mRNA_F-serratus_M_contig1.13.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1.13.1
Unique NamemRNA_F-serratus_M_contig1.13.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1.13.1 vs. uniprot
Match: D7FY24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY24_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.740e-21
Identity = 61/165 (36.97%), Postives = 73/165 (44.24%), Query Frame = 1 
Query:    1 AVDRELRPVTRGVRVSDSVKADVVISTVGGACAFQLHVNFSHGHVTDAVARAEQLAASFERCYVLLVRPNTDALQNFQLQLSPSCDARPLLVTLESEIVPEIQRVAQGVLNPASRVKRREYYKQASRPPGSNEPHRGILGELLRGLGVREWKKEADLLLDTFGSI 495
            A++R LR V RG RVS ++KADVVIST GG CAFQLH NFSHGHV +A+ +  +L                                                                            + PHRGIL ELLRGLGV +W++EADLLLD FGSI
Sbjct:    4 ALERGLRAVARGTRVSGTIKADVVISTGGGTCAFQLHTNFSHGHVAEALHQKLRL----------------------------------------------------------------------------DHPHRGILAELLRGLGVPDWRQEADLLLDAFGSI 92
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY24_ECTSI1.740e-2136.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1contigF-serratus_M_contig1:395655..400128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size660
Cds size660
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1.13.1prot_F-serratus_M_contig1.13.1Fucus serratus malepolypeptideF-serratus_M_contig1 395655..400128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928774.7025273-CDS-F-serratus_M_contig1:395654..3958171622928774.7025273-CDS-F-serratus_M_contig1:395654..395817Fucus serratus maleCDSF-serratus_M_contig1 395655..395817 -
1690962563.2005742-CDS-F-serratus_M_contig1:395654..3958171690962563.2005742-CDS-F-serratus_M_contig1:395654..395817Fucus serratus maleCDSF-serratus_M_contig1 395655..395817 -
1622928774.7133863-CDS-F-serratus_M_contig1:396191..3962941622928774.7133863-CDS-F-serratus_M_contig1:396191..396294Fucus serratus maleCDSF-serratus_M_contig1 396192..396294 -
1690962563.2095163-CDS-F-serratus_M_contig1:396191..3962941690962563.2095163-CDS-F-serratus_M_contig1:396191..396294Fucus serratus maleCDSF-serratus_M_contig1 396192..396294 -
1622928774.7245545-CDS-F-serratus_M_contig1:398040..3982001622928774.7245545-CDS-F-serratus_M_contig1:398040..398200Fucus serratus maleCDSF-serratus_M_contig1 398041..398200 -
1690962563.219571-CDS-F-serratus_M_contig1:398040..3982001690962563.219571-CDS-F-serratus_M_contig1:398040..398200Fucus serratus maleCDSF-serratus_M_contig1 398041..398200 -
1622928774.735975-CDS-F-serratus_M_contig1:399126..3992891622928774.735975-CDS-F-serratus_M_contig1:399126..399289Fucus serratus maleCDSF-serratus_M_contig1 399127..399289 -
