mRNA_F-distichus_contig10577.485.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10577.485.1 vs. uniprot
Match: D7FRK0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK0_ECTSI) HSP 1 Score: 323 bits (827), Expect = 3.780e-92 Identity = 250/599 (41.74%), Postives = 301/599 (50.25%), Query Frame = 2
Query: 1484 MSRDQFLQANFHFLLHDPTW----TKGDGTSASPVYQEAFFDPDVLVDWDTVDTVRLFRKVSRRQKPVSR------EENARKNSINSSVRASDASDACGNI---------QDNDGEGYSKHRDKDNESCTDEDKKNRVGVSWGS----------------------------ALVQPKVLQDATMTAKGISSAGDQGGGGNDGVDGDD-----EWRCPICLQSPIAPRLTKCGHGPFCLVCILRHLRGEAYARCPLCFDNVHRDRLRRAICEEVVPFKPGRRASLLLLQRGRTSLAP------KAIAGGEPGGGDG-VAGTKNDVPGAV--------GACPREGDDSERYSRLVTAKASTLHHLAVAEQASLQRFRLESIASGETEWVPFVSEAQASVTAQVQRFS----TILVDRVAPDELSPSP------GAGTRPRRPRQPLTPPAELS-------------------RVEDHDQGQKRSXXXXXXXXXXXXXXXXGPRKGKR-----APGEDADGRRGSNDHDGQGVESTGRDATLPKEEATGXXXXXXXXXXXAFRFFQSLDGQRAFLHPLDMRQLLDDVDKGLPLPDRIDAQV 2977
MS++QFLQANFHFLLH+P W T GD SASP QEAFFDPDVLVDWDTVDTVRLFR+VSRR++ VS + N + SDA G + ++ G + + T GVSWGS A P L + ++S G +DG D+ +W CPICL P+APR+TKCGHGPFCLVCILRHL GEA ARCPLCFD + R++LRRA C++V P+ PG ASLLLL+R R+SL P K A G PGG + G GAV G CP EGD SER+SRLV A STL LA AEQ +L FR SIASGETEWVP++S+AQA V AQ+ RF+ T + + A L P G P TPP S RV+ + + S G AP +GS D + + R XXXXXXXXXXX FRFFQS+DGQ+AFLHPLDMRQLL+D ++GLPLP RIDA+V
Sbjct: 1 MSKEQFLQANFHFLLHNPAWSATTTTGDARSASPGLQEAFFDPDVLVDWDTVDTVRLFRRVSRRKQAVSPPPAVKVKPNPTPPATGXXXXXQGTSDASGCLSGAATAAAPKEEGGPAEREGVPPGFKGLTVLRAAAEEGVSWGSTSXXXXXXXXXXXXXXXXXXXXXREASAAAESPLALAMSDGVQSRVASPSGDGAADDDGTQEDETGEEGDWTCPICLGVPVAPRVTKCGHGPFCLVCILRHLDGEASARCPLCFDKMQRNQLRRAACQDVRPYVPGGTASLLLLRRKRSSLVPVQSASDKGTASGVPGGATASIPGXXXXXXGAVDEGWAAAGGVCPAEGDGSERFSRLVRAAPSTLRDLAAAEQMALLSFRHSSIASGETEWVPYISQAQALVKAQLDRFAGVPPTTITAKTATSGLKPQERTAVGRGGLVASGSPAVDATPPGTKSISAETPPHGXXXXXXXXXRRVDSAQRVEADSSSPVGLENGAGTTVGRGSGGSXXGSLVVAPEAAQPSAKGSXXSDKPSLGT--RXXXXXXXXXXXXXXXXXXXXXXPFRFFQSVDGQKAFLHPLDMRQLLEDAERGLPLPPRIDAKV 597
BLAST of mRNA_F-distichus_contig10577.485.1 vs. uniprot
Match: A0A6H5KXX5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX5_9PHAE) HSP 1 Score: 310 bits (794), Expect = 1.140e-87 Identity = 232/587 (39.52%), Postives = 283/587 (48.21%), Query Frame = 2
