mRNA_F-distichus_contig10503.440.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10503.440.1
Unique NamemRNA_F-distichus_contig10503.440.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10503.440.1 vs. uniprot
Match: Q6XLV5_9PHYC (FirrV-1-F2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLV5_9PHYC)

HSP 1 Score: 115 bits (288), Expect = 5.260e-28
Identity = 75/205 (36.59%), Postives = 109/205 (53.17%), Query Frame = 1
Query:    1 SYPRMPLEKLHQRLVKHCQDVYTKEFLEAHEHITNKCTGVQCVFMVENDQLVVCFRGSDSETDWRMNFHVSQ----SEYPTGSGCFVHSGFLVQWVSIEAQFKQMLQNFMETHGEGLNEVVFCGHSAGGQCIIAAYACKEILDQYKLPVKAVTFGSPRLGDANFK-ERVESTMDITRIVLDRDAITRVPVL-SYQHVGKPIQIRD 597
            SYP   L   H  L   C+DVY      +  ++ +  TG Q    ++  Q+VVCFRGSDS  DW++N  + +    S         VHSGF +   SI+A+    L  F+ + GE  + ++F GHS+GG   +AA A  +  +   LPV+ VTFGSP+LG+A+   E  E     TR+V D DAI  +P+   + HVG  + I+D
Sbjct:   31 SYPSPALTDKHLELATLCRDVYCNGTESSDTYVKSNDTGAQATVRLKGKQVVVCFRGSDSPQDWKLNLQLYRVPFISRTHKNPANEVHSGFFIGHHSIKAKIYTKLNAFIAS-GE-CDSILFTGHSSGGA--LAAIAAFDFRNDKHLPVEVVTFGSPKLGNASLAVEYSERITRCTRVVNDNDAIALMPLSRGFHHVGNTLHIQD 231          
BLAST of mRNA_F-distichus_contig10503.440.1 vs. uniprot
Match: UPI001F04F997 (uncharacterized protein LOC124452008 n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04F997)

HSP 1 Score: 81.6 bits (200), Expect = 1.640e-14
Identity = 51/153 (33.33%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  139 ENDQLVVCFRGSDSETDWRMNFHVSQSEYPTGSGCFVHSGFLVQWVSIEAQFKQMLQNFMETHGEGLNEVVFCGHSAGGQCIIAAYACKEILDQYKLPVKAVTFGSPRLGDANFKERVESTMD--ITRIVLDRDAITRVP--VLSYQHVGKPI 585
            E++ +VV F+GS    DW+ N    +  YP  S C VH GF   +  ++ Q    +  F   +    ++V+  GHS GG   +A  A  +++ + +  V  +TFGSPR+G+  FKE V+S ++    R+   RD +T +P  +L Y+HVG  I
Sbjct:  848 EDNTIVVSFQGSADLIDWKNNLKFLKKSYPGCSNCKVHIGFFDSYSPLKQQMLDKVNAFFLLNPN--SKVLVTGHSLGGA--MATLAAVDLV-KTRYQVDLITFGSPRVGNKEFKELVDSNLNGLNLRVTYKRDPVTVIPPQLLGYRHVGLEI 995          
BLAST of mRNA_F-distichus_contig10503.440.1 vs. uniprot
Match: A0A0G4J2B0_PLABS (Lipase_3 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J2B0_PLABS)

HSP 1 Score: 76.6 bits (187), Expect = 2.750e-13
Identity = 49/166 (29.52%), Postives = 78/166 (46.99%), Query Frame = 1
Query:  121 QCVFMVENDQLVVCFRGSDSETDWRMNFHVS----QSEYPTGSGCFVHSGFLVQWVSIEAQFKQMLQNFMETHGEGLNEVVFCGHSAGGQCIIAAYACKEILDQYKLPVKAVTFGSPRLGDANFKERVESTM-DITRIVLDRDAIT-RVPVLSYQHVGKPIQIRDD 600
            Q       + LVV FRGS SE D++ +        +  +  G G  VH GF++QW SI AQ    +  ++   G+   ++   GHS GG   +      E        +   TFG+PR+G+  FK    S + +  R+V + D +T +V   + +HVG  +  R+D
Sbjct:   57 QAALFAYGNDLVVSFRGSMSEQDFKQDLSFKPTAFEEVFDVGDGARVHGGFMMQWRSIRAQLDLHVGAWLRRDGDARGQLFLTGHSLGGALAVITALYLEARFALGTRLLCATFGAPRVGNTWFKVAFRSMVANCYRVVNNADMVTAQVGGYALRHVGAVLHFRND 222          
BLAST of mRNA_F-distichus_contig10503.440.1 vs. uniprot
Match: UPI0018CDB85D (lipase family protein n=1 Tax=Pseudoalteromonas sp. SWXJZ94C TaxID=2792065 RepID=UPI0018CDB85D)

