mRNA_F-distichus_contig104745.420.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104745.420.1
Unique NamemRNA_F-distichus_contig104745.420.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: D7FY71_ECTSI (DNA topoisomerase VI subunit A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY71_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.220e-51
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEV 270
            VLGKGIHITKRDMFYTDVKLF+EQ ESD+VLDDVACMVGCTRSCLNVVASDKGLVVGRVTF+EDGDLIDCTRMGVGGKAIPPYIDKIT +
Sbjct:  368 VLGKGIHITKRDMFYTDVKLFKEQSESDNVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFMEDGDLIDCTRMGVGGKAIPPYIDKITNI 457
[Close]
BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A6H5KKC7_9PHAE (TP6A_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC7_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 5.920e-51
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEV 270
            VLGKGIHITKRDMFYTDVKLF+EQ ESD+VLDDVACMVGCTRSCLNVVASDKGLVVGRVTF+EDGDLIDCTRMGVGGKAIPPYIDKIT +
Sbjct:  538 VLGKGIHITKRDMFYTDVKLFKEQSESDNVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFMEDGDLIDCTRMGVGGKAIPPYIDKITNI 627
[Close]
BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A812VHW3_SYMMI (SPO11-3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VHW3_SYMMI)

HSP 1 Score: 162 bits (410), Expect = 2.930e-47
Identity = 75/91 (82.42%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEVT 273
            VL KGIHITKRD+FYTDVKLF+EQGESD+VLDDVACMVGCTR+ L+VVASDKGLVVGR+ + E GD IDCT+MGVGGKAIPPYID+ITE+T
Sbjct:   67 VLTKGIHITKRDLFYTDVKLFKEQGESDAVLDDVACMVGCTRTSLHVVASDKGLVVGRIQYREAGDYIDCTKMGVGGKAIPPYIDRITEIT 157
[Close]
BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A4D9D7D3_9STRA (TP6A_N domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7D3_9STRA)

HSP 1 Score: 164 bits (414), Expect = 6.010e-46
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEV 270
            VL KGIHITKRDMFYTDVKLFR+Q +SD VLDDVACM+GCTRSCLNVVAS+KGLVVGRV F EDGD IDCTRMGVGGKAIPPY+DKI  +
Sbjct:  302 VLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIARI 391
[Close]
BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: W4HDB4_9STRA (TP6A_N domain-containing protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HDB4_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.070e-45
Identity = 70/91 (76.92%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEVT 273
            +L KGIH+TKRD+FYTDVKLF++Q ESD++LDDVACMVGCTRS L+VVAS+KG+VVGR+ F +DGDLIDCTRMGVGGKAIPPYID++T++T
Sbjct:  170 LLAKGIHVTKRDLFYTDVKLFKDQSESDTILDDVACMVGCTRSSLHVVASEKGVVVGRIAFRDDGDLIDCTRMGVGGKAIPPYIDRLTDIT 260
[Close]
BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A8J2SN07_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SN07_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.380e-44
Identity = 72/90 (80.00%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEV 270
            V  KGIH+TKRD+FYTDVKLF++Q ESD+VLDD ACM+GC RSCLNVVA+DKGLVVGR+ F EDGDLIDCTRMGV GKAIP YIDKITE+
Sbjct:  137 VTTKGIHVTKRDLFYTDVKLFKKQEESDAVLDDAACMIGCPRSCLNVVAADKGLVVGRLQFREDGDLIDCTRMGVTGKAIPAYIDKITEI 226
[Close]
BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A7S3H775_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H775_9STRA)

HSP 1 Score: 156 bits (394), Expect = 3.410e-44
Identity = 69/90 (76.67%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEV 270
            VL KGIHITKRD+FYTDVKLF++QGESD+VLDDVACM GCTR+ L+V+ASDKGLVVGR+ + E GDLIDCT+MG+ GKAIPPYID+IT++
Sbjct:  138 VLSKGIHITKRDLFYTDVKLFKDQGESDAVLDDVACMAGCTRTSLHVIASDKGLVVGRIQYREAGDLIDCTKMGIAGKAIPPYIDRITDI 227
[Close]
BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A7S3VDF1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VDF1_9STRA)

