prot_F-distichus_contig104745.420.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-distichus_contig104745.420.1
Unique Name	prot_F-distichus_contig104745.420.1
Type	polypeptide
Organism	Fucus distichus monoicous (Fucus distichus monoicous)
Sequence length	92

Homology

[Close]

BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: D7FY71_ECTSI (DNA topoisomerase VI subunit A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY71_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.220e-51
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 0

Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEV 90
            VLGKGIHITKRDMFYTDVKLF+EQ ESD+VLDDVACMVGCTRSCLNVVASDKGLVVGRVTF+EDGDLIDCTRMGVGGKAIPPYIDKIT +
Sbjct:  368 VLGKGIHITKRDMFYTDVKLFKEQSESDNVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFMEDGDLIDCTRMGVGGKAIPPYIDKITNI 457

[Close]

BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A6H5KKC7_9PHAE (TP6A_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC7_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 5.920e-51
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 0

Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEV 90
            VLGKGIHITKRDMFYTDVKLF+EQ ESD+VLDDVACMVGCTRSCLNVVASDKGLVVGRVTF+EDGDLIDCTRMGVGGKAIPPYIDKIT +
Sbjct:  538 VLGKGIHITKRDMFYTDVKLFKEQSESDNVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFMEDGDLIDCTRMGVGGKAIPPYIDKITNI 627

[Close]

BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A812VHW3_SYMMI (SPO11-3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VHW3_SYMMI)

HSP 1 Score: 162 bits (410), Expect = 2.930e-47
Identity = 75/91 (82.42%), Postives = 85/91 (93.41%), Query Frame = 0

Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEVT 91
            VL KGIHITKRD+FYTDVKLF+EQGESD+VLDDVACMVGCTR+ L+VVASDKGLVVGR+ + E GD IDCT+MGVGGKAIPPYID+ITE+T
Sbjct:   67 VLTKGIHITKRDLFYTDVKLFKEQGESDAVLDDVACMVGCTRTSLHVVASDKGLVVGRIQYREAGDYIDCTKMGVGGKAIPPYIDRITEIT 157

[Close]

BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A4D9D7D3_9STRA (TP6A_N domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7D3_9STRA)

HSP 1 Score: 164 bits (414), Expect = 6.010e-46
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 0

Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEV 90
            VL KGIHITKRDMFYTDVKLFR+Q +SD VLDDVACM+GCTRSCLNVVAS+KGLVVGRV F EDGD IDCTRMGVGGKAIPPY+DKI  +
Sbjct:  302 VLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIARI 391

[Close]

BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: W4HDB4_9STRA (TP6A_N domain-containing protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HDB4_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.070e-45
Identity = 70/91 (76.92%), Postives = 86/91 (94.51%), Query Frame = 0

Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEVT 91
            +L KGIH+TKRD+FYTDVKLF++Q ESD++LDDVACMVGCTRS L+VVAS+KG+VVGR+ F +DGDLIDCTRMGVGGKAIPPYID++T++T
Sbjct:  170 LLAKGIHVTKRDLFYTDVKLFKDQSESDTILDDVACMVGCTRSSLHVVASEKGVVVGRIAFRDDGDLIDCTRMGVGGKAIPPYIDRLTDIT 260

[Close]

BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A8J2SN07_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SN07_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.380e-44
Identity = 72/90 (80.00%), Postives = 81/90 (90.00%), Query Frame = 0

Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEV 90
            V  KGIH+TKRD+FYTDVKLF++Q ESD+VLDD ACM+GC RSCLNVVA+DKGLVVGR+ F EDGDLIDCTRMGV GKAIP YIDKITE+
Sbjct:  137 VTTKGIHVTKRDLFYTDVKLFKKQEESDAVLDDAACMIGCPRSCLNVVAADKGLVVGRLQFREDGDLIDCTRMGVTGKAIPAYIDKITEI 226

[Close]

BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A7S3H775_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H775_9STRA)

HSP 1 Score: 156 bits (394), Expect = 3.410e-44
Identity = 69/90 (76.67%), Postives = 83/90 (92.22%), Query Frame = 0

Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEV 90
            VL KGIHITKRD+FYTDVKLF++QGESD+VLDDVACM GCTR+ L+V+ASDKGLVVGR+ + E GDLIDCT+MG+ GKAIPPYID+IT++
Sbjct:  138 VLSKGIHITKRDLFYTDVKLFKDQGESDAVLDDVACMAGCTRTSLHVIASDKGLVVGRIQYREAGDLIDCTKMGIAGKAIPPYIDRITDI 227

[Close]

BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A7S3VDF1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VDF1_9STRA)

HSP 1 Score: 156 bits (395), Expect = 5.010e-44
Identity = 74/90 (82.22%), Postives = 82/90 (91.11%), Query Frame = 0

Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEV 90
            VL K IHITKRD+FYTDVKLF +Q ESD VLDD+A M+GCTRS L+VVASDKGLVVGR++F EDGDLIDCTRMGVGGKAIPPYIDKITE+
Sbjct:  176 VLRKRIHITKRDLFYTDVKLFVDQSESDGVLDDIATMIGCTRSNLHVVASDKGLVVGRISFREDGDLIDCTRMGVGGKAIPPYIDKITEI 265

[Close]

BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A1Z5JKS0_FISSO (Meiotic recombination protein SPO11 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKS0_FISSO)

HSP 1 Score: 155 bits (391), Expect = 1.090e-43
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 0