HSP 1 Score: 77.4 bits (189), Expect = 3.070e-13
Identity = 60/169 (35.50%), Postives = 84/169 (49.70%), Query Frame = 1
Query:   91 EHITNKCTGVQCVFMVEND-----QLVVCFRGSDSETDWRMNFHVSQSEYPTGSGCFVHSGFLVQWVSIEAQFKQMLQNFMETHGEGLNEVVFC-GHSAGGQCIIAAYACKEILDQYKLPVKAVTFGSPRLGDANFKERVESTMD-ITRIVLDRDAITRVPVLSYQHVG 576
            EH+ N  TG     + + D     ++V+ FRG+    D   + H   +  P      VH+GF   + SI+ Q    L N +   G   N  V C GHS GG   +A  A   I DQYK+PVK  TFGSPR+G   F  +VE++++ + R V   D +T VPV  + H G
Sbjct:   58 EHVLNHSTGFGFFGLGKADGNHKGEMVIAFRGTAGIADTLTDLHCGVTVGPNYKT--VHAGFNRTFESIKLQ----LANLLNKAG---NRPVHCVGHSLGGA--LATLAASWIKDQYKVPVKLYTFGSPRVGFNAFATQVETSLNGVYRAVHRSDPVTMVPVWPFIHAG 215          
BLAST of mRNA_F-distichus_contig10503.440.1 vs. uniprot
Match: UPI001F0398D4 (lipase-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0398D4)

HSP 1 Score: 76.6 bits (187), Expect = 4.890e-13
Identity = 52/185 (28.11%), Postives = 92/185 (49.73%), Query Frame = 1
Query:   43 VKHCQDVYTKEFLEAHEHITNKCTGVQCVFMVENDQLVVCFRGSDSETDWRMNFHVSQSEYPTGSGCFVHSGFLVQWVSIEAQFKQMLQNFMETHGEGLNEVVFCGHSAGGQCIIAAYACKEILDQYKLPVKAVTFGSPRLGDANFKERVESTMD--ITRIVLDRDAITRVP--VLSYQHVGKPI 585
            VK+    Y ++   A   + ++   +Q     + + +VV FRG+D   DW  N ++ + +Y     C VH+GF   + S++ Q    ++     H    + V+  G S GG   +A +A  + L +    V  +T+GSPRLG+  F E V++T++    R+    D ++ +P  +L Y HVG+ I
Sbjct:  144 VKYAAKAY-EDVEPADSRLVDEKNDIQGFVKYQGNTIVVSFRGTDDINDWFRNINILRKKYRGCKNCKVHTGFSNIYYSVQQQMFSKVKALSHVHSN--STVLVTGQSLGGA--LATFAAVD-LAKAGYHVDLITYGSPRLGNKEFSEYVDNTLNGLNLRVTFKNDYVSVLPPKLLGYWHVGQEI 322          
BLAST of mRNA_F-distichus_contig10503.440.1 vs. uniprot
Match: A0A3P3YMY9_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YMY9_PLABS)

HSP 1 Score: 76.6 bits (187), Expect = 8.700e-13
Identity = 49/166 (29.52%), Postives = 78/166 (46.99%), Query Frame = 1
Query:  121 QCVFMVENDQLVVCFRGSDSETDWRMNFHVS----QSEYPTGSGCFVHSGFLVQWVSIEAQFKQMLQNFMETHGEGLNEVVFCGHSAGGQCIIAAYACKEILDQYKLPVKAVTFGSPRLGDANFKERVESTM-DITRIVLDRDAIT-RVPVLSYQHVGKPIQIRDD 600
            Q       + LVV FRGS SE D++ +        +  +  G G  VH GF++QW SI AQ    +  ++   G+   ++   GHS GG   +      E        +   TFG+PR+G+  FK    S + +  R+V + D +T +V   + +HVG  +  R+D
Sbjct:  700 QAALFAYGNDLVVSFRGSMSEQDFKQDLSFKPTAFEEVFDVGDGARVHGGFMMQWRSIRAQLDLHVGAWLRRDGDARGQLFLTGHSLGGALAVITALYLEARFALGTRLLCATFGAPRVGNTWFKVAFRSMVANCYRVVNNADMVTAQVGGYALRHVGAVLHFRND 865          
BLAST of mRNA_F-distichus_contig10503.440.1 vs. uniprot
Match: UPI001F04AF1A (lipase-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04AF1A)

