expect = 1.340e-31
Identity = 55/76 (72.37%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:  100 RDRKKVKHIKHDGNVTLDQVIGIARTMRERSMARTLTGTMKEMLGPCNSVGCTVNGQSPRDIQSGIAEGEIIIPDE 327
            RDRKKVK+I H+GN+TLDQVI IA+ MRERSMA+ L+GT+KE+LG CNS+GCTVNG+SPRDIQ+GI +GE+ IP+E
Sbjct:   89 RDRKKVKNIVHNGNLTLDQVIDIAKQMRERSMAKKLSGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEVEIPEE 164
[Close]
BLAST of mRNA_F-serratus_M_contig1.39.1 vs. uniprot
Match: A0A7S3PV60_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV60_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.820e-31
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:  100 RDRKKVKHIKHDGNVTLDQVIGIARTMRERSMARTLTGTMKEMLGPCNSVGCTVNGQSPRDIQSGIAEGEIIIPDE 327
            RDRKKVK++ HDGN+TLDQVI IAR MR+RS A+ L+GT+KEMLG CNS+GCTVNG SPRD+Q+GI +GEI IP E
Sbjct:   89 RDRKKVKNVTHDGNLTLDQVIEIARAMRDRSCAKELSGTVKEMLGTCNSIGCTVNGDSPRDVQAGIDDGEIEIPAE 164
[Close]
BLAST of mRNA_F-serratus_M_contig1.39.1 vs. uniprot
Match: A0A7S2LV58_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LV58_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.410e-31
Identity = 56/76 (73.68%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:  100 RDRKKVKHIKHDGNVTLDQVIGIARTMRERSMARTLTGTMKEMLGPCNSVGCTVNGQSPRDIQSGIAEGEIIIPDE 327
            RDRKKVK++ H+GN+TLD +I IARTMRERSMARTL GT+KE+LG   S+GCTVNG+SPRDIQSGI +GEI IP+E
Sbjct:   89 RDRKKVKNVVHNGNITLDAIIEIARTMRERSMARTLAGTVKEILGTAFSIGCTVNGESPRDIQSGIDDGEIEIPEE 164
[Close]
BLAST of mRNA_F-serratus_M_contig1.39.1 vs. uniprot
Match: B8BTS3_THAPS (RL12, ribosomal protein 11 60S large ribosomal subunit n=10 Tax=Ochrophyta TaxID=2696291 RepID=B8BTS3_THAPS)

HSP 1 Score: 115 bits (289), Expect = 1.090e-30
Identity = 54/76 (71.05%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:  100 RDRKKVKHIKHDGNVTLDQVIGIARTMRERSMARTLTGTMKEMLGPCNSVGCTVNGQSPRDIQSGIAEGEIIIPDE 327
            RDRKKVK++ H+GN+TLDQVI IAR MRERSMA+ L GT+KE+LG  NS+GCTVNG+SPRDIQ+GI +GE+ IP+E
Sbjct:   89 RDRKKVKNVVHNGNITLDQVIDIARQMRERSMAKKLAGTVKEILGTANSIGCTVNGESPRDIQAGIDDGEVEIPEE 164
[Close]
BLAST of mRNA_F-serratus_M_contig1.39.1 vs. uniprot
Match: A0A7S1BVM0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVM0_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.620e-30
Identity = 53/76 (69.74%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:  100 RDRKKVKHIKHDGNVTLDQVIGIARTMRERSMARTLTGTMKEMLGPCNSVGCTVNGQSPRDIQSGIAEGEIIIPDE 327
            RDRKK K+I H+GN+TLDQVI IAR MRERSMA+ L+GT+KE+LG  NS+GCTVNG++PRD+QS I +GE+ IPDE
Sbjct:   18 RDRKKEKNIVHNGNITLDQVIDIARQMRERSMAKELSGTVKEILGTANSIGCTVNGENPRDVQSAIDDGEVEIPDE 93
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPM0_ECTSI8.970e-4089.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XYN5_9STRA1.490e-3378.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UAZ7_9STRA2.890e-3372.37Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0FUE0_9STRA4.080e-3376.32Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A835YTI9_9STRA4.990e-3273.33Ribosomal protein L11 n=1 Tax=Tribonema minus TaxI... [more]
K0TFA0_THAOC1.340e-3172.37Uncharacterized protein n=3 Tax=Eukaryota TaxID=27... [more]
A0A7S3PV60_9STRA3.820e-3172.37Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2LV58_9STRA5.410e-3173.68Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8BTS3_THAPS1.090e-3071.05RL12, ribosomal protein 11 60S large ribosomal sub... [more]
A0A7S1BVM0_9STRA1.620e-3069.74Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1contigF-serratus_M_contig1:1214873..1215202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue5.8e-31
Seed eggNOG ortholog2880.D7FPM0
Preferred namerpl12
KEGG koko:K02870
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000381,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0015934,GO:0016043,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031323,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043484,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903311,GO:1990904
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsCOG0080@1,KOG0886@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size332
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928779.569036-CDS-F-serratus_M_contig1:1214872..12152021622928779.569036-CDS-F-serratus_M_contig1:1214872..1215202Fucus serratus maleCDSF-serratus_M_contig1 1214873..1215202 -
1690962566.6075342-CDS-F-serratus_M_contig1:1214872..12152021690962566.6075342-CDS-F-serratus_M_contig1:1214872..1215202Fucus serratus maleCDSF-serratus_M_contig1 1214873..1215202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1.39.1prot_F-serratus_M_contig1.39.1Fucus serratus malepolypeptideF-serratus_M_contig1 1214873..1215202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1.39.1