Query:    1 VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEVT 91
            VL K IHITKRD+FYTDVKLF +Q ESD VLDDVA MVGCTRS LNVVASDKGLVVGRV F+EDGD IDCTRMGVGGKAIPPYIDKI  +T
Sbjct:  158 VLMKRIHITKRDLFYTDVKLFVDQAESDGVLDDVATMVGCTRSNLNVVASDKGLVVGRVQFIEDGDPIDCTRMGVGGKAIPPYIDKIENIT 248

[Close]

BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Match: A0A6A0AIC7_HAELA (DNA topoisomerase 6 subunit A (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0AIC7_HAELA)

HSP 1 Score: 147 bits (372), Expect = 4.970e-43
Identity = 65/89 (73.03%), Postives = 81/89 (91.01%), Query Frame = 0

Query:    3 GKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEVT 91
             K IH+TKRD+FYTDVKLF EQG+SD++L+D+ACM+GCTRS L+VVAS+KG+VVGR+ +LEDGDLIDC RMGVGGKAIPP +DK+T +T
Sbjct:   44 AKRIHVTKRDLFYTDVKLFEEQGQSDTILEDLACMLGCTRSSLHVVASEKGVVVGRLQYLEDGDLIDCCRMGVGGKAIPPNVDKVTGMT 132

The following BLAST results are available for this feature:

BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot

BLAST of mRNA_F-distichus_contig104745.420.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FY71_ECTSI	1.220e-51	93.33	DNA topoisomerase VI subunit A n=1 Tax=Ectocarpus ...	[more]
A0A6H5KKC7_9PHAE	5.920e-51	93.33	TP6A_N domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A812VHW3_SYMMI	2.930e-47	82.42	SPO11-3 protein n=1 Tax=Symbiodinium microadriatic...	[more]
A0A4D9D7D3_9STRA	6.010e-46	84.44	TP6A_N domain-containing protein n=2 Tax=Monodopsi...	[more]
W4HDB4_9STRA	1.070e-45	76.92	TP6A_N domain-containing protein n=11 Tax=Aphanomy...	[more]
A0A8J2SN07_9STRA	2.380e-44	80.00	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A7S3H775_9STRA	3.410e-44	76.67	Hypothetical protein n=1 Tax=Spumella elongata Tax...	[more]
A0A7S3VDF1_9STRA	5.010e-44	82.22	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]
A0A1Z5JKS0_FISSO	1.090e-43	83.52	Meiotic recombination protein SPO11 n=2 Tax=Fistul...	[more]
A0A6A0AIC7_HAELA	4.970e-43	73.03	DNA topoisomerase 6 subunit A (Fragment) n=1 Tax=H...	[more]

Pages

InterPro

Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002815	Spo11/DNA topoisomerase VI subunit A	PRINTS	PR01550	TOP6AFAMILY	coord: 10..21 score: 51.56 coord: 24..41 score: 35.07 coord: 42..57 score: 42.97
IPR002815	Spo11/DNA topoisomerase VI subunit A	PANTHER	PTHR10848	MEIOTIC RECOMBINATION PROTEIN SPO11	coord: 2..90
IPR013049	Spo11/DNA topoisomerase VI, subunit A, N-terminal	PFAM	PF04406	TP6A_N	coord: 2..47 e-value: 4.1E-17 score: 61.9
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..49 e-value: 2.3E-5 score: 26.1
None	No IPR available	PANTHER	PTHR10848:SF4	DNA TOPOISOMERASE 6 SUBUNIT A	coord: 2..90
IPR036078	Spo11/DNA topoisomerase VI subunit A superfamily	SUPERFAMILY	56726	DNA topoisomerase IV, alpha subunit	coord: 3..87

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002815	Spo11/DNA topoisomerase VI subunit A	PRINTS	PR01550	TOP6AFAMILY	coord: 10..21 score: 51.56 coord: 24..41 score: 35.07 coord: 42..57 score: 42.97
IPR002815	Spo11/DNA topoisomerase VI subunit A	PANTHER	PTHR10848	MEIOTIC RECOMBINATION PROTEIN SPO11	coord: 2..90
IPR013049	Spo11/DNA topoisomerase VI, subunit A, N-terminal	PFAM	PF04406	TP6A_N	coord: 2..47 e-value: 4.1E-17 score: 61.9
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..49 e-value: 2.3E-5 score: 26.1
None	No IPR available	PANTHER	PTHR10848:SF4	DNA TOPOISOMERASE 6 SUBUNIT A	coord: 2..90
IPR036078	Spo11/DNA topoisomerase VI subunit A superfamily	SUPERFAMILY	56726	DNA topoisomerase IV, alpha subunit	coord: 3..87

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-distichus_contig104745	contig	F-distichus_contig104745:207..1138 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Fucus distichus monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-distichus_contig104745.420.1	mRNA_F-distichus_contig104745.420.1	Fucus distichus monoicous	mRNA	F-distichus_contig104745 207..1138 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-distichus_contig104745.420.1 ID=prot_F-distichus_contig104745.420.1|Name=mRNA_F-distichus_contig104745.420.1|organism=Fucus distichus monoicous|type=polypeptide|length=92bp
VLGKGIHITKRDMFYTDVKLFREQGESDSVLDDVACMVGCTRSCLNVVAS
DKGLVVGRVTFLEDGDLIDCTRMGVGGKAIPPYIDKITEVT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002815	Spo11/TopoVI_A
IPR013049	Spo11/TopoVI_A_N
IPR036388	WH-like_DNA-bd_sf
IPR036078	Spo11/TopoVI_A_sf