Query: 1484 MSRDQFLQANFHFLLHDPTW----TKGDGTSASPVYQEAFFDPDVLVDWDTVDTVRLFRKVSRRQKPVS-------------------------------------------REENARKNSINSSVRASDASDACGNIQDNDGEGYSKHRDKDNESCTDEDKKNRVGVSWGSALVQPKVLQDATMTAKGISSAGDQGGGGNDGVDGDD-----EWRCPICLQSPIAPRLTKCGHGPFCLVCILRHLRGEAYARCPLCFDNVHRDRLRRAICEEVVPFKPGRRASLLLLQRGRTSLAP------KAIAGGEPGGGDGVAGTKNDVPGAV----------GACPREGDDSERYSRLVTAKASTLHHLAVAEQASLQRFRLESIASGETEWVPFVSEAQASVTAQVQRFSTI----LVDRVAPDELSPSPGAGTRPR----RPRQPLTPPA--ELSRVEDHDQGQKRSXXXXXXXXXXXXXXXXGPRKGKRAPGEDADG-----------RRGSNDHDGQGVESTGRDATLPKEEATGXXXXXXXXXXXAFRFFQSLDGQRAFLHPLDMRQLLDDVDKGLPLPDRIDAQV 2977
MS++QFLQANFHFLLH+P W T GD SASP QEAFFDPDVLVDWDTVDTVRLFR+VSRR++ VS A + + + A AL P+ +Q + A ++S G +DG G++ +W CPICL P+APR+TKCGHGPFCLVCILRHL EA ARCPLCFD +HR++LRRA C +V P+ PG ASLLLL+R R+SL P K A G PGG A N G CP EGD+SER+SRLV A STL LA AE +L FR SIASGETEWVP++S+AQA V AQ+ RF+++ + A L P A R P TPP +S G G G+ + G + +GS+ D + +T + XXXXXX FRFFQS DGQ+AFLHPLDMRQLLDD ++GLPLP RIDA+V
Sbjct: 1 MSKEQFLQANFHFLLHNPAWSAATTTGDARSASPGLQEAFFDPDVLVDWDTVDTVRLFRRVSRRKQAVSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEREGVPPGFKGLTVLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAESPVALAIPEGVQ--SKVASRVASPSGDGAADDDGAQGEEMGEEGDWTCPICLGMPVAPRVTKCGHGPFCLVCILRHLNSEASARCPLCFDKMHRNQLRRAACRDVRPYVPGGTASLLLLRRERSSLVPVQSASDKGTASGVPGG----ATASNPAXXXXXXXXXXXXXXGVCPAEGDESERFSRLVRAAPSTLRDLAAAEHMALLSFRHSSIASGETEWVPYISQAQALVKAQLDRFASVPPTAITATAATGSLKPQERAAVRRGGALGSPEVSSTPPGTTSISAETPSHAGGGAQRVGADSSSPVGLEDGGGTTVGRGSGGSSSGSLMAAPEAAQLSAKGSSRGDKPSLGTTS--SXXXXXXXXXXXXXXXEGSGGPFRFFQSTDGQKAFLHPLDMRQLLDDAERGLPLPPRIDAKV 579
BLAST of mRNA_F-distichus_contig10577.485.1 vs. uniprot
Match: A0A835YQ46_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ46_9STRA) HSP 1 Score: 129 bits (325), Expect = 4.380e-27 Identity = 77/200 (38.50%), Postives = 103/200 (51.50%), Query Frame = 2
Query: 1970 WRCPICLQSPIAPRLTKCGHGPFCLVCILRHLRGEAYARCPLCFDNVHRDRLRRAICEEVVPFKPGRRASLLLLQRGRTSLAPKAIAGGEPGGGDGVAGTKNDVPGAVGACPREGDDSERYSRLVTAKASTLHHLAVAEQASLQRFRLESIASGETEWVPFVSEAQASVTAQVQRFSTILVDRVAPDELSPSPGAGTRPR 2569
WRCPICL+ P PR+T+CGHGPFC VCILRHL GE Y RL A+ P G+ AS +LL R + L P+ + GGG CP+EG + +SRLV AK L E A L FR ES+A G+TEW+P++S+A+A + + + S ++P + SP A + PR
