mRNA_F-distichus_contig104228.378.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104228.378.1
Unique NamemRNA_F-distichus_contig104228.378.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104228.378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104228contigF-distichus_contig104228:391..737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size319
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.485714-CDS-F-distichus_contig104228:390..5871622928961.485714-CDS-F-distichus_contig104228:390..587Fucus distichus monoicousCDSF-distichus_contig104228 391..587 -
1690885083.3944018-CDS-F-distichus_contig104228:390..5871690885083.3944018-CDS-F-distichus_contig104228:390..587Fucus distichus monoicousCDSF-distichus_contig104228 391..587 -
1622928961.5048432-CDS-F-distichus_contig104228:616..7371622928961.5048432-CDS-F-distichus_contig104228:616..737Fucus distichus monoicousCDSF-distichus_contig104228 617..737 -
1690885083.4041584-CDS-F-distichus_contig104228:616..7371690885083.4041584-CDS-F-distichus_contig104228:616..737Fucus distichus monoicousCDSF-distichus_contig104228 617..737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104228.378.1prot_F-distichus_contig104228.378.1Fucus distichus monoicouspolypeptideF-distichus_contig104228 391..737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104228.378.1

>prot_F-distichus_contig104228.378.1 ID=prot_F-distichus_contig104228.378.1|Name=mRNA_F-distichus_contig104228.378.1|organism=Fucus distichus monoicous|type=polypeptide|length=106bp
LSRRRWQRCAGLRTDAVWLTDQSFTAPGWRLKWRRRKQLQFDFRGIVLVE
YILFFYLVFGPGWTRFLPVVWHLWRIFRKHVIQKVGCTILKTLVIRVFRQ
LGKEG*
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mRNA from alignment at F-distichus_contig104228:391..737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104228.378.1 ID=mRNA_F-distichus_contig104228.378.1|Name=mRNA_F-distichus_contig104228.378.1|organism=Fucus distichus monoicous|type=mRNA|length=347bp|location=Sequence derived from alignment at F-distichus_contig104228:391..737- (Fucus distichus monoicous)
TTGTCTCGACGACGATGGCAACGTTGTGCCGGTTTAAGAACTGACGCTGT
GTGGTTGACAGATCAGTCTTTTACAGCACCAGGCTGGCGCTTAAAGTGGC
GACGCCGAAAACAGTTGCAATGTTCGGTTCTTTTTAACAGAACGTTTTAG
TTGATTTTCGTGGAATCGTTTTAGTCGAATATATCCTATTTTTTTACCTC
GTTTTTGGTCCAGGTTGGACACGTTTTCTTCCTGTAGTGTGGCATCTATG
GCGTATTTTTAGAAAACATGTTATTCAGAAAGTCGGTTGTACAATTTTGA
AGACACTTGTGATCAGAGTATTTCGCCAACTGGGAAAAGAGGGTTGA
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Coding sequence (CDS) from alignment at F-distichus_contig104228:391..737-

>mRNA_F-distichus_contig104228.378.1 ID=mRNA_F-distichus_contig104228.378.1|Name=mRNA_F-distichus_contig104228.378.1|organism=Fucus distichus monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at F-distichus_contig104228:391..737- (Fucus distichus monoicous)
TTGTCTCGACGACGATGGCAACGTTGTGCCGGTTTAAGAACTGACGCTGT
GTGGTTGACAGATCAGTCTTTTACAGCACCAGGCTGGCGCTTAAAGTGGC
GACGCCGAAAACAGTTGCAATTTGTCTCGACGACGATGGCAACGTTGTGC
CGGTTTAAGAACTGACGCTGTGTGGTTGACAGATCAGTCTTTTACAGCAC
CAGGCTGGCGCTTAAAGTGGCGACGCCGAAAACAGTTGCAATTTGATTTT
CGTGGAATCGTTTTAGTCGAATATATCCTATTTTTTTACCTCGTTTTTGG
TCCAGGTTGGACACGTTTTCTTCCTGTAGTGTGGCATCTATGGCGTATTT
TTAGAAAACATGTTATTCAGAAAGTCGGTTGTACAATTTTGAAGACACTT
GTGATCAGAGTATTTCGCCAACTGGGAAAAGAGGGTTGATTGATTTTCGT
GGAATCGTTTTAGTCGAATATATCCTATTTTTTTACCTCGTTTTTGGTCC
AGGTTGGACACGTTTTCTTCCTGTAGTGTGGCATCTATGGCGTATTTTTA
GAAAACATGTTATTCAGAAAGTCGGTTGTACAATTTTGAAGACACTTGTG
ATCAGAGTATTTCGCCAACTGGGAAAAGAGGGTTGA
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