mRNA_F-distichus_contig10335.295.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10335.295.1
Unique NamemRNA_F-distichus_contig10335.295.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10335.295.1 vs. uniprot
Match: D7FS12_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS12_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 6.850e-13
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   34 KRQTAQDVVAKLPLERLEGAFRKTLKNASAMLGVSTSTLKKLCRERGVSRWPYRQVISLDRKILSIEQKL 243
            KRQT++DV A+LPLE LE  +   L  A+  L VS + LKKLCR  GV RWP+RQV SLD+    +E K+
Sbjct:  464 KRQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLEDKI 533          
BLAST of mRNA_F-distichus_contig10335.295.1 vs. uniprot
Match: A0A6H5KE17_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE17_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 6.930e-13
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   34 KRQTAQDVVAKLPLERLEGAFRKTLKNASAMLGVSTSTLKKLCRERGVSRWPYRQVISLDRKILSIEQKL 243
            KRQT++DV A+LPLE LE  +   L  A+  L VS + LKKLCR  GV RWP+RQV SLD+    +E K+
Sbjct:  464 KRQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLEDKI 533          
BLAST of mRNA_F-distichus_contig10335.295.1 vs. uniprot
Match: A0A7S0M8M4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M8M4_9CRYP)

HSP 1 Score: 58.2 bits (139), Expect = 1.280e-8
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   55 VVAKLPLERLEGAFRKTLKNASAMLGVSTSTLKKLCRERGVSRWPYRQVISLDRKI 222
            ++AKLP ERL+       +  +  LG+  ++LKK+CR  G+SRWPYR++ SL RK+
Sbjct:   88 LLAKLPAERLQHYLHLPARQVALSLGICLTSLKKICRHHGISRWPYRRIKSLSRKM 143          
BLAST of mRNA_F-distichus_contig10335.295.1 vs. uniprot
Match: F2DK96_HORVV (Predicted protein n=3 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2DK96_HORVV)

HSP 1 Score: 59.7 bits (143), Expect = 1.480e-8
Identity = 25/70 (35.71%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   28 RTKRQTAQDVVAKLPLERLEGAFRKTLKNASAMLGVSTSTLKKLCRERGVSRWPYRQVISLDRKILSIEQ 237
            +TK++T +     + L  L+G F  +LK+A+  LGV  +T+K++CR+ G+SRWP+R++  ++R +  I +
Sbjct:  486 KTKKKTGRKAGRPISLNELQGYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKISKVNRALGKIRR 555          
BLAST of mRNA_F-distichus_contig10335.295.1 vs. uniprot
Match: A0A8K1C321_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C321_PYTOL)

HSP 1 Score: 58.9 bits (141), Expect = 1.760e-8
Identity = 24/54 (44.44%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   82 LEGAFRKTLKNASAMLGVSTSTLKKLCRERGVSRWPYRQVISLDRKILSIEQKL 243
            L+  F K L++A+   G+ T+ LKK+CR+ G++ WPYRQ+I L++ I S+EQ++
Sbjct:   84 LQEHFHKPLRDAAQHFGICTTLLKKICRKNGITSWPYRQIIGLEKSISSMEQQV 137          
BLAST of mRNA_F-distichus_contig10335.295.1 vs. uniprot
Match: A0A0Q3PUU3_BRADI (Uncharacterized protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3PUU3_BRADI)

HSP 1 Score: 58.5 bits (140), Expect = 3.790e-8
Identity = 27/78 (34.62%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    4 GSGKTGSDRTKRQTAQDVVAKLPLERLEGAFRKTLKNASAMLGVSTSTLKKLCRERGVSRWPYRQVISLDRKILSIEQ 237
            G G   S   K++T +     + L+ L+G F  +LK+A+  LGV  +T+K++CR+ G+SRWP+R++  ++R +  I +
Sbjct:  490 GVGDGVSQPEKKKTGRKAGKPVGLKELQGYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKISKVNRALSKIRR 567          
BLAST of mRNA_F-distichus_contig10335.295.1 vs. uniprot
Match: A0A4D8ZYZ6_SALSN (Uncharacterized protein n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZYZ6_SALSN)