Sbjct: 133 WRCPICLEHPRCPRITRCGHGPFCAVCILRHLGGEPYRXXXXXXXXXXXXRLAGALLRAHKPPVAGQSASFVLLLRDKEELIPRGVD--RWGGGS-----------CTAWCPKEGQPAATFSRLVLAKPQQLLQRMATEDAELAAFREESLAGGDTEWLPYISQARALLVERRAQLSAKGALALSP---TASPRANSAPR 316
BLAST of mRNA_F-distichus_contig10577.485.1 vs. uniprot
Match: A0A067CCR8_SAPPC (RING-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CCR8_SAPPC) HSP 1 Score: 82.4 bits (202), Expect = 1.670e-12 Identity = 60/178 (33.71%), Postives = 84/178 (47.19%), Query Frame = 2
Query: 1973 RCPICLQSPIAPRLTKCGHGPFCLVCILRHLR-GEAYA-RCPLCFDNVHRDRLRRAIC--EEVVPFKPGRRASLLLLQRGRTSLAPKAIAGGEPGGGDGVAGTKNDVPGAVGACPREGDDSERYSRLVTAKASTLHHLAVAEQASLQRFRLESIASGETEWVPFVSEAQASVTAQVQR 2494
RCPICL + AP++T+CGH FC CIL +L E Y RCP+CFD+V + LR + E +P R A+ LL R + S P G G P D R+SR++ A AS L + E LQR +E+ +SGE +P + E Q+++
Sbjct: 127 RCPICLDTLRAPKITRCGH-TFCWSCILMYLSLSENYWWRCPMCFDSVKKTDLRSVLVDRERSMP-SVNRAATFALLHRSKGSWFPHLPTTGSRSG-----------------VPSVHSDDGRFSRILEASASYLREMVEGELLDLQRLHVEAESSGERNMLPVIQEGITFCEKQLEK 285
BLAST of mRNA_F-distichus_contig10577.485.1 vs. uniprot
Match: UPI001E1DC3A3 (RING finger protein 10-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DC3A3) HSP 1 Score: 80.1 bits (196), Expect = 9.040e-12 Identity = 78/306 (25.49%), Postives = 114/306 (37.25%), Query Frame = 2
Query: 1310 NHLLNFQFQPVSGVQGSHGHHDHDGKPSGRKGNGSSKG---SKGRYIKSGRGWGGDSELGPMSRDQFLQANFHFLLHDPTWTKGDGTSASPVYQEAFFDPDVLVDWDTVDTVRLFRKVSRRQKPVSREENARKNSINSSVRASDASDACGNIQDNDGEGYSKHRDKDNESCTDEDKKNRVGVSWGSALVQPKVLQDATMTAKGISSAGDQGGGGNDGVDGDDEWRCPICLQSPIAPRLTKCGHGPFCLVCILRHLR-GE-AYARCPLCFDNVHRDRLRRAICEEVVPFKPGRRASLLLLQRGRTSL 2212
NHLLNF ++ H+ P G +G G G S+GR I+ + S+L +++QFLQAN F++ D GD Y DPDVLVDWD V+ VR+ G + CPICLQ PIA ++T+CGH +C CIL +L GE + +CP+C+++VH D L+ A+C EV FK G ++ L+++ + S+
Sbjct: 114 NHLLNFTYE-------------HEINPGGNRGAGYGGGAHWSRGRQIRYRNAYSRSSKL-CYNKEQFLQANCQFVVKDA----GD-------YSVHLMDPDVLVDWDKVEQVRVI--------------------------------------------------------------------------------------------------------GTEPPSCPICLQYPIAAKMTRCGH-IYCWACILHYLALGEKTWRKCPICYESVHSDDLKSAVCREVGNFKVGDTITMTLMKKEKGSI 289
BLAST of mRNA_F-distichus_contig10577.485.1 vs. uniprot
Match: A0A418EWD5_9STRA (RING-type domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EWD5_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.920e-11 Identity = 61/198 (30.81%), Postives = 94/198 (47.47%), Query Frame = 2
