mRNA_F-distichus_contig10432.387.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10432.387.1
Unique NamemRNA_F-distichus_contig10432.387.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10432.387.1 vs. uniprot
Match: D7G0H5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H5_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 1.350e-58
Identity = 153/298 (51.34%), Postives = 174/298 (58.39%), Query Frame = 1 
Query:  217 AKQKHSVARVRVRVRSSVYVLVAYLNERGSLLLDEVVEAEKHRHGARAARVVGLMNESTGNPVDLNVPARRSLSSGDALVAVVA-----------------TMTSGGRGEVGFVASAESWSGKAPGRVGREDRPEVISRGHAQPVRDTSTRQRPKTSGDTPNPSRILAEDTERGGGRSPQQSDIDQLRDDVARRFFTERQAAGEGIGALRSPFRPHGSPPTTPVTSKRRGASPENSRVTSPRTASPRGVLKGPGRSTEGGGERKGE---SRPASPARSTRSAASGYTHFSCFSLRSHG 1050
            A Q   VARVRV VRSSVY++VA + + GS+LLD+V EAEK RHG  AA V GL NESTG+ VDL+VPA RS+SSGD+L A+V                   + +GG GE G   SA    G+AP R                   D S R R    G  P+P R+   D E  GG      DIDQLRDDVARR + ER  AG G  A  SP RP GSP  TPVT   RGASPE+SR TSPR+ASPRG  KGPGRS+  G  R G    SRP SP RS  SAASGYTH S FS+RS G
Sbjct: 1449 ASQGPEVARVRVSVRSSVYLIVAEVEKAGSMLLDQVSEAEKLRHGQNAATVTGLTNESTGDTVDLDVPAERSISSGDSLTAIVVGWSPTTSPPGARTKQSRRLGAGGEGESGGATSAR---GRAPQRQHHRH--------------DGSPRSR---EGSRPSPLRLEFNDNEGRGG------DIDQLRDDVARRLYKERLLAGRGAAAASSPTRPIGSPAITPVTGGGRGASPEHSRPTSPRSASPRGATKGPGRSSPRGSVRDGGGGGSRPGSPTRSVCSAASGYTHCSGFSVRSRG 1720
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BLAST of mRNA_F-distichus_contig10432.387.1 vs. uniprot
Match: A0A6H5L6G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6G9_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.160e-53
Identity = 146/297 (49.16%), Postives = 171/297 (57.58%), Query Frame = 1 
Query:  217 AKQKHSVARVRVRVRSSVYVLVAYLNERGSLLLDEVVEAEKHRHGARAARVVGLMNESTGNPVDLNVPARRSLSSGDALVAVVATMT----------------SGGRGEVGFVASAESWSGKAPGRVGREDRPEVISRGHAQPVRDTSTRQRPKTSGDTPNPSRILAEDTERGGGRSPQQSDIDQLRDDVARRFFTERQAAGEGIGALRSPFRPHGSPPTTPVTSKRRGASPENSRVTSPRTASPRGVLKGPGRSTEGGGERKGE---SRPASPARSTRSAASGYTHFSCFSLRSHG 1050
            A Q   VARVRV VRSSVY++VA + + GS+LLD+V EAEK RHG  AA V GLMNESTG+ VDL +PA RS+SSGD+L+A+VA  +                +GG GE G   SA    G+ P R               Q  R   +R R    G  P+  R+   D E  GG      DID+LRDDVARR + ER  AG G  A  SP RP GSP  TP+T   RGASPE+SR TSPR+A   G    PGRS+  G  R G    SRP SPARS  SAASGYTH S FS+RS G
Sbjct: 1488 APQGPEVARVRVSVRSSVYLIVAEVEKDGSILLDQVSEAEKLRHGQNAATVTGLMNESTGDTVDLELPAERSISSGDSLIAIVAGWSPTTSPGARIKQSRRRGAGGEGESGGATSAR---GRTPQR---------------QHHRHDGSRSR---EGSRPSLLRLELNDNEGRGG------DIDELRDDVARRLYKERLVAGRGAAAASSPTRPIGSPAITPITGGGRGASPEHSRPTSPRSAXXXGATNRPGRSSPRGSVRDGGGRGSRPGSPARSVCSAASGYTHCSGFSVRSRG 1757