1690962563.2440228-CDS-F-serratus_M_contig1:399126..3992891690962563.2440228-CDS-F-serratus_M_contig1:399126..399289Fucus serratus maleCDSF-serratus_M_contig1 399127..399289 -
1622928774.7479-CDS-F-serratus_M_contig1:400057..4001281622928774.7479-CDS-F-serratus_M_contig1:400057..400128Fucus serratus maleCDSF-serratus_M_contig1 400058..400128 -
1690962563.2749825-CDS-F-serratus_M_contig1:400057..4001281690962563.2749825-CDS-F-serratus_M_contig1:400057..400128Fucus serratus maleCDSF-serratus_M_contig1 400058..400128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1.13.1

>prot_F-serratus_M_contig1.13.1 ID=prot_F-serratus_M_contig1.13.1|Name=mRNA_F-serratus_M_contig1.13.1|organism=Fucus serratus male|type=polypeptide|length=220bp
AVDRELRPVTRGVRVSDSVKADVVISTVGGACAFQLHVNFSHGHVTDAVA
RAEQLAASFERCYVLLVRPNTDALQNFQLQLSPSCDARPLLVTLESEIVP
EIQRVAQGVLNPASRVKRREYYKQASRPPGSNEPHRGILGELLRGLGVRE
WKKEADLLLDTFGSIRGVCLQPLSGLLANCPIAGDTARLVHAFFNEKPVP
PLPCTMCPGEAGGCRLLPK*
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mRNA from alignment at F-serratus_M_contig1:395655..400128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1.13.1 ID=mRNA_F-serratus_M_contig1.13.1|Name=mRNA_F-serratus_M_contig1.13.1|organism=Fucus serratus male|type=mRNA|length=4474bp|location=Sequence derived from alignment at F-serratus_M_contig1:395655..400128- (Fucus serratus male)
GCCGTGGACAGGGAATTACGGCCGGTGACTCGAGGAGTTCGTGTCTCCGA
CAGCGTCAAGGCCGATGTGGTGTGAGTGTCAAAACGGGCGGTACAGCGGG
CGAACCGACAGCCTAGTCATGACAAGACCACTTTTCCCCGGCGTTACGCC
TTTTTTGTTTTTTGTTTTTGAGGACGATAGTATCTACAGGGCAACCTATT
GATACGGGTCATCGCCTCGTCAACGGACAAAAATTTAAATGTGTTTCGTG
GGGCTAGAACTTACCCGCCGAGAACAGGGATCCCCGGGGAACCCCCCCTC
GCCACCGTCTGGTTCCTGAGCGACTCCCTTGACAAACGGTGTTCGCGGCG
AGATTTCAAACTCGCGACTCCGCTGTCGACCCCGTGCAAGTATGACAGAG
GAGTTCTGATCAATATCGCCGTTCTGCTCAACGCTGACAGTAGCCGATGC
TCAAACTCGACCCTTACGTCATGCGAAGTTCCCCGGATTTCAACCGCAGT
CGATCGGAGGGATAAGAGGGCTCCCAGAGTAGTCAAGGAAAAGCAAGGGT
ACTGTATTCCTACCTCTGGCGGCGGCACGTTGGCGGCCAACGCGCGCTCG
CTACAGCGTACAACAAGCGAATCCACGGCAAGCGCCCATGCGCGGATTGC
GAGCGGAAGCACCGTGGACCACCGACTCCTGTCGAGGAACTGCGATGTCG
AGACACCACAAGTAGTGAAGAGCAAGTAGTGGCGAAGAGCGAGTTACCCA
GTGATCCGCGCTTGATTGCGTCTGACGAACCTTTCAAGCACGAGCGAGAT
AATGTGAAGCTTTTTGGCGTGCGTTCCGCGTTGTTGCAGCATCAGCACGG
TGGGTGGAGCGTGCGCCTTCCAGCTCCACGTGAACTTCAGCCACGGCCAC
GTGACCGACGCCGTTGCTCGGGCGGAACAGCTGGCGGCCAGCTTCGAGAG
ATGCTACGTGCTCCTGGTTCGCCCGAACACGGACGCTCTGCAGAACTTCC
AGGTGCGTTCGTGATCGGTGGATGGTTGGTTGTTCGTCCCCCGCGATGGG
TAACCTCTGTGACTGTACAGTAGTAGTAGTGCGAGAGCTTTTTCTCTCTG
ATGGTTTGCTCGCGTCGATTATGGTGCCTTCCATTGAAGCCAGTGAAGAC