Query: 1961 DDEWRCPICLQSPIAPRLTKCGHGPFCLVCILRHLR--GEAYARCPLCFDNVHRDRLRRAICEE--VVPFKPGRRASLLLLQRGRTSLAPKAIAGGEPGGGDGVAGTKNDVPGAVGACPREGDDSERYSRLVTAKASTLHHLAVAEQASLQRFRLESIASGETEWVPFVSEAQASVTAQVQRFSTILVDRVAPDELSP 2542
D + RCPICL + AP++T+CGH +C CIL +L + RCP+CFD V + LR + + +P G A+ + RGR S P P + TKN P G P + +SR++ + S L + +E+ L E+ +SG+ +P + EA A +R + + APDE +P
Sbjct: 107 DADHRCPICLDTLRAPKITRCGHA-YCWHCILTYLSLTENYWRRCPMCFDAVKKHDLRSVLIDRHRTIP-SVGSSATFRYIHRGRGSWFPHL-----PAPQAAPSSTKNYHPQQKGGIPSVHGANAVFSRILESTPSYLESMIQSEKEDLDALAAEAQSSGDDHALPVIQEALAYCE---KRLAKLRGSSTAPDEPAP 294
BLAST of mRNA_F-distichus_contig10577.485.1 vs. uniprot
Match: W4H9W9_9STRA (RING-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9W9_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 5.350e-11 Identity = 61/199 (30.65%), Postives = 93/199 (46.73%), Query Frame = 2
Query: 1961 DDEWRCPICLQSPIAPRLTKCGHGPFCLVCILRHLR--GEAYARCPLCFDNVHRDRLRRAICEE--VVPFKPGRRASLLLLQRGRTSLAPKAIAGGEPGGGDGVAGTKNDVPGAVGACPREGDDSERYSRLVTAKASTLHHLAVAEQASLQRFRLESIASGETEWVPFVSEAQASVTAQVQRFSTILVDRVAPDELSPS 2545
D + RCPICL + AP++T+CGH +C CIL +L + RCP+CFD V + LR + + +P G A+ + RGR S P P + TKN P G P + +SR++ + S L + +E L E+ +SG+ +P + EA A +R + + APDE P+
Sbjct: 106 DADHRCPICLDTLRAPKITRCGHA-YCWHCILTYLSLTENYWRRCPMCFDAVKKHDLRSVLIDRHRTIP-SVGSSATFRYVHRGRGSWFPHL-----PAPQAAPSSTKNHHPQQKGGIPSVHGANAVFSRILESTPSYLESMIQSETEDLDALAAEAKSSGDDHALPVIQEALAYCE---KRLAKLRGPSTAPDEPVPT 294
BLAST of mRNA_F-distichus_contig10577.485.1 vs. uniprot
Match: W4HC13_9STRA (RING-type domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HC13_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 5.480e-11 Identity = 61/199 (30.65%), Postives = 93/199 (46.73%), Query Frame = 2
Query: 1961 DDEWRCPICLQSPIAPRLTKCGHGPFCLVCILRHLR--GEAYARCPLCFDNVHRDRLRRAICEE--VVPFKPGRRASLLLLQRGRTSLAPKAIAGGEPGGGDGVAGTKNDVPGAVGACPREGDDSERYSRLVTAKASTLHHLAVAEQASLQRFRLESIASGETEWVPFVSEAQASVTAQVQRFSTILVDRVAPDELSPS 2545
D + RCPICL + AP++T+CGH +C CIL +L + RCP+CFD V + LR + + +P G A+ + RGR S P P + TKN P G P + +SR++ + S L + +E L E+ +SG+ +P + EA A +R + + APDE P+
Sbjct: 116 DADHRCPICLDTLRAPKITRCGHA-YCWHCILTYLSLTENYWRRCPMCFDAVKKHDLRSVLIDRHRTIP-SVGSSATFRYVHRGRGSWFPHL-----PAPQAAPSSTKNHHPQQKGGIPSVHGANAVFSRILESTPSYLESMIQSETEDLDALAAEAKSSGDDHALPVIQEALAYCE---KRLAKLRGPSTAPDEPVPT 304
