mRNA_F-serratus_M_contig1.2.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1.2.1
Unique NamemRNA_F-serratus_M_contig1.2.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1contigF-serratus_M_contig1:28298..29586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size751
Cds size750
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928769.5041075-CDS-F-serratus_M_contig1:28297..285731622928769.5041075-CDS-F-serratus_M_contig1:28297..28573Fucus serratus maleCDSF-serratus_M_contig1 28298..28573 -
1690962555.0655134-CDS-F-serratus_M_contig1:28297..285731690962555.0655134-CDS-F-serratus_M_contig1:28297..28573Fucus serratus maleCDSF-serratus_M_contig1 28298..28573 -
1622928769.9132385-CDS-F-serratus_M_contig1:29112..295861622928769.9132385-CDS-F-serratus_M_contig1:29112..29586Fucus serratus maleCDSF-serratus_M_contig1 29113..29586 -
1690962558.1515274-CDS-F-serratus_M_contig1:29112..295861690962558.1515274-CDS-F-serratus_M_contig1:29112..29586Fucus serratus maleCDSF-serratus_M_contig1 29113..29586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1.2.1prot_F-serratus_M_contig1.2.1Fucus serratus malepolypeptideF-serratus_M_contig1 28298..29586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1.2.1

>prot_F-serratus_M_contig1.2.1 ID=prot_F-serratus_M_contig1.2.1|Name=mRNA_F-serratus_M_contig1.2.1|organism=Fucus serratus male|type=polypeptide|length=250bp
LAPESQRQLTKPASAVSMNAAALLGINAELGKLRHKRALTTEQFQLLKAR
TKDGTVTEELLGLLNQAWALRCDGTLDEGGYAENIRTVIGEMQPPSRMSS
TAAAPTLASQVQLVPPPALSPAAVRSRADRSRNGALAKAAKGSLNIVNAF
IRGQGGKPMPKTLKNGAVELVQSVTYPKPAPTQKLIQCRYCPAKFENEQR
HTVHRKMLHPRVNAHEGTRLLASMRGGGKVAMWPWEALGLGRCWVARLGT
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mRNA from alignment at F-serratus_M_contig1:28298..29586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1.2.1 ID=mRNA_F-serratus_M_contig1.2.1|Name=mRNA_F-serratus_M_contig1.2.1|organism=Fucus serratus male|type=mRNA|length=1289bp|location=Sequence derived from alignment at F-serratus_M_contig1:28298..29586- (Fucus serratus male)
CTAGCTCCGGAAAGCCAAAGACAGCTCACTAAACCAGCAAGCGCTGTCTC
AATGAATGCTGCAGCCTTGCTCGGCATAAATGCCGAGTTGGGCAAGCTGA
GGCACAAGAGAGCGTTAACCACTGAGCAGTTCCAACTGTTGAAGGCTAGA
ACGAAAGATGGGACAGTCACAGAAGAGTTGTTGGGCTTGCTCAACCAAGC
ATGGGCATTGCGCTGCGATGGTACGCTGGACGAGGGCGGGTACGCTGAGA
ACATCAGGACAGTGATTGGTGAGATGCAACCGCCCAGTCGGATGAGCTCA
ACAGCTGCGGCTCCTACATTGGCCTCGCAAGTGCAATTGGTGCCACCACC
GGCTCTTTCTCCTGCTGCTGTCAGGTCAAGAGCAGATCGGAGTAGAAACG
GCGCGCTCGCGAAGGCTGCCAAGGGCTCGTTGAACATCGTGAACGCCTTC
ATCCGGGGCCAGGGCGGCAAACCTGTGAGTACATACAGTACTACAGCAGA
GTGTTAGCTTATATGGCATGTTGCATCAACTGCTGCCGGGGTCACACATG
AGGAAGGTCAACACAAAGAGTGTTTTTTGTTCACATACTATAGGTACTGT