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10432.387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0H5_ECTSI1.350e-5851.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6G9_9PHAE1.160e-5349.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10432contigF-distichus_contig10432:36..2197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_003360.1
Exons5
Model size1050
Cds size1032
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10432.387.1prot_F-distichus_contig10432.387.1Fucus distichus monoicouspolypeptideF-distichus_contig10432 36..2179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928962.6377878-CDS-F-distichus_contig10432:35..851622928962.6377878-CDS-F-distichus_contig10432:35..85Fucus distichus monoicousCDSF-distichus_contig10432 36..85 -
1690885083.9779332-CDS-F-distichus_contig10432:35..851690885083.9779332-CDS-F-distichus_contig10432:35..85Fucus distichus monoicousCDSF-distichus_contig10432 36..85 -
1622928962.6492662-CDS-F-distichus_contig10432:341..6311622928962.6492662-CDS-F-distichus_contig10432:341..631Fucus distichus monoicousCDSF-distichus_contig10432 342..631 -
1690885083.9881132-CDS-F-distichus_contig10432:341..6311690885083.9881132-CDS-F-distichus_contig10432:341..631Fucus distichus monoicousCDSF-distichus_contig10432 342..631 -
1622928962.6634264-CDS-F-distichus_contig10432:841..11231622928962.6634264-CDS-F-distichus_contig10432:841..1123Fucus distichus monoicousCDSF-distichus_contig10432 842..1123 -
1690885084.0016797-CDS-F-distichus_contig10432:841..11231690885084.0016797-CDS-F-distichus_contig10432:841..1123Fucus distichus monoicousCDSF-distichus_contig10432 842..1123 -
1622928962.6767387-CDS-F-distichus_contig10432:1502..16091622928962.6767387-CDS-F-distichus_contig10432:1502..1609Fucus distichus monoicousCDSF-distichus_contig10432 1503..1609 -
1690885084.011827-CDS-F-distichus_contig10432:1502..16091690885084.011827-CDS-F-distichus_contig10432:1502..1609Fucus distichus monoicousCDSF-distichus_contig10432 1503..1609 -
1622928962.6878107-CDS-F-distichus_contig10432:1876..21791622928962.6878107-CDS-F-distichus_contig10432:1876..2179Fucus distichus monoicousCDSF-distichus_contig10432 1877..2179 -
1690885084.0207646-CDS-F-distichus_contig10432:1876..21791690885084.0207646-CDS-F-distichus_contig10432:1876..2179Fucus distichus monoicousCDSF-distichus_contig10432 1877..2179 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928962.7467523-UTR-F-distichus_contig10432:2179..21971622928962.7467523-UTR-F-distichus_contig10432:2179..2197Fucus distichus monoicousUTRF-distichus_contig10432 2180..2197 -
1690885084.0314488-UTR-F-distichus_contig10432:2179..21971690885084.0314488-UTR-F-distichus_contig10432:2179..2197Fucus distichus monoicousUTRF-distichus_contig10432 2180..2197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10432.387.1

>prot_F-distichus_contig10432.387.1 ID=prot_F-distichus_contig10432.387.1|Name=mRNA_F-distichus_contig10432.387.1|organism=Fucus distichus monoicous|type=polypeptide|length=344bp