HSP 1 Score: 57.8 bits (138), Expect = 7.100e-8
Identity = 26/70 (37.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   34 KRQTAQDVVAKLPLERLEGAFRKTLKNASAMLGVSTSTLKKLCRERGVSRWPYRQVISLDRKILSIEQKL 243
            KR T++  ++   L  L+  F ++LK+A++ LGV ++TLK++CR+ G++RWP+R++  +DR +  I+  L
Sbjct:  459 KRNTSEKNIS---LNVLQKYFSRSLKDAASSLGVCSTTLKRICRQHGIARWPFRKIKKVDRSLKKIQGML 525          
BLAST of mRNA_F-distichus_contig10335.295.1 vs. uniprot
Match: A0A6P8EGQ1_PUNGR (protein NLP9-like n=3 Tax=Punica granatum TaxID=22663 RepID=A0A6P8EGQ1_PUNGR)

HSP 1 Score: 57.8 bits (138), Expect = 7.150e-8
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    1 MGSGKTGSDRTKRQTAQDVVAKLPLERLEGAFRKTLKNASAMLGVSTSTLKKLCRERGVSRWPYRQVISLDRKILSIEQKL 243
            M SG       KR TA+  V+   L  L+  F  +LK+A+  +GV  +TLK++CR+ G+SRWP R++  ++R +  I+  L
Sbjct:  557 MASGSNRQQEKKRSTAEKTVS---LSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLRKIQTVL 634          
BLAST of mRNA_F-distichus_contig10335.295.1 vs. uniprot
Match: A0A3N7H6Q5_POPTR (Uncharacterized protein n=2 Tax=Populus trichocarpa TaxID=3694 RepID=A0A3N7H6Q5_POPTR)

HSP 1 Score: 57.0 bits (136), Expect = 1.300e-7
Identity = 28/79 (35.44%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 MGSGKTGSDRTKRQTAQDVVAKLPLERLEGAFRKTLKNASAMLGVSTSTLKKLCRERGVSRWPYRQVISLDRKILSIEQ 237
            +GS KTG    K++  +  +  + LE L   F  +LK+AS  LGV ++TLK++CR+ G+ RWP R++  +   +  ++Q
Sbjct:  210 LGSRKTG----KKRRTKTAIQTISLEVLRRYFAGSLKDASQSLGVCSTTLKRICRQHGIKRWPSRKINKVGHSLRKLQQ 284          
BLAST of mRNA_F-distichus_contig10335.295.1 vs. uniprot
Match: A0A0P0VEJ5_ORYSJ (Os02g0136000 protein n=11 Tax=Oryza TaxID=4527 RepID=A0A0P0VEJ5_ORYSJ)

HSP 1 Score: 56.6 bits (135), Expect = 1.810e-7
Identity = 26/72 (36.11%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    7 SGKTGSDRTKRQTAQDVVAKLPLERLEGAFRKTLKNASAMLGVSTSTLKKLCRERGVSRWPYRQVISLDRKI 222
            + + G ++TKR  A+  V    LE L+  F  +LK+A+  LGV  +T+K++CR+ G+ RWP+R++  ++R +
Sbjct:  477 TSQVGKNKTKRGKAEKSVT---LEELQKHFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSL 545          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10335.295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS12_ECTSI6.850e-1352.86Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5KE17_9PHAE6.930e-1352.86RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S0M8M4_9CRYP1.280e-844.64Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
F2DK96_HORVV1.480e-835.71Predicted protein n=3 Tax=Hordeum vulgare subsp. v... [more]
A0A8K1C321_PYTOL1.760e-844.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0Q3PUU3_BRADI3.790e-834.62Uncharacterized protein n=2 Tax=Brachypodium dista... [more]
A0A4D8ZYZ6_SALSN7.100e-837.14Uncharacterized protein n=2 Tax=Salvia splendens T... [more]
A0A6P8EGQ1_PUNGR7.150e-837.04protein NLP9-like n=3 Tax=Punica granatum TaxID=22... [more]
A0A3N7H6Q5_POPTR1.300e-735.44Uncharacterized protein n=2 Tax=Populus trichocarp... [more]
A0A0P0VEJ5_ORYSJ1.810e-736.11Os02g0136000 protein n=11 Tax=Oryza TaxID=4527 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10335contigF-distichus_contig10335:6375..6617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.8
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog15368.BRADI3G03170.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RWP-RK domain
EggNOG OGs2CMF0@1,2QQ6H@2759,37M05@33090,3GXRC@35493,3IFFY@38820,3KT8Q@4447
COG Functional cat.K
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.9633322-CDS-F-distichus_contig10335:6374..66171622928951.9633322-CDS-F-distichus_contig10335:6374..6617Fucus distichus monoicousCDSF-distichus_contig10335 6375..6617 -
1690885079.7905679-CDS-F-distichus_contig10335:6374..66171690885079.7905679-CDS-F-distichus_contig10335:6374..6617Fucus distichus monoicousCDSF-distichus_contig10335 6375..6617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10335.295.1prot_F-distichus_contig10335.295.1Fucus distichus monoicouspolypeptideF-distichus_contig10335 6375..6617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10335.295.1