AACTGTTGCTCTATTTGTTGCTGTTGAGAGGTCTAGGCAAGTCATTTTGT
GTTTTGAGACCTGAGGGGTTCAACGATTGGGGAGGGCAGGGACACGGCGA
TTTCAGGTTACCTACATCCCCGTTGGTGAAATTTATCGCATTCGACCAGG
GGGTTAATCAAAAATCCCCGGTAGGGACTGCCCGCCCCAATCGTTAAACT
GGTCACCTCTTGGTGAAAACCGCAGCACAAAAATGTAGCTCAGGTTGCAG
CACATTCCATTGCCCCTTCGGCATCAGGTGACAAATGTTATTATTATTAT
ATTATTTGTTCCCGAATCGGGGAGGGACCTTTCCTGTGCCCCCCGCCCCC
AATCCCTCTCTCTAGAGTTTAGACGCAAGACTCAAACTTCCATCGGTACG
TACTTTTTGTTGTGAAATTGCAAGCAAAACACACAATAATGTCGGGCAAG
TGTTTTTATTGTGCAACGAAGTGAAACACTTGAAAACAAAAAGTGGCCGC
AAGCAATCGTAGATTACACACCTAGATTACTATTTATAGCTACTGCAACT
GTCGGGAGCGCAAACGAAGTATCGTAGACGGAACACTCGAAAAGGTGTAC
TGGAATTCGGCAGGAGTCCCGCGAGTAAGCACCAGATTCAGCCTTGAGTA
TGGAGAATGAGCAGGCTGACGCGGGACGGGACGGCTGAACCCGTTTTGCA
CTTGTTTAGTTATTTCACACCCGTGCGGCTCTAGAGTCCTCCTCCCACTA
TAAATTCGCCCCGTGCGCCCGCCCGCAGCTCCAGCTGTCACCCTCCTGCG
ACGCACGGCCTCTGTTGGTGACGCTGGAGAGCGAAATCGTACCCGAGATC
CAGCGGGTGGCGCAAGGAGTGCTCAACCCGGCCTCCAGAGTCAAGCGCCG
CGAGTACTATAAGCAGGCGAGTCGTCCGCCAGGATCGAGTTCAAGTGCAT
GTTGCCCGGGTGGGGAGGAGACGATCTGCGGCCTGCACCATGCCACCTGT
GAGTTAGAAGCGCTAAACCACTAGACTAGTCTAGTGGCTTAGCGCTTCTA
ACTTGCCAAACGATTTGCGCGGAACAACAGTGATCTCCGGGGATCCCCCC
TCGCCACGCACTGCAGTATCTACAATGGCCGCAACTAACTTTTTCATCGT
TACCGGGGATTGAACCGCGAAAATCCTTTGTAAGTCAGAAGCGCTAAACC
ACTAGACTAAAGCAACCAGTATTTCTGTCGAAGTTTTAAAAGATTTGCCT
ATTAGATTTATAAAAGGGTAAACTTTAGTATTTTTCTTATAAACAACTTT
AATTAGGTGATTATTATCTTTTGTATTAGGTATTTATTTTTCGTATTATT
ATGTTTTTTAGTCCCTTAGAACAATTTCAAATACTTCCATTTTTTAGTTT
TGGTATCGCTTTATTTGATTTTTCGATAACCAACGCAATGATTACAACTT
TTCTTGGTTTAGGGTTTTTCTTGTTTGTCCATTATTGTCTTTCAGTTTAT
AGTTTTAGTTGTTTTCCTAACCGTTGGCAATTGCTTATTGAAGGACTCTA
TTTAACTACGGCAGGTCTAATTTGGGACAGTATTGGTCCAGCGGGTCAAA
AATATTTCCCATTCATTTTTATGATCCTTATTCGTTTACTATAACTAGAT
GAGTCATGACTAGTCTAGTGGTTTAGCGCTTCTGACTAACAAAAGATATT
TTCTGTTCAATCCCCGGTAACGATGGAATTTAGTTGCGGCCATAGATACT
GCAGTGCGTGGCGAGGGGGGGTCTCCGGAGATCACTGTTGTTCCGCGCAA
ATATTTGGTAAGTTAGAAGCGCTAAACCACTAGACTACTCAGTCATGACT
CAGTAGTCTAGTGGATTAGGGCTTCTAATTTACCAAATCTACAATGGTCG
TAACTAACTTTTTCATCGTTACCGGGGATTGAACCGCGAAAATCCTTTGT
AAGTTAGAAGCGCTGAACCACTAGACTACTGAGTCATGAGTAGTCTAGTG
GTTTTGCGCTTCTAACTTACAAAGGGTTTTCGCGGTTCAGTCCCCGGTAA
CGATGAAAAAGTCAGTTGCGGCCATTGCAGATACTGCAGTGCGTGGCGAG
GGGAGGTCCCCGGAGATCACTGTTTAAAGAAAATACAGAACGTACCTAGA
CCTTCTGAGCATCCCCCTGTCAGGGGGAAAAACTGTTCCGCGCAAATATT
TCGTAAGTTAGAAGCGACAAACCACTGGACTACTGAGTCATGACACAGTA
GTCTAGTGGTTTAGCGCTTCTAACTTACACCACCAACTATTTTTTATTTT
TTTTATAGCTTGTTTAGTACGTATCACTTAGCTAGGAAAAACAAACATGC
GTTTTGGAAATATTTTCGTCCCGGCGCGCGTTCGCGTTGGCTTTTACACT
TTCGCTGCCACGTGCGGCGTTTTCAAGCAGATTTCACTTGATTAATTCAC
AGTGAGTGTAGAAAACGCACCAAGTTCGTCACGGCCGGCAGGACACTCAA