MAAVGSASAAATATATAAAAAAAAAAAATASITAASEGYRKGFPKGRAVA
NATEAPARSSPLTSAYAKQKHSVARVRVRVRSSVYVLVAYLNERGSLLLD
EVVEAEKHRHGARAARVVGLMNESTGNPVDLNVPARRSLSSGDALVAVVA
TMTSGGRGEVGFVASAESWSGKAPGRVGREDRPEVISRGHAQPVRDTSTR
QRPKTSGDTPNPSRILAEDTERGGGRSPQQSDIDQLRDDVARRFFTERQA
AGEGIGALRSPFRPHGSPPTTPVTSKRRGASPENSRVTSPRTASPRGVLK
GPGRSTEGGGERKGESRPASPARSTRSAASGYTHFSCFSLRSHG
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mRNA from alignment at F-distichus_contig10432:36..2197-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10432.387.1 ID=mRNA_F-distichus_contig10432.387.1|Name=mRNA_F-distichus_contig10432.387.1|organism=Fucus distichus monoicous|type=mRNA|length=2162bp|location=Sequence derived from alignment at F-distichus_contig10432:36..2197- (Fucus distichus monoicous)
AGAGCTGCCGCGAACGCGATGGCTGCTGTTGGTTCTGCTTCAGCTGCTGC
TACCGCTACCGCTACGGCTGCTGCCGCTGCTGCAGCAGCAGCGGCGGCGG
CAACAGCTTCGATCACGGCCGCCTCAGAGGGATACCGGAAAGGCTTCCCC
AAGGGACGGGCGGTGGCGAACGCGACTGAAGCGCCCGCTCGCTCGTCGCC
TCTGACTTCGGCCTATGCGAAGCAGAAGCATAGCGTTGCGAGGGTGCGAG
TGCGAGTCCGGTCGAGCGTGTACGTTCTCGTGGCGTACCTAAACGAGAGG
GGTTCACTTCTACTTGACGAGGTGAGGTTTGAAGCTGCTGCGCACGCCGG
TGAGAGCGACGGAAGAAGTCAACGTCACTTGATGGCGATGTTTTGCGTCG
AACAGACATCAAGAATTGTTTTGACTCTCTCGGCGCACGACTTTCCACCA
TCGCTTAAAACTCAGCAACGCGAGGAAGATTACTGACAGTCCCTTTAGAA
CTGGGTAAGTTGGTGTCTGCATAGTCCAATAAAGTGAAGTCATTTCGCCC
CACTTGACCCTGGTTTGTTACGCCGCTGTCCCTCAAAGGTCGTAGAGGCG
GAGAAGCACCGGCACGGGGCGAGAGCGGCGAGGGTAGTGGGTCTCATGAA
CGAGTCGACGGGAAACCCGGTAGATCTCAATGTTCCGGCGAGAAGGTGTG
TGCATCATCTCTATTTCGACACGCGTTCTCGATAGACACAATCGAACAGA
AACATCCTACCACCGCCCCCACGGCGTTGCTTATTGTCACTCTTCTCACG
GAAATGCAAGAGAGAGAATAGGACCGAAAACCCTTCGATCATTGCTGGCA
TCGATTGTTCCTCCCACGCAGCAAGCCTTATCTTCGCGATCCGCTGCGAC
TGTTAACATGTACCGTCAACTGACGAACTCGTCAGGCCCAACGGTGTCGT
GTCGATCAGTCCTCTTCCAGTCTCGGTATCGCTTGCTGTCAATACCGCAT
CATACCATGCCCGGCCCCAAAACTGATCACGACTCCGCCGCTAAAGCGTA
ACATGTCGCACGGATGTCCCTCAGATCGTTATCTTCTGGAGATGCCCTCG
TCGCCGTTGTCGCAACCATGACATCGGGCGGAAGGGGCGAAGTGGGTTTC
GTGGCGTCGGCAGAATCCTGGTCGGGTAAAGCTCCAGGAAGAGTGGGAAG
AGAAGACCGGCCAGAGGTGATCAGCAGGGGACACGCTCAGCCTGTCAGGG
ATACGTCCACTCGACAGCGACCAAAAACTTCAGGGGATACACCAAATCCC
TCTCGCATCTTGGCCGAGGATACCGAACGCGGCGGGGGTCGATCGCCCCA
ACAAAGGTGCACCACGAAATATCGCAGCCACTATAACATTGATGCCTACT
GGAAGCCGCTCCCAACGAGGAGTTCCATCGCGATCGGAAACCTTTCTCTC
AATGCCCGCAAGTCGATGAATGAATAGAGATGATACGGCACCGTGCTTTT
CAACCATATCATGCCCATTGATAGGTCCACCAAGTCGAAACCTTCAAGGT
GCATCGCGTCGCCCAGTGACATTGACCAGCTCCGGGATGACGTCGCCCGC
CGATTCTTCACCGAACGACAAGCAGCCGGAGAGGGAATTGGTGCTCTTCG
TTCTCCATTCAGGCCACACGGTTCGCCGCCGACCACGCCGGTGACCAGCA
AGAGAAGGGGTGCATCCCCGGAAAACTCGCGGGTTACCTCGCCAAGGACG
GCTTCGCCCCGTGGGGTGCTAAAGGGGCCTGGGAGATCGACAGAGGGAGG
AGGGGAAAGAAAGGGGGAATCAAGACCTGCTTCCCCGGCCCGAAGCACAC
GCAGTGGTGGGTCACGCGAGAAAATTTTGGTCGGGAGCTGAAGCACCACC
GTTGGCTGGAACTATCGAGAGGAATATATTTATTTCGTATGATGTTAAGC