>prot_F-distichus_contig10335.295.1 ID=prot_F-distichus_contig10335.295.1|Name=mRNA_F-distichus_contig10335.295.1|organism=Fucus distichus monoicous|type=polypeptide|length=81bp
MGSGKTGSDRTKRQTAQDVVAKLPLERLEGAFRKTLKNASAMLGVSTSTL
KKLCRERGVSRWPYRQVISLDRKILSIEQKL
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mRNA from alignment at F-distichus_contig10335:6375..6617-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10335.295.1 ID=mRNA_F-distichus_contig10335.295.1|Name=mRNA_F-distichus_contig10335.295.1|organism=Fucus distichus monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at F-distichus_contig10335:6375..6617- (Fucus distichus monoicous)
ATGGGCAGCGGCAAAACCGGCAGCGACCGTACGAAACGTCAAACCGCCCA AGATGTGGTCGCTAAGCTGCCGTTAGAACGATTGGAAGGTGCCTTCCGCA AAACGCTGAAAAATGCGTCAGCCATGCTCGGGGTGAGCACGTCCACACTA AAAAAGTTATGCCGAGAACGCGGGGTCAGCCGCTGGCCCTACCGTCAAGT GATAAGCCTGGATCGGAAGATCTTATCAATTGAGCAAAAACTC
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Coding sequence (CDS) from alignment at F-distichus_contig10335:6375..6617-

>mRNA_F-distichus_contig10335.295.1 ID=mRNA_F-distichus_contig10335.295.1|Name=mRNA_F-distichus_contig10335.295.1|organism=Fucus distichus monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at F-distichus_contig10335:6375..6617- (Fucus distichus monoicous)
ATGGGCAGCGGCAAAACCGGCAGCGACCGTACGAAACGTCAAACCGCCCA
AGATGTGGTCGCTAAGCTGCCGTTAGAACGATTGGAAGGTGCCTTCCGCA
AAACGCTGAAAAATGCGTCAGCCATGCTCGGGGTGAGCACGTCCACACTA
AAAAAGTTATGCCGAGAACGCGGGGTCAGCCGCTGGCCCTACCGTCAAGT
GATAAGCCTGGATCGGAAGATCTTATCAATTGAGCAAAAACTCATGGGCA
GCGGCAAAACCGGCAGCGACCGTACGAAACGTCAAACCGCCCAAGATGTG
GTCGCTAAGCTGCCGTTAGAACGATTGGAAGGTGCCTTCCGCAAAACGCT
GAAAAATGCGTCAGCCATGCTCGGGGTGAGCACGTCCACACTAAAAAAGT
TATGCCGAGAACGCGGGGTCAGCCGCTGGCCCTACCGTCAAGTGATAAGC
CTGGATCGGAAGATCTTATCAATTGAGCAAAAACTC
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