HSP 1 Score: 156 bits (395), Expect = 5.010e-44
Identity = 74/90 (82.22%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEV 270
            VL K IHITKRD+FYTDVKLF +Q ESD VLDD+A M+GCTRS L+VVASDKGLVVGR++F EDGDLIDCTRMGVGGKAIPPYIDKITE+
Sbjct:  176 VLRKRIHITKRDLFYTDVKLFVDQSESDGVLDDIATMIGCTRSNLHVVASDKGLVVGRISFREDGDLIDCTRMGVGGKAIPPYIDKITEI 265
[Close]
BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A1Z5JKS0_FISSO (Meiotic recombination protein SPO11 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKS0_FISSO)

HSP 1 Score: 155 bits (391), Expect = 1.090e-43
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEVT 273
            VL K IHITKRD+FYTDVKLF +Q ESD VLDDVA MVGCTRS LNVVASDKGLVVGRV F+EDGD IDCTRMGVGGKAIPPYIDKI  +T
Sbjct:  158 VLMKRIHITKRDLFYTDVKLFVDQAESDGVLDDVATMVGCTRSNLNVVASDKGLVVGRVQFIEDGDPIDCTRMGVGGKAIPPYIDKIENIT 248
[Close]
BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A6A0AIC7_HAELA (DNA topoisomerase 6 subunit A (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0AIC7_HAELA)

HSP 1 Score: 147 bits (372), Expect = 4.970e-43
Identity = 65/89 (73.03%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:    7 GKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEVT 273
             K IH+TKRD+FYTDVKLF EQG+SD++L+D+ACM+GCTRS L+VVAS+KG+VVGR+ +LEDGDLIDC RMGVGGKAIPP +DK+T +T
Sbjct:   44 AKRIHVTKRDLFYTDVKLFEEQGQSDTILEDLACMLGCTRSSLHVVASEKGVVVGRLQYLEDGDLIDCCRMGVGGKAIPPNVDKVTGMT 132
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY71_ECTSI1.220e-5193.33DNA topoisomerase VI subunit A n=1 Tax=Ectocarpus ... [more]
A0A6H5KKC7_9PHAE5.920e-5193.33TP6A_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A812VHW3_SYMMI2.930e-4782.42SPO11-3 protein n=1 Tax=Symbiodinium microadriatic... [more]
A0A4D9D7D3_9STRA6.010e-4684.44TP6A_N domain-containing protein n=2 Tax=Monodopsi... [more]
W4HDB4_9STRA1.070e-4576.92TP6A_N domain-containing protein n=11 Tax=Aphanomy... [more]
A0A8J2SN07_9STRA2.380e-4480.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3H775_9STRA3.410e-4476.67Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3VDF1_9STRA5.010e-4482.22Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5JKS0_FISSO1.090e-4383.52Meiotic recombination protein SPO11 n=2 Tax=Fistul... [more]
A0A6A0AIC7_HAELA4.970e-4373.03DNA topoisomerase 6 subunit A (Fragment) n=1 Tax=H... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104745contigF-distichus_contig104745:207..1138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.0
Seed ortholog evalue2.5e-43
Seed eggNOG ortholog2880.D7FY71
Preferred nameTOP6A
KEGG koko:K03166,ko:K10878
KEGG Pathwayko04113,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000706,GO:0000729,GO:0001708,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003918,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0008544,GO:0009888,GO:0009913,GO:0009957,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0016889,GO:0016894,GO:0017111,GO:0022402,GO:0022414,GO:0030154,GO:0030855,GO:0031974,GO:0031981,GO:0032502,GO:0033554,GO:0034641,GO:0035825,GO:0042138,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045165,GO:0046483,GO:0048285,GO:0048856,GO:0048869,GO:0050896,GO:0051321,GO:0051716,GO:0060429,GO:0061505,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.DNA topoisomerase VI subunit A
EggNOG OGsCOG1697@1,KOG2795@2759
EC5.99.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928969.174761-CDS-F-distichus_contig104745:206..2891622928969.174761-CDS-F-distichus_contig104745:206..289Fucus distichus monoicousCDSF-distichus_contig104745 207..289 -
1690885085.8558815-CDS-F-distichus_contig104745:206..2891690885085.8558815-CDS-F-distichus_contig104745:206..289Fucus distichus monoicousCDSF-distichus_contig104745 207..289 -
1622928969.1977262-CDS-F-distichus_contig104745:945..11381622928969.1977262-CDS-F-distichus_contig104745:945..1138Fucus distichus monoicousCDSF-distichus_contig104745 946..1138 -
1690885085.868403-CDS-F-distichus_contig104745:945..11381690885085.868403-CDS-F-distichus_contig104745:945..1138Fucus distichus monoicousCDSF-distichus_contig104745 946..1138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104745.420.1prot_F-distichus_contig104745.420.1Fucus distichus monoicouspolypeptideF-distichus_contig104745 207..1138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104745.420.1

