mRNA_F-distichus_contig9974.19412.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9974.19412.1
Unique NamemRNA_F-distichus_contig9974.19412.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9974.19412.1 vs. uniprot
Match: A0A7M3R4U7_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3R4U7_SPIER)

HSP 1 Score: 57.0 bits (136), Expect = 4.960e-8
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 DVLQRTGCESIEATVRAMELLWSGALLRMGDHRLPNRVVSGDVENTGKRGPGG 159
            +VL+RTG  SI AT+R M+L WSG L+RM D RLP R+  GDV  TG R  GG
Sbjct:  521 EVLERTGILSIYATLRQMQLRWSGHLVRMDDERLPKRLFYGDVA-TGSRRQGG 572
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BLAST of mRNA_F-distichus_contig9974.19412.1 vs. uniprot
Match: A0A7M3RCC0_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3RCC0_SPIER)

HSP 1 Score: 57.0 bits (136), Expect = 4.980e-8
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 DVLQRTGCESIEATVRAMELLWSGALLRMGDHRLPNRVVSGDVENTGKRGPGG 159
            DVL+RTG  SI AT+R ++L WSG L+RM D RLP R+  GDV  TG R  GG
Sbjct:  821 DVLERTGILSIYATLRQIQLRWSGHLVRMDDERLPKRLFYGDVA-TGSRRQGG 872
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BLAST of mRNA_F-distichus_contig9974.19412.1 vs. uniprot
Match: A0A6P8U4Y6_GYMAC (LOW QUALITY PROTEIN: uncharacterized protein LOC117545945 n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8U4Y6_GYMAC)

HSP 1 Score: 51.2 bits (121), Expect = 5.450e-6
Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    1 DVLQRTGCESIEATVRAMELLWSGALLRMGDHRLPNRVVSGDVENTGKRGPGGKEKQ 171
            +VL +T C SIEAT+   +L W G ++RM  +RLP RV+ G + + G+R  GG++K+
Sbjct:  878 EVLSKTSCRSIEATITQHQLRWLGHVVRMPSNRLPRRVLYGQLHH-GRRSAGGQKKR 933
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BLAST of mRNA_F-distichus_contig9974.19412.1 vs. uniprot
Match: UPI000F66AD9C (uncharacterized protein LOC113809286 n=1 Tax=Penaeus vannamei TaxID=6689 RepID=UPI000F66AD9C)

HSP 1 Score: 48.5 bits (114), Expect = 2.400e-5
Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    7 LQRTGCESIEATVRAMELLWSGALLRMGDHRLPNRVVSGDVENTGKRGPGGKEKQ 171
            L R G  SI A +   +L W+G ++RM DHRLP R++SG+++  GKR  GG++++
Sbjct:   93 LTRAGLPSIYAILMQSQLRWAGHVVRMPDHRLPKRLLSGELQQ-GKRSNGGQKRR 146
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BLAST of mRNA_F-distichus_contig9974.19412.1 vs. uniprot
Match: A0A654GLT2_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GLT2_9CEST)

HSP 1 Score: 48.1 bits (113), Expect = 6.620e-5
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 DVLQRTGCESIEATVRAMELLWSGALLRMGDHRLPNRVVSGDVENTGKRGP 153
            +V+++TG  SI AT+R ++L WSG  +RM D RLP ++  GDV  TG R P
Sbjct:  366 EVVEQTGILSIYATLRQLQLCWSGNFVRMEDTRLPKQLFYGDVA-TGARRP 415
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9974.19412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7M3R4U7_SPIER4.960e-858.49Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A7M3RCC0_SPIER4.980e-858.49Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A6P8U4Y6_GYMAC5.450e-643.86LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
UPI000F66AD9C2.400e-543.64uncharacterized protein LOC113809286 n=1 Tax=Penae... [more]
A0A654GLT2_9CEST6.620e-549.02Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9974contigF-distichus_contig9974:4894..5064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.1735337-CDS-F-distichus_contig9974:4893..50641622931179.1735337-CDS-F-distichus_contig9974:4893..5064Fucus distichus monoicousCDSF-distichus_contig9974 4894..5064 +
1690886192.8612342-CDS-F-distichus_contig9974:4893..50641690886192.8612342-CDS-F-distichus_contig9974:4893..5064Fucus distichus monoicousCDSF-distichus_contig9974 4894..5064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9974.19412.1prot_F-distichus_contig9974.19412.1Fucus distichus monoicouspolypeptideF-distichus_contig9974 4894..5064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9974.19412.1

>prot_F-distichus_contig9974.19412.1 ID=prot_F-distichus_contig9974.19412.1|Name=mRNA_F-distichus_contig9974.19412.1|organism=Fucus distichus monoicous|type=polypeptide|length=57bp
DVLQRTGCESIEATVRAMELLWSGALLRMGDHRLPNRVVSGDVENTGKRG
PGGKEKQ
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mRNA from alignment at F-distichus_contig9974:4894..5064+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9974.19412.1 ID=mRNA_F-distichus_contig9974.19412.1|Name=mRNA_F-distichus_contig9974.19412.1|organism=Fucus distichus monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at F-distichus_contig9974:4894..5064+ (Fucus distichus monoicous)
GACGTCCTCCAGCGAACCGGTTGTGAGAGTATCGAAGCAACCGTGCGCGC
GATGGAGTTGTTGTGGTCCGGGGCGCTGCTCCGCATGGGTGACCACAGGT
TACCGAATAGGGTCGTGTCGGGAGATGTGGAGAACACGGGAAAACGTGGG
CCGGGAGGGAAGGAGAAACAA
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Coding sequence (CDS) from alignment at F-distichus_contig9974:4894..5064+

>mRNA_F-distichus_contig9974.19412.1 ID=mRNA_F-distichus_contig9974.19412.1|Name=mRNA_F-distichus_contig9974.19412.1|organism=Fucus distichus monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at F-distichus_contig9974:4894..5064+ (Fucus distichus monoicous)
GACGTCCTCCAGCGAACCGGTTGTGAGAGTATCGAAGCAACCGTGCGCGC
GATGGAGTTGTTGTGGTCCGGGGCGCTGCTCCGCATGGGTGACCACAGGT
TACCGAATAGGGTCGTGTCGGGAGATGTGGAGAACACGGGAAAACGTGGG
CCGGGAGGGAAGGAGAAACAAGACGTCCTCCAGCGAACCGGTTGTGAGAG
TATCGAAGCAACCGTGCGCGCGATGGAGTTGTTGTGGTCCGGGGCGCTGC
TCCGCATGGGTGACCACAGGTTACCGAATAGGGTCGTGTCGGGAGATGTG
GAGAACACGGGAAAACGTGGGCCGGGAGGGAAGGAGAAACAA
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