CACAAGGCCGCCCCGCCCCCAAAGAAATGATTGATCCTTATCTTGAGTTC
TTGCCGCCACGAAGGGGTACGACACCAGCGATGCTAAGATGCTAAGAATG
ACATCGAAGCACCCCAAGTATCAATACTACACTGATAGATCCGACGGATG
CGTCAGTTGCAGGTTCACCATGGTCTGCGTTCAGACGAGCCCCACCGAGG
CATTCTGGGGGAACTGCTTCGAGGGCTCGGGGTGCGCGAGTGGAAAAAGG
AGGCCGACCTTCTCCTCGACACCTTTGGGTCCATCAGGTACTGGGGGGCT
AGGGGAGCAAACCAGGACCGAAGACATTTGCGACTCTAGTAGCATGGTCA
CGAGGTTCGCACTCACCGGCGTCGACGCCCCATCCGCGATTTATTGTTCC
ATCGATGGTTTGTCTTTCCTGTTCATGTTGTTGTAAGGTCGCCCGGCATC
GGCTAGGCTGTTACTATCCTAGTATCCCCCTTGTTTCATCGCGACGGATC
GGTCTTTTGTTAGTGTCGCTGCACAACAAGAGTCGTAAGTCGGAGGCAGC
ATCAACCTTGCGCAGTTCCATAACTTAAGAGGTACTCCGCCGTCTGACTG
ATTTCGCATCCGGTTCACAATCCCTCCTTGGCCATCACCCCTTCAAACGT
AACTTGCCAAGGGGCGTGTGCTTGCAGCCGCTGTCGGGGCTCCTGGCGAA
CTGTCCAATCGCCGGGGACACGGCACGCCTCGTGCACGCCTTCTTCAACG
AGAAACCCGTCCCTCCTTTGCCGTGCACCATGTGCCCGGGGGAGGCGGGA
GGCTGCCGGCTGTTGCCAAAGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1:395655..400128-

>mRNA_F-serratus_M_contig1.13.1 ID=mRNA_F-serratus_M_contig1.13.1|Name=mRNA_F-serratus_M_contig1.13.1|organism=Fucus serratus male|type=CDS|length=1320bp|location=Sequence derived from alignment at F-serratus_M_contig1:395655..400128- (Fucus serratus male)
GCCGTGGACAGGGAATTACGGCCGGTGACTCGAGGAGTTCGTGTCTCCGA
CAGCGTCAAGGCCGATGTGGTGCCGTGGACAGGGAATTACGGCCGGTGAC
TCGAGGAGTTCGTGTCTCCGACAGCGTCAAGGCCGATGTGGTCATCAGCA
CGGTGGGTGGAGCGTGCGCCTTCCAGCTCCACGTGAACTTCAGCCACGGC
CACGTGACCGACGCCGTTGCTCGGGCGGAACAGCTGGCGGCCAGCTTCGA
GAGATGCTACGTGCTCCTGGTTCGCCCGAACACGGACGCTCTGCAGAACT
TCCAGCATCAGCACGGTGGGTGGAGCGTGCGCCTTCCAGCTCCACGTGAA
CTTCAGCCACGGCCACGTGACCGACGCCGTTGCTCGGGCGGAACAGCTGG
CGGCCAGCTTCGAGAGATGCTACGTGCTCCTGGTTCGCCCGAACACGGAC
GCTCTGCAGAACTTCCAGCTCCAGCTGTCACCCTCCTGCGACGCACGGCC
TCTGTTGGTGACGCTGGAGAGCGAAATCGTACCCGAGATCCAGCGGGTGG
CGCAAGGAGTGCTCAACCCGGCCTCCAGAGTCAAGCGCCGCGAGTACTAT
AAGCAGGCGAGTCGTCCGCCAGGATCGACTCCAGCTGTCACCCTCCTGCG
ACGCACGGCCTCTGTTGGTGACGCTGGAGAGCGAAATCGTACCCGAGATC
CAGCGGGTGGCGCAAGGAGTGCTCAACCCGGCCTCCAGAGTCAAGCGCCG
CGAGTACTATAAGCAGGCGAGTCGTCCGCCAGGATCGAACGAGCCCCACC
GAGGCATTCTGGGGGAACTGCTTCGAGGGCTCGGGGTGCGCGAGTGGAAA
AAGGAGGCCGACCTTCTCCTCGACACCTTTGGGTCCATCAGACGAGCCCC
ACCGAGGCATTCTGGGGGAACTGCTTCGAGGGCTCGGGGTGCGCGAGTGG
AAAAAGGAGGCCGACCTTCTCCTCGACACCTTTGGGTCCATCAGGGGCGT
GTGCTTGCAGCCGCTGTCGGGGCTCCTGGCGAACTGTCCAATCGCCGGGG
ACACGGCACGCCTCGTGCACGCCTTCTTCAACGAGAAACCCGTCCCTCCT
TTGCCGTGCACCATGTGCCCGGGGGAGGCGGGAGGCTGCCGGCTGTTGCC
AAAGTAAGGGCGTGTGCTTGCAGCCGCTGTCGGGGCTCCTGGCGAACTGT
CCAATCGCCGGGGACACGGCACGCCTCGTGCACGCCTTCTTCAACGAGAA
ACCCGTCCCTCCTTTGCCGTGCACCATGTGCCCGGGGGAGGCGGGAGGCT
GCCGGCTGTTGCCAAAGTAA
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