mRNA_F-distichus_contig102996.264.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102996.264.1
Unique NamemRNA_F-distichus_contig102996.264.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102996.264.1 vs. uniprot
Match: D7FK93_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK93_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.020e-25
Identity = 61/138 (44.20%), Postives = 78/138 (56.52%), Query Frame = 1 
Query:    1 EAVGIESLVLHAFLVEQDALGFHTVSQGKEGFLLFHVERSKHAAERLSR--------HPVGLPSQESKAPEAAMATIVDKKASCTNMDPKLVSDEGAHEDRRLAIEETGRRTGSFNTFMRYMDTEVASFYFVLVAPSL 390
            E  GIESL L AF+++ DALGFHTVS+ K G LLFH E+SK AA RLS+                           +  K      +D +L S+E  HED+RLA++ETGR TGSFNTF+RY++ E    Y V+  P L
Sbjct:  205 EETGIESLDLRAFMIDDDALGFHTVSEDKHGILLFHAEKSKAAAARLSKAVXXXXXXXXXXXXXXXXXXXXXXXXXVAGKDLLDLVLDVQLASEEDVHEDKRLAVQETGRETGSFNTFIRYLEKEGGMIYAVVAGPIL 342
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102996.264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK93_ECTSI1.020e-2544.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102996contigF-distichus_contig102996:308..1640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size399
Cds size399
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102996.264.1prot_F-distichus_contig102996.264.1Fucus distichus monoicouspolypeptideF-distichus_contig102996 308..1640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.894024-CDS-F-distichus_contig102996:307..4781622928946.894024-CDS-F-distichus_contig102996:307..478Fucus distichus monoicousCDSF-distichus_contig102996 308..478 -
1690885077.7291617-CDS-F-distichus_contig102996:307..4781690885077.7291617-CDS-F-distichus_contig102996:307..478Fucus distichus monoicousCDSF-distichus_contig102996 308..478 -
1622928946.964686-CDS-F-distichus_contig102996:725..8721622928946.964686-CDS-F-distichus_contig102996:725..872Fucus distichus monoicousCDSF-distichus_contig102996 726..872 -
1690885077.7407937-CDS-F-distichus_contig102996:725..8721690885077.7407937-CDS-F-distichus_contig102996:725..872Fucus distichus monoicousCDSF-distichus_contig102996 726..872 -
1622928946.9788063-CDS-F-distichus_contig102996:1559..16401622928946.9788063-CDS-F-distichus_contig102996:1559..1640Fucus distichus monoicousCDSF-distichus_contig102996 1560..1640 -
1690885077.7511795-CDS-F-distichus_contig102996:1559..16401690885077.7511795-CDS-F-distichus_contig102996:1559..1640Fucus distichus monoicousCDSF-distichus_contig102996 1560..1640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102996.264.1

>prot_F-distichus_contig102996.264.1 ID=prot_F-distichus_contig102996.264.1|Name=mRNA_F-distichus_contig102996.264.1|organism=Fucus distichus monoicous|type=polypeptide|length=133bp
EAVGIESLVLHAFLVEQDALGFHTVSQGKEGFLLFHVERSKHAAERLSRH
PVGLPSQESKAPEAAMATIVDKKASCTNMDPKLVSDEGAHEDRRLAIEET
GRRTGSFNTFMRYMDTEVASFYFVLVAPSLLR*