>prot_F-distichus_contig104745.420.1 ID=prot_F-distichus_contig104745.420.1|Name=mRNA_F-distichus_contig104745.420.1|organism=Fucus distichus monoicous|type=polypeptide|length=92bp
VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVAS
DKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEVT*
back to top

mRNA from alignment at F-distichus_contig104745:207..1138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104745.420.1 ID=mRNA_F-distichus_contig104745.420.1|Name=mRNA_F-distichus_contig104745.420.1|organism=Fucus distichus monoicous|type=mRNA|length=932bp|location=Sequence derived from alignment at F-distichus_contig104745:207..1138- (Fucus distichus monoicous)
GTTTTGGGAAAGGGTATCCACATCACGAAGCGTGACATGTTCTACACGGA
CGTGAAGCTGTTCCGTGAGCAGGGGGAGAGTGACAGCGTGCTCGACGACG
TGGCTTGCATGGTGGGCTGCACACGTTCGTGCTTGAACGTCGTCGCTTCC
GACAAGGGCCTCGTGGTCGGACGGGTGACTTTCCTCGAGGACGGTAAGTT
AGTTAAACACATTGATGAAGAGGGTTCCTGGCGGTTCTTGGTCTTATGTT
CGATTATGATCGGGATTTGGATTTGGATTATGTATATTTCATCCTCCCAT
AATTTGTTTTCGGTTTTCTGGTTTTCGGTTTCGGTTTCGGTTTCGGTTTC
GGTTTCGGTTTTTTATTTGGTTTTGTTTGAAGAAGCCTATTTGTTTTTGG
CGAGAGTTTCCAACGTGTCCTGTACAGTCATTATATTTTACTGGTAAGTC
TTTTCGTATGTCTCTCTCTCTTTTCGGGGCGTGAATGCCTAACTCTGCTC
GATAAGATCGAATGTTGGACGAAATTTCGGGCGTTTCATTATAACCGTTT
CTATTCACCAATAAGTGAAAAATGCGAACCTATTGTTTTGTACCAGGTAG
GCTCTTATGCAATTTTCCTTTGAAACCGTACTGTATTTTTTTGTTTCATT
TATTGTCGAAACGGAACATAGGGATGTTGAACGTCCCCGCCCACAGCCAA
GCCCATCGCTTCTATTTTTTTCTCTCAACTGATATCTCTTTTGAGATTCT
GCTCTCACATAAGCTTCATACTAAGCGTACAAAGTAGCCCGAAACACCTC
GCGGCGCCATCCCTCATCCCCGATCCCCGATCCCCGCCCGCCTCTTCAGG
CGACCTAATCGACTGCACCCGCATGGGCGTGGGAGGTAAAGCAATCCCAC
CCTACATTGACAAGATCACGGAGGTCACGTGA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig104745:207..1138-

>mRNA_F-distichus_contig104745.420.1 ID=mRNA_F-distichus_contig104745.420.1|Name=mRNA_F-distichus_contig104745.420.1|organism=Fucus distichus monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at F-distichus_contig104745:207..1138- (Fucus distichus monoicous)
GTTTTGGGAAAGGGTATCCACATCACGAAGCGTGACATGTTCTACACGGA
CGTGAAGCTGTTCCGTGAGCAGGGGGAGAGTGACAGCGTGCTCGACGACG
TGGCTTGCATGGTGGGCTGCACACGTTCGTGCTTGAACGTCGTCGCTTCC
GACAAGGGCCTCGTGGTCGGACGGGTGACTTTCCTCGAGGACGGTTTTGG
GAAAGGGTATCCACATCACGAAGCGTGACATGTTCTACACGGACGTGAAG
CTGTTCCGTGAGCAGGGGGAGAGTGACAGCGTGCTCGACGACGTGGCTTG
CATGGTGGGCTGCACACGTTCGTGCTTGAACGTCGTCGCTTCCGACAAGG
GCCTCGTGGTCGGACGGGTGACTTTCCTCGAGGACGGCGACCTAATCGAC
TGCACCCGCATGGGCGTGGGAGGTAAAGCAATCCCACCCTACATTGACAA
GATCACGGAGGTCACGTGAGCGACCTAATCGACTGCACCCGCATGGGCGT
GGGAGGTAAAGCAATCCCACCCTACATTGACAAGATCACGGAGGTCACGT
GA
back to top