HSP 1 Score: 74.7 bits (182), Expect = 1.990e-12
Identity = 50/152 (32.89%), Postives = 74/152 (48.68%), Query Frame = 1
Query:  139 ENDQLVVCFRGSDSETDWRMNFHVSQSEYPTGSGCFVHSGFLVQWVSIEAQFKQMLQNFMETHGEGLNEVVFCGHSAGGQCIIAAYACKEILDQYKL--PVKAVTFGSPRLGDANFKERVESTMD--ITRIVLDRDAITRVPVLS--YQHVG 576
            E+  +VV F+GS    DW+ N    Q  YP    C VH GF   +  ++ Q    +  F   +    + V+  GHS GG     A A    +D  K+   V  +TFGSPR+G+  FK+ V+S +     R+   +D +T +P  S  Y+HVG
Sbjct:  175 EDSTIVVSFQGSADLIDWKNNLKFLQKSYPGCPNCKVHIGFFDSYSPLKQQMLDKVNAFFLLNPN--SNVLVTGHSLGG-----AMATLAAIDLAKIRYQVDLITFGSPRVGNNEFKKHVDSNLKGLNLRVTYKKDPVTVIPPQSFGYRHVG 319          
BLAST of mRNA_F-distichus_contig10503.440.1 vs. uniprot
Match: A0A0M9FQ73_9TRYP (Lipase-like protein n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9FQ73_9TRYP)

HSP 1 Score: 73.6 bits (179), Expect = 5.010e-12
Identity = 48/153 (31.37%), Postives = 77/153 (50.33%), Query Frame = 1
Query:  142 NDQLVVCFRGSDSETDWRMNFHVSQSEYPT---GSGCFVHSGFLVQWVSIEAQFKQMLQNFMETHGEGLNEVVFCGHSAGG-QCIIAAYACKEILDQYKL-----PVKAVTFGSPRLGDANFKERVESTMD---ITRIVLDRDAITRVPVLSY 564
            N Q+VV +RGSD   +W ++      +Y     GSGC VH+GF++ ++S+       +   + T+      +V  GHS GG    +AA   +++L+         PV   T+GSPR+G+A F + V   +      RI   RD I R+P +S+
Sbjct:   90 NSQIVVAYRGSDDLANWLLDLLAVPVQYKPDDCGSGCKVHAGFMLSYLSLSTDTSDAVLTLLGTYPN--YGIVVTGHSLGGAMATLAAADLQDLLNHGNFTPAPQPVTLYTYGSPRVGNAAFAQWVTDLLSDGASYRITHSRDPIVRLPPISW 240          
BLAST of mRNA_F-distichus_contig10503.440.1 vs. uniprot
Match: A0A6S7HIG6_PARCT (Mastigoneme n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HIG6_PARCT)

HSP 1 Score: 73.2 bits (178), Expect = 1.250e-11
Identity = 48/153 (31.37%), Postives = 75/153 (49.02%), Query Frame = 1
Query:  151 LVVCFRGSDSETDWRMNFHVSQSEYPTGSGCFVHSGFLVQWVSIEAQFKQMLQNFMETHGEGLNEVVFCGHSAGGQCIIAAYACKEILDQYKLPVKAVTFGSPRLGDANFKERVESTMD--ITRIVLDRDAITRVPVLS--YQHVGKPIQIRD 597
            ++V FRG+     W  N    + +Y +  GC VH+GF   + S++ Q    +  F   H    ++V+  GHS GG   +A  A  E L +       +T+GSPR+G+  F E V+ TM+    R+   +D +T  P  S  Y HVG+ +   D
Sbjct:  474 IIVSFRGTVDTKGWINNAKFLKRDYQSCKGCKVHTGFSTFYNSVQMQLLAKVSAFSHAHPN--SKVIVTGHSLGGA--LATLAAVE-LAKAGYNTDLITYGSPRVGNKQFSEYVDKTMNGLNLRVTYKKDIVTASPPQSIGYWHVGREMHYTD 621          
BLAST of mRNA_F-distichus_contig10503.440.1 vs. uniprot
Match: UPI001F04104F (lipase-like isoform X2 n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04104F)