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mRNA from alignment at F-distichus_contig102996:308..1640-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102996.264.1 ID=mRNA_F-distichus_contig102996.264.1|Name=mRNA_F-distichus_contig102996.264.1|organism=Fucus distichus monoicous|type=mRNA|length=1333bp|location=Sequence derived from alignment at F-distichus_contig102996:308..1640- (Fucus distichus monoicous)
GAGGCTGTGGGGATCGAATCTCTCGTTCTGCATGCTTTTCTAGTGGAGCA
GGACGCCCTGGGTTTCCACACCGTGTCCCAGGTGAAGCACGAAATAGGAA
CGCGGACCGTAGCAGGCAATAATATACATATCACGTTGAGTTCCGGATTT
GAGACACGGGTAAGCGTCGTCATTTTTTGTTTTGCTCTGTTCTCGGGCCG
GATGTCTCCCTGAGGGCCGCGAGCAAGGCTACTGTTCTTGGCGGTTGCGT
ATTGAACGACTCTCACAGCAAACATTGAGGGGGGTGATCTTCCCCGAGGA
GATGGGAAATAAAGGGATGTTGAAACGGGGTCGCTTCGTGGTAGCCGTTG
GTGGCTGCTTCACTTCCCGCCTCCGAAATACCCTCGCGTATCTCCATATC
CTGTGACCAGGGAAGCGTCTGAAGTCCCGCACGCCGAATAGTGACACGAT
ACACGCTCGAGACTTTCTCTCAAGACTTGCGCGTTGGGCGTTGGTCGTTT
TTTGTATTATCCATTTGCCATGTTTTGTACTTATCCGTTGGTCATGTTTT
GTACTATCCGTTGGTCATGTTTTGTGCTATCCGTTGGTAATTTTTATTAT
TATCCGTTGGTCATGTTTTGTACTATCCGTTGGTCATGTTTTGTACTATC
CGTTGGTCGTTTTTTGTATTATCCGTTGGTCATGTTTAGTACTATCCGTT
AGTCGTTTTTTGTACTCCGTTGGTCATTTTGTTAACGACACCCCGAAACA
CTTACTCTTGACCGGCAGGGCAAGGAAGGCTTCTTGCTGTTCCACGTGGA
AAGGAGCAAGCACGCGGCGGAGCGACTGTCGAGGCACCCCGTCGGTCTTC
CCAGCCAGGAGTCTAAAGCACCGGAAGCTGCCATGGCCACCATCGTCGAC
AAGAAGGCGAGCTGCGTGCCCTCTGCCTGCCTCTAGCGTAGAGACCAACG
GATGTGCCTCCCGCCGTCTCTGTGAAATCGCGCATATCCTGGTTTTCGAT
GTAATTAGAGGCGTGTCTGGTTTGGGGGGGTGGACACCAGTTGTGCGACA
CGGGCTCTTTTCCGCGGCGTCTGCTCTCCGCATCCTCATGCCTCCGCGGT
ATGATCGGTGTGTACCGCGCCCGCATCCCGTGTTCGCCCTCCTTGCTCTC
AAGCCTCGGCAGACTAACATGGATCCAAAACTTGTGAGCGACGAGGGCGC
GCACGAGGACAGAAGGTTGGCGATAGAGGAGACCGGTAGGCGGACGGGCA
GCTTCAACACTTTCATGCGCTACATGGACACAGAGGTGGCGAGCTTCTAC
TTTGTTCTGGTTGCCCCTTCTCTTTTAAGGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig102996:308..1640-

>mRNA_F-distichus_contig102996.264.1 ID=mRNA_F-distichus_contig102996.264.1|Name=mRNA_F-distichus_contig102996.264.1|organism=Fucus distichus monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at F-distichus_contig102996:308..1640- (Fucus distichus monoicous)
GAGGCTGTGGGGATCGAATCTCTCGTTCTGCATGCTTTTCTAGTGGAGCA
GGACGCCCTGGGTTTCCACACCGTGTCCCAGGAGGCTGTGGGGATCGAAT
CTCTCGTTCTGCATGCTTTTCTAGTGGAGCAGGACGCCCTGGGTTTCCAC
ACCGTGTCCCAGGGCAAGGAAGGCTTCTTGCTGTTCCACGTGGAAAGGAG
CAAGCACGCGGCGGAGCGACTGTCGAGGCACCCCGTCGGTCTTCCCAGCC
AGGAGTCTAAAGCACCGGAAGCTGCCATGGCCACCATCGTCGACAAGAAG
GCGAGCTGCGGCAAGGAAGGCTTCTTGCTGTTCCACGTGGAAAGGAGCAA
GCACGCGGCGGAGCGACTGTCGAGGCACCCCGTCGGTCTTCCCAGCCAGG
AGTCTAAAGCACCGGAAGCTGCCATGGCCACCATCGTCGACAAGAAGGCG
AGCTGCACTAACATGGATCCAAAACTTGTGAGCGACGAGGGCGCGCACGA
GGACAGAAGGTTGGCGATAGAGGAGACCGGTAGGCGGACGGGCAGCTTCA
ACACTTTCATGCGCTACATGGACACAGAGGTGGCGAGCTTCTACTTTGTT
CTGGTTGCCCCTTCTCTTTTAAGGTGAACTAACATGGATCCAAAACTTGT
GAGCGACGAGGGCGCGCACGAGGACAGAAGGTTGGCGATAGAGGAGACCG
GTAGGCGGACGGGCAGCTTCAACACTTTCATGCGCTACATGGACACAGAG
GTGGCGAGCTTCTACTTTGTTCTGGTTGCCCCTTCTCTTTTAAGGTGA
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