CGCACCGCAGTCCCTGCCGTATCGCACGATTCCTGTGACCGTTGTTCTCG
AGAACCAAAAGCGAAGAGTGTTCATACCAGAACAAGGGAGATCTTTGACG
TGTCTGCCTGTGACCAGCGACTCTCTACAAACACATAACCTTGACGTGTT
GGTATTGTACAGCGGCGTCGGGGTACACCCACTTCAGTTGTTTCTCTCTG
CGAAGCCACGGT
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Coding sequence (CDS) from alignment at F-distichus_contig10432:36..2197-

>mRNA_F-distichus_contig10432.387.1 ID=mRNA_F-distichus_contig10432.387.1|Name=mRNA_F-distichus_contig10432.387.1|organism=Fucus distichus monoicous|type=CDS|length=2064bp|location=Sequence derived from alignment at F-distichus_contig10432:36..2197- (Fucus distichus monoicous)
ATGGCTGCTGTTGGTTCTGCTTCAGCTGCTGCTACCGCTACCGCTACGGC
TGCTGCCGCTGCTGCAGCAGCAGCGGCGGCGGCAACAGCTTCGATCACGG
CCGCCTCAGAGGGATACCGGAAAGGCTTCCCCAAGGGACGGGCGGTGGCG
AACGCGACTGAAGCGCCCGCTCGCTCGTCGCCTCTGACTTCGGCCTATGC
GAAGCAGAAGCATAGCGTTGCGAGGGTGCGAGTGCGAGTCCGGTCGAGCG
TGTACGTTCTCGTGGCGTACCTAAACGAGAGGGGTTCACTTCTACTTGAC
GAGATGGCTGCTGTTGGTTCTGCTTCAGCTGCTGCTACCGCTACCGCTAC
GGCTGCTGCCGCTGCTGCAGCAGCAGCGGCGGCGGCAACAGCTTCGATCA
CGGCCGCCTCAGAGGGATACCGGAAAGGCTTCCCCAAGGGACGGGCGGTG
GCGAACGCGACTGAAGCGCCCGCTCGCTCGTCGCCTCTGACTTCGGCCTA
TGCGAAGCAGAAGCATAGCGTTGCGAGGGTGCGAGTGCGAGTCCGGTCGA
GCGTGTACGTTCTCGTGGCGTACCTAAACGAGAGGGGTTCACTTCTACTT
GACGAGGTCGTAGAGGCGGAGAAGCACCGGCACGGGGCGAGAGCGGCGAG
GGTAGTGGGTCTCATGAACGAGTCGACGGGAAACCCGGTAGATCTCAATG
TTCCGGCGAGAAGGTCGTAGAGGCGGAGAAGCACCGGCACGGGGCGAGAG
CGGCGAGGGTAGTGGGTCTCATGAACGAGTCGACGGGAAACCCGGTAGAT
CTCAATGTTCCGGCGAGAAGATCGTTATCTTCTGGAGATGCCCTCGTCGC
CGTTGTCGCAACCATGACATCGGGCGGAAGGGGCGAAGTGGGTTTCGTGG
CGTCGGCAGAATCCTGGTCGGGTAAAGCTCCAGGAAGAGTGGGAAGAGAA
GACCGGCCAGAGGTGATCAGCAGGGGACACGCTCAGCCTGTCAGGGATAC
GTCCACTCGACAGCGACCAAAAACTTCAGGGGATACACCAAATCCCTCTC
GCATCTTGGCCGAGGATACCGAACGCGGCGGGGGTCGATCGCCCCAACAA
AGATCGTTATCTTCTGGAGATGCCCTCGTCGCCGTTGTCGCAACCATGAC
ATCGGGCGGAAGGGGCGAAGTGGGTTTCGTGGCGTCGGCAGAATCCTGGT
CGGGTAAAGCTCCAGGAAGAGTGGGAAGAGAAGACCGGCCAGAGGTGATC
AGCAGGGGACACGCTCAGCCTGTCAGGGATACGTCCACTCGACAGCGACC
AAAAACTTCAGGGGATACACCAAATCCCTCTCGCATCTTGGCCGAGGATA
CCGAACGCGGCGGGGGTCGATCGCCCCAACAAAGTGACATTGACCAGCTC
CGGGATGACGTCGCCCGCCGATTCTTCACCGAACGACAAGCAGCCGGAGA
GGGAATTGGTGCTCTTCGTTCTCCATTCAGGCCACACGGTTCGCCGCCGA
CCACGCCGGTGACCAGCAAGAGAAGGGGTGCATCCCCGGAAAACTCGCGG
GTTACCTCGCCAAGGACGGCTTCGCCCCGTGGGGTGCTAAAGGGGCCTGG
GAGATCGACAGAGGGAGGAGGGGAAAGAAAGGGGGAATCAAGACCTGCTT
CCCCGGCCCGAAGCACACGCAGTGTGACATTGACCAGCTCCGGGATGACG
TCGCCCGCCGATTCTTCACCGAACGACAAGCAGCCGGAGAGGGAATTGGT
GCTCTTCGTTCTCCATTCAGGCCACACGGTTCGCCGCCGACCACGCCGGT
GACCAGCAAGAGAAGGGGTGCATCCCCGGAAAACTCGCGGGTTACCTCGC
CAAGGACGGCTTCGCCCCGTGGGGTGCTAAAGGGGCCTGGGAGATCGACA
GAGGGAGGAGGGGAAAGAAAGGGGGAATCAAGACCTGCTTCCCCGGCCCG
AAGCACACGCAGTGCGGCGTCGGGGTACACCCACTTCAGTTGTTTCTCTC
TGCGAAGCCACGGTCGGCGTCGGGGTACACCCACTTCAGTTGTTTCTCTC
TGCGAAGCCACGGT
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