HSP 1 Score: 68.2 bits (165), Expect = 9.760e-11
Identity = 43/144 (29.86%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  169 GSDSETDWRMNFHVSQSEYPTGSGCFVHSGFLVQWVSIEAQFKQMLQNFMETHGEGLNEVVFCGHSAGGQCIIAAYACKEILDQYKLPVKAVTFGSPRLGDANFKERVEST---MDITRIVLDRDAITRVP--VLSYQHVGKPI 585
            GS  + DW  +  + +  Y     C VHSGF   +  +E Q  + ++   + H    ++++  GHS GG   IA  A  ++++  K  V  +TFGSPR+G+  F + +++T   +D+ R+    D +T +P  ++ Y+HVG+ I
Sbjct:   19 GSKYKIDWWRDLKILKKTYLGCPNCKVHSGFFQYYNLLETQMFEKVKALSDKHPG--SKIIVTGHSLGGA--IATLAAVDLVNA-KHTVDLITFGSPRVGNKEFAQYIDTTVKGLDL-RVTYKGDPVTDLPPKIIGYRHVGQEI 156          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10503.440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q6XLV5_9PHYC5.260e-2836.59FirrV-1-F2 n=1 Tax=Feldmannia irregularis virus a ... [more]
UPI001F04F9971.640e-1433.33uncharacterized protein LOC124452008 n=1 Tax=Xenia... [more]
A0A0G4J2B0_PLABS2.750e-1329.52Lipase_3 domain-containing protein n=1 Tax=Plasmod... [more]
UPI0018CDB85D3.070e-1335.50lipase family protein n=1 Tax=Pseudoalteromonas sp... [more]
UPI001F0398D44.890e-1328.11lipase-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=... [more]
A0A3P3YMY9_PLABS8.700e-1329.52Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
UPI001F04AF1A1.990e-1232.89lipase-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=... [more]
A0A0M9FQ73_9TRYP5.010e-1231.37Lipase-like protein n=1 Tax=Leptomonas pyrrhocoris... [more]
A0A6S7HIG6_PARCT1.250e-1131.37Mastigoneme n=1 Tax=Paramuricea clavata TaxID=3175... [more]
UPI001F04104F9.760e-1129.86lipase-like isoform X2 n=1 Tax=Xenia sp. Carnegie-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10503contigF-distichus_contig10503:5093..5692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue2.5e-21
Seed eggNOG ortholog2880.D8LPK4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size600
Cds size588
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.3782845-UTR-F-distichus_contig10503:5092..51041622928971.3782845-UTR-F-distichus_contig10503:5092..5104Fucus distichus monoicousUTRF-distichus_contig10503 5093..5104 +
1690885086.824832-UTR-F-distichus_contig10503:5092..51041690885086.824832-UTR-F-distichus_contig10503:5092..5104Fucus distichus monoicousUTRF-distichus_contig10503 5093..5104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.3939483-CDS-F-distichus_contig10503:5104..56921622928971.3939483-CDS-F-distichus_contig10503:5104..5692Fucus distichus monoicousCDSF-distichus_contig10503 5105..5692 +
1690885086.8357892-CDS-F-distichus_contig10503:5104..56921690885086.8357892-CDS-F-distichus_contig10503:5104..5692Fucus distichus monoicousCDSF-distichus_contig10503 5105..5692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10503.440.1prot_F-distichus_contig10503.440.1Fucus distichus monoicouspolypeptideF-distichus_contig10503 5105..5692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10503.440.1