BLAST of mRNA_F-distichus_contig10577.485.1 vs. uniprot
Match: A0A0A9CTC2_ARUDO (RING-type domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9CTC2_ARUDO) HSP 1 Score: 77.8 bits (190), Expect = 5.540e-11 Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 2
Query: 1967 EWRCPICLQSPIAPRLTKCGHGPFCLVCILRHL-------RGEAYARCPLCFDNVHRDRLRRAICEEVVPFKPGRRASLLLLQRGRTSLAP 2218
E RCPICL+SP+ P++T CGH +C CILR+L RGE + +CPLCF + L +V F+ G A+ LL R R SL P
Sbjct: 239 EVRCPICLESPLCPQITSCGH-IYCFPCILRYLIMGKEDYRGECWKKCPLCFMMISTKELYTIYITQVQHFRAGDVATFTLLSRSRNSLTP 328
BLAST of mRNA_F-distichus_contig10577.485.1 vs. uniprot
Match: A0A0A9UUG6_ARUDO (RING-type domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9UUG6_ARUDO) HSP 1 Score: 77.4 bits (189), Expect = 9.530e-11 Identity = 41/91 (45.05%), Postives = 52/91 (57.14%), Query Frame = 2
Query: 1967 EWRCPICLQSPIAPRLTKCGHGPFCLVCILRHL-------RGEAYARCPLCFDNVHRDRLRRAICEEVVPFKPGRRASLLLLQRGRTSLAP 2218
E RCPICL+SP+ P++T CGH +C CILR+L RGE + +CPLCF V L +V F+ G A+ LL R R SL P
Sbjct: 233 EVRCPICLESPLCPQITSCGH-IYCFPCILRYLIMGKEDYRGECWKKCPLCFMMVSTKDLYTIYITQVQHFRAGDIATFTLLSRSRNSLTP 322 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10577.485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10577.485.1 >prot_F-distichus_contig10577.485.1 ID=prot_F-distichus_contig10577.485.1|Name=mRNA_F-distichus_contig10577.485.1|organism=Fucus distichus monoicous|type=polypeptide|length=821bp MVRGTTGKLDASAPAFSPFWDHSQPQQRQEQQQQDHHRRGEGQDPSESSAback to top mRNA from alignment at F-distichus_contig10577:4804..10368+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10577.485.1 ID=mRNA_F-distichus_contig10577.485.1|Name=mRNA_F-distichus_contig10577.485.1|organism=Fucus distichus monoicous|type=mRNA|length=5565bp|location=Sequence derived from alignment at F-distichus_contig10577:4804..10368+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10577:4804..10368+ >mRNA_F-distichus_contig10577.485.1 ID=mRNA_F-distichus_contig10577.485.1|Name=mRNA_F-distichus_contig10577.485.1|organism=Fucus distichus monoicous|type=CDS|length=4926bp|location=Sequence derived from alignment at F-distichus_contig10577:4804..10368+ (Fucus distichus monoicous)back to top |