>prot_F-serratus_M_contig1.39.1 ID=prot_F-serratus_M_contig1.39.1|Name=mRNA_F-serratus_M_contig1.39.1|organism=Fucus serratus male|type=polypeptide|length=110bp
PDHRQSHHYQPPGHRGSRPHGVVASPQGAQRAPRDRKKVKHIKHDGNVTL
DQVIGIARTMRERSMARTLTGTMKEMLGPCNSVGCTVNGQSPRDIQSGIA
EGEIIIPDE*
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mRNA from alignment at F-serratus_M_contig1:1214873..1215202-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1.39.1 ID=mRNA_F-serratus_M_contig1.39.1|Name=mRNA_F-serratus_M_contig1.39.1|organism=Fucus serratus male|type=mRNA|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig1:1214873..1215202- (Fucus serratus male)
CCCGATCACCGTCAATCTCACCATTATCAACCGCCAGGCCACCGTGGCAG
TCGTCCCCACGGCGTCGTCGCTTCTCCTCAAGGCGCTCAACGAGCCCCGC
GGGACCGAAAAAAGGTGAAGCACATCAAGCACGACGGCAACGTCACCCTC
GACCAAGTGATCGGTATCGCCCGCACGATGCGCGAACGCTCCATGGCGCG
TACGCTCACCGGAACTATGAAAGAGATGCTAGGTCCTTGTAACTCTGTTG
GCTGCACAGTGAACGGGCAATCTCCCCGCGACATCCAGAGCGGAATCGCA
GAGGGCGAAATCATCATTCCGGATGAGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1:1214873..1215202-

>mRNA_F-serratus_M_contig1.39.1 ID=mRNA_F-serratus_M_contig1.39.1|Name=mRNA_F-serratus_M_contig1.39.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig1:1214873..1215202- (Fucus serratus male)
CCCGATCACCGTCAATCTCACCATTATCAACCGCCAGGCCACCGTGGCAG
TCGTCCCCACGGCGTCGTCGCTTCTCCTCAAGGCGCTCAACGAGCCCCGC
GGGACCGAAAAAAGGTGAAGCACATCAAGCACGACGGCAACGTCACCCTC
GACCAAGTGATCGGTATCGCCCGCACGATGCGCGAACGCTCCATGGCGCG
TACGCTCACCGGAACTATGAAAGAGATGCTAGGTCCTTGTAACTCTGTTG
GCTGCACAGTGAACGGGCAATCTCCCCGCGACATCCAGAGCGGAATCGCA
GAGGGCGAAATCATCATTCCGGATGAGTAGCCCGATCACCGTCAATCTCA
CCATTATCAACCGCCAGGCCACCGTGGCAGTCGTCCCCACGGCGTCGTCG
CTTCTCCTCAAGGCGCTCAACGAGCCCCGCGGGACCGAAAAAAGGTGAAG
CACATCAAGCACGACGGCAACGTCACCCTCGACCAAGTGATCGGTATCGC
CCGCACGATGCGCGAACGCTCCATGGCGCGTACGCTCACCGGAACTATGA
AAGAGATGCTAGGTCCTTGTAACTCTGTTGGCTGCACAGTGAACGGGCAA
TCTCCCCGCGACATCCAGAGCGGAATCGCAGAGGGCGAAATCATCATTCC
GGATGAGTAG
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