>prot_F-distichus_contig10503.440.1 ID=prot_F-distichus_contig10503.440.1|Name=mRNA_F-distichus_contig10503.440.1|organism=Fucus distichus monoicous|type=polypeptide|length=196bp
MPLEKLHQRLVKHCQDVYTKEFLEAHEHITNKCTGVQCVFMVENDQLVVC
FRGSDSETDWRMNFHVSQSEYPTGSGCFVHSGFLVQWVSIEAQFKQMLQN
FMETHGEGLNEVVFCGHSAGGQCIIAAYACKEILDQYKLPVKAVTFGSPR
LGDANFKERVESTMDITRIVLDRDAITRVPVLSYQHVGKPIQIRDD
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mRNA from alignment at F-distichus_contig10503:5093..5692+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10503.440.1 ID=mRNA_F-distichus_contig10503.440.1|Name=mRNA_F-distichus_contig10503.440.1|organism=Fucus distichus monoicous|type=mRNA|length=600bp|location=Sequence derived from alignment at F-distichus_contig10503:5093..5692+ (Fucus distichus monoicous)
AGCTACCCCAGGATGCCACTCGAAAAACTCCACCAAAGGCTAGTCAAGCA CTGTCAGGACGTGTACACAAAAGAGTTTCTCGAGGCACACGAACATATTA CAAACAAGTGCACGGGCGTGCAGTGCGTCTTCATGGTGGAAAATGACCAA CTGGTCGTTTGTTTCAGAGGGAGCGACTCGGAAACCGATTGGCGCATGAA CTTCCACGTGTCTCAGAGCGAATACCCCACAGGTTCGGGGTGTTTCGTAC ACTCAGGTTTCCTCGTGCAATGGGTTTCCATCGAAGCACAGTTCAAGCAG ATGCTGCAGAACTTTATGGAAACTCATGGCGAAGGGTTGAACGAGGTGGT GTTCTGCGGCCATTCTGCGGGTGGCCAGTGCATCATTGCCGCATACGCTT GCAAGGAAATACTTGACCAATATAAACTACCGGTGAAGGCAGTCACATTT GGTTCCCCTAGACTGGGTGACGCAAACTTCAAGGAGAGAGTGGAATCGAC CATGGATATTACACGGATTGTGCTTGACAGAGATGCAATCACACGAGTGC CTGTTCTTAGCTACCAACACGTAGGGAAACCGATACAAATCCGCGACGAT
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Coding sequence (CDS) from alignment at F-distichus_contig10503:5093..5692+

>mRNA_F-distichus_contig10503.440.1 ID=mRNA_F-distichus_contig10503.440.1|Name=mRNA_F-distichus_contig10503.440.1|organism=Fucus distichus monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at F-distichus_contig10503:5093..5692+ (Fucus distichus monoicous)
ATGCCACTCGAAAAACTCCACCAAAGGCTAGTCAAGCACTGTCAGGACGT
GTACACAAAAGAGTTTCTCGAGGCACACGAACATATTACAAACAAGTGCA
CGGGCGTGCAGTGCGTCTTCATGGTGGAAAATGACCAACTGGTCGTTTGT
TTCAGAGGGAGCGACTCGGAAACCGATTGGCGCATGAACTTCCACGTGTC
TCAGAGCGAATACCCCACAGGTTCGGGGTGTTTCGTACACTCAGGTTTCC
TCGTGCAATGGGTTTCCATCGAAGCACAGTTCAAGCAGATGCTGCAGAAC
TTTATGGAAACTCATGGCGAAGGGTTGAACGAGGTGGTGTTCTGCGGCCA
TTCTGCGGGTGGCCAGTGCATCATTGCCGCATACGCTTGCAAGGAAATAC
TTGACCAATATAAACTACCGGTGAAGGCAGTCACATTTGGTTCCCCTAGA
CTGGGTGACGCAAACTTCAAGGAGAGAGTGGAATCGACCATGGATATTAC
ACGGATTGTGCTTGACAGAGATGCAATCACACGAGTGCCTGTTCTTAGCT
ACCAACACGTAGGGAAACCGATACAAATCCGCGACGATATGCCACTCGAA
AAACTCCACCAAAGGCTAGTCAAGCACTGTCAGGACGTGTACACAAAAGA
GTTTCTCGAGGCACACGAACATATTACAAACAAGTGCACGGGCGTGCAGT
GCGTCTTCATGGTGGAAAATGACCAACTGGTCGTTTGTTTCAGAGGGAGC
GACTCGGAAACCGATTGGCGCATGAACTTCCACGTGTCTCAGAGCGAATA
CCCCACAGGTTCGGGGTGTTTCGTACACTCAGGTTTCCTCGTGCAATGGG
TTTCCATCGAAGCACAGTTCAAGCAGATGCTGCAGAACTTTATGGAAACT
CATGGCGAAGGGTTGAACGAGGTGGTGTTCTGCGGCCATTCTGCGGGTGG
CCAGTGCATCATTGCCGCATACGCTTGCAAGGAAATACTTGACCAATATA
AACTACCGGTGAAGGCAGTCACATTTGGTTCCCCTAGACTGGGTGACGCA
AACTTCAAGGAGAGAGTGGAATCGACCATGGATATTACACGGATTGTGCT
TGACAGAGATGCAATCACACGAGTGCCTGTTCTTAGCTACCAACACGTAG
GGAAACCGATACAAATCCGCGACGAT
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