mRNA_F-distichus_contig102674.234.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102674.234.1
Unique NamemRNA_F-distichus_contig102674.234.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig102674.234.1 vs. uniprot
Match: D7G867_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G867_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.640e-15
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 RNKVLKSPEVRDALCVVRAWQSSDYATFFRALREQRLMHRCLLSQYVGSMRHTAIK 168
            R +VL SPE+R AL VVRAW + DY TFFRA R+Q +MHRCL+SQYV  MR +AIK
Sbjct:  512 REEVLDSPEIRGALKVVRAWHAGDYVTFFRAFRQQGVMHRCLMSQYVKPMRDSAIK 567
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102674.234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G867_ECTSI1.640e-1566.07PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102674contigF-distichus_contig102674:897..1064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue4.7e-13
Seed eggNOG ortholog2880.D7G867
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.mRNA transport
EggNOG OGsCOG5079@1,KOG1860@2759
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.660464-CDS-F-distichus_contig102674:896..10641622928943.660464-CDS-F-distichus_contig102674:896..1064Fucus distichus monoicousCDSF-distichus_contig102674 897..1064 +
1690885076.3114748-CDS-F-distichus_contig102674:896..10641690885076.3114748-CDS-F-distichus_contig102674:896..1064Fucus distichus monoicousCDSF-distichus_contig102674 897..1064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102674.234.1prot_F-distichus_contig102674.234.1Fucus distichus monoicouspolypeptideF-distichus_contig102674 897..1064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102674.234.1

>prot_F-distichus_contig102674.234.1 ID=prot_F-distichus_contig102674.234.1|Name=mRNA_F-distichus_contig102674.234.1|organism=Fucus distichus monoicous|type=polypeptide|length=56bp
RNKVLKSPEVRDALCVVRAWQSSDYATFFRALREQRLMHRCLLSQYVGSM
RHTAIK
back to top

mRNA from alignment at F-distichus_contig102674:897..1064+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102674.234.1 ID=mRNA_F-distichus_contig102674.234.1|Name=mRNA_F-distichus_contig102674.234.1|organism=Fucus distichus monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at F-distichus_contig102674:897..1064+ (Fucus distichus monoicous)
CGTAACAAAGTGCTCAAATCCCCGGAGGTCCGAGATGCTCTTTGTGTGGT
ACGCGCTTGGCAATCGTCGGACTACGCCACATTCTTCCGGGCGCTGAGGG
AGCAGCGGCTCATGCACCGCTGCCTCTTATCCCAGTACGTGGGGTCTATG
CGGCACACGGCTATTAAG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig102674:897..1064+

>mRNA_F-distichus_contig102674.234.1 ID=mRNA_F-distichus_contig102674.234.1|Name=mRNA_F-distichus_contig102674.234.1|organism=Fucus distichus monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at F-distichus_contig102674:897..1064+ (Fucus distichus monoicous)
CGTAACAAAGTGCTCAAATCCCCGGAGGTCCGAGATGCTCTTTGTGTGGT
ACGCGCTTGGCAATCGTCGGACTACGCCACATTCTTCCGGGCGCTGAGGG
AGCAGCGGCTCATGCACCGCTGCCTCTTATCCCAGTACGTGGGGTCTATG
CGGCACACGGCTATTAAGCGTAACAAAGTGCTCAAATCCCCGGAGGTCCG
AGATGCTCTTTGTGTGGTACGCGCTTGGCAATCGTCGGACTACGCCACAT
TCTTCCGGGCGCTGAGGGAGCAGCGGCTCATGCACCGCTGCCTCTTATCC
CAGTACGTGGGGTCTATGCGGCACACGGCTATTAAG
back to top