ATGTAACTGCACACAGCAGTATATGTACTGTAGACGGTACTATACGGAGA
ACAGCTACAGTACTGCTATAGTAGTACAGTCAGTATAATAATTATCTTGC
TGCTCGACCGATGCATGTAAGTGTATGCAGATCAGCTCCTTGCTGTGTGT
TTCTACGGTACTGTTGTACTGCCCAGATTCAACACATGAAATCCTGAAAA
ATATATTTGTTCTGCGTGGTACAGTACAGTACTGTATAGCAGTAGACAAA
TCTGTGATATGCTGTGATACTGTACACGAAAACGTTGTTAAATCAGTGCC
GCACACGTTTTTGCGAACGGCGTGTTTTGGGGTGCTGTGCATTGCTATTC
GAGGGTAAACAGCGCTGACCAAGGACAGTTACATACTCTACGTTCCACTT
TCGTCACGCGCAGATGCCCAAGACGCTGAAGAATGGCGCCGTCGAACTTG
TGCAGAGCGTCACCTACCCGAAACCTGCTCCAACACAGAAGCTGATCCAG
TGCCGGTACTGTCCGGCGAAGTTCGAAAACGAGCAACGTCACACGGTGCA
CCGGAAAATGCTACACCCGCGAGTAAACGCGCACGAAGGGACGAGACTCT
TGGCGAGTATGCGAGGTGGTGGGAAAGTCGCGATGTGGCCGTGGGAAGCA
TTGGGCTTGGGCCGTTGCTGGGTGGCTCGCCTCGGCACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1:28298..29586-

>mRNA_F-serratus_M_contig1.2.1 ID=mRNA_F-serratus_M_contig1.2.1|Name=mRNA_F-serratus_M_contig1.2.1|organism=Fucus serratus male|type=CDS|length=1500bp|location=Sequence derived from alignment at F-serratus_M_contig1:28298..29586- (Fucus serratus male)
CTAGCTCCGGAAAGCCAAAGACAGCTCACTAAACCAGCAAGCGCTGTCTC
AATGAATGCTGCAGCCTTGCTCGGCATAAATGCCGAGTTGGGCAAGCTGA
GGCACAAGAGAGCGTTAACCACTGAGCAGTTCCAACTGTTGAAGGCTAGA
ACGAAAGATGGGACAGTCACAGAAGAGTTGTTGGGCTTGCTCAACCAAGC
ATGGGCATTGCGCTGCGATGGTACGCTGGACGAGGGCGGGTACGCTGAGA
ACATCAGGACAGTGATTGGTGAGATGCAACCGCCCAGTCGGATGAGCTCA
ACAGCTGCGGCTCCTACATTGGCCTCGCAAGTGCAATTGGTGCCACCACC
GGCTCTTTCTCCTGCTGCTGTCAGGTCAAGAGCAGATCGGAGTAGAAACG
GCGCGCTCGCGAAGGCTGCCAAGGGCTCGTTGAACATCGTGAACGCCTTC
ATCCGGGGCCAGGGCGGCAAACCTCTAGCTCCGGAAAGCCAAAGACAGCT
CACTAAACCAGCAAGCGCTGTCTCAATGAATGCTGCAGCCTTGCTCGGCA
TAAATGCCGAGTTGGGCAAGCTGAGGCACAAGAGAGCGTTAACCACTGAG
CAGTTCCAACTGTTGAAGGCTAGAACGAAAGATGGGACAGTCACAGAAGA
GTTGTTGGGCTTGCTCAACCAAGCATGGGCATTGCGCTGCGATGGTACGC
TGGACGAGGGCGGGTACGCTGAGAACATCAGGACAGTGATTGGTGAGATG
CAACCGCCCAGTCGGATGAGCTCAACAGCTGCGGCTCCTACATTGGCCTC
GCAAGTGCAATTGGTGCCACCACCGGCTCTTTCTCCTGCTGCTGTCAGGT
CAAGAGCAGATCGGAGTAGAAACGGCGCGCTCGCGAAGGCTGCCAAGGGC
TCGTTGAACATCGTGAACGCCTTCATCCGGGGCCAGGGCGGCAAACCTAT
GCCCAAGACGCTGAAGAATGGCGCCGTCGAACTTGTGCAGAGCGTCACCT
ACCCGAAACCTGCTCCAACACAGAAGCTGATCCAGTGCCGGTACTGTCCG
GCGAAGTTCGAAAACGAGCAACGTCACACGGTGCACCGGAAAATGCTACA
CCCGCGAGTAAACGCGCACGAAGGGACGAGACTCTTGGCGAGTATGCGAG
GTGGTGGGAAAGTCGCGATGTGGCCGTGGGAAGCATTGGGCTTGGGCCGT
TGCTGGGTGGCTCGCCTCGGCACGATGCCCAAGACGCTGAAGAATGGCGC
CGTCGAACTTGTGCAGAGCGTCACCTACCCGAAACCTGCTCCAACACAGA
AGCTGATCCAGTGCCGGTACTGTCCGGCGAAGTTCGAAAACGAGCAACGT
CACACGGTGCACCGGAAAATGCTACACCCGCGAGTAAACGCGCACGAAGG
GACGAGACTCTTGGCGAGTATGCGAGGTGGTGGGAAAGTCGCGATGTGGC
CGTGGGAAGCATTGGGCTTGGGCCGTTGCTGGGTGGCTCGCCTCGGCACG
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