mRNA_F-distichus_contig99118.19353.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99118.19353.1
Unique NamemRNA_F-distichus_contig99118.19353.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig99118.19353.1 vs. uniprot
Match: A0A6H5L5I3_9PHAE (CBFD_NFYB_HMF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5I3_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 6.600e-41
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:    1 TGQECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYVEPLKGYLAKYRESVKLEKPDRKGKR 216
            T QECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYV+PLK YL+KYRESVKLEKPDRKGKR
Sbjct:   45 TVQECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYVDPLKIYLSKYRESVKLEKPDRKGKR 116
[Close]
BLAST of mRNA_F-distichus_contig99118.19353.1 vs. uniprot
Match: A0A835YU51_9STRA (Nuclear transcription factor Y subunit B4 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU51_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.640e-36
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1 
Query:    1 TGQECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYVEPLKGYLAKYRESVKLEKPDRK 207
            T QECVSEFICFITSEASDKC+QEKRKTINGED+LWAMSTLGFDKYVEPLK YLAKYRESVK EKP++K
Sbjct:   46 TVQECVSEFICFITSEASDKCQQEKRKTINGEDILWAMSTLGFDKYVEPLKLYLAKYRESVKGEKPEKK 114
[Close]
BLAST of mRNA_F-distichus_contig99118.19353.1 vs. uniprot
Match: A0A6U1F424_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U1F424_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.500e-34
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:    1 TGQECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYVEPLKGYLAKYRESVKLEKPDRK 207
            T QECVSEFI FITSEASDKC QEKRKTING+DLLWAMSTLGFDKYVEPLK YLAKYRE+V+ EKPD+K
Sbjct:   48 TLQECVSEFISFITSEASDKCMQEKRKTINGDDLLWAMSTLGFDKYVEPLKIYLAKYREAVRGEKPDKK 116
[Close]
BLAST of mRNA_F-distichus_contig99118.19353.1 vs. uniprot
Match: A0A7S0GKV9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKV9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 9.400e-34
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 TGQECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYVEPLKGYLAKYRESVKLEKPDRKG 210
            T QECVSEFI FITSEASDKC QEKRKTING+DLLWAMSTLGFDKYVEPLK YL KYRE+V+ +KPD KG
Sbjct:   80 TVQECVSEFISFITSEASDKCMQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLGKYREAVRGDKPDNKG 149
[Close]
BLAST of mRNA_F-distichus_contig99118.19353.1 vs. uniprot
Match: A0A448ZAW8_9STRA (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZAW8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.260e-33
Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 TGQECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYVEPLKGYLAKYRESVKLEKPDR 204
            T QECVSEFI FITSEASDKC QEKRKTING+DLLWAMSTLGFDKYVEPLK YL+KYRE+V+ +KPD+
Sbjct:   18 TVQECVSEFISFITSEASDKCLQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLSKYREAVRGDKPDK 85
[Close]
BLAST of mRNA_F-distichus_contig99118.19353.1 vs. uniprot
Match: A0A6U3SNW2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3SNW2_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.040e-33
Identity = 58/72 (80.56%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 TGQECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYVEPLKGYLAKYRESVKLEKPDRKGKR 216
            T QECVSEFI FITSEASDKC+QEKRKTING+DLLWAM+TLGFDKY++PLK YL+KYRES+K EKP++K KR
Sbjct:   52 TVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMNTLGFDKYMDPLKVYLSKYRESIKGEKPEKKLKR 123
[Close]
BLAST of mRNA_F-distichus_contig99118.19353.1 vs. uniprot
Match: M4C128_HYAAE (CBFD_NFYB_HMF domain-containing protein n=33 Tax=Oomycota TaxID=4762 RepID=M4C128_HYAAE)

HSP 1 Score: 119 bits (298), Expect = 3.130e-33
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 TGQECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYVEPLKGYLAKYRESVKLEKPDRK 207
            T QECVSEFI FITSEASDKC+QEKRKTING+D++WAMSTLGFD YVEPLK YL KYRESVK+EK D+K
Sbjct:   45 TVQECVSEFISFITSEASDKCQQEKRKTINGDDIIWAMSTLGFDSYVEPLKLYLQKYRESVKVEKNDKK 113
[Close]
BLAST of mRNA_F-distichus_contig99118.19353.1 vs. uniprot
Match: B8CEK6_THAPS (CBFD_NFYB_HMF domain-containing protein (Fragment) n=5 Tax=Bacillariophyta TaxID=2836 RepID=B8CEK6_THAPS)

HSP 1 Score: 118 bits (295), Expect = 5.270e-33
Identity = 56/68 (82.35%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 TGQECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYVEPLKGYLAKYRESVKLEKPDR 204
            T QECVSEFI FITSEASDKC QEKRKTING+DLLWAMSTLGFDKYVEPLK YL+KYRE+V+ +KP++
Sbjct:   33 TVQECVSEFISFITSEASDKCMQEKRKTINGDDLLWAMSTLGFDKYVEPLKVYLSKYREAVRGDKPEK 100
[Close]
BLAST of mRNA_F-distichus_contig99118.19353.1 vs. uniprot
Match: A0A7S2EHZ1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EHZ1_TRICV)

HSP 1 Score: 119 bits (297), Expect = 8.450e-33
Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 TGQECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYVEPLKGYLAKYRESVKLEKPDR 204
            T QECVSEFI FITSEASDKC QEKRKTING+DLLWAMSTLGFDKYVEPLK YLAKYRE+V+ +KP++
Sbjct:   54 TVQECVSEFISFITSEASDKCMQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLAKYREAVRGDKPEK 121
[Close]
BLAST of mRNA_F-distichus_contig99118.19353.1 vs. uniprot
Match: A0A1E7FRM2_9STRA (Histone-fold-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRM2_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.630e-32
Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 TGQECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYVEPLKGYLAKYRESVKLEKPDR 204
            T QECVSEFI FITSEASDKC QEKRKTING+DLLWAMSTLGFDKYVEPLK YL+KYRE+V+ +KPD+
Sbjct:   58 TVQECVSEFISFITSEASDKCLQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLSKYREAVRGDKPDK 125
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99118.19353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5I3_9PHAE6.600e-4194.44CBFD_NFYB_HMF domain-containing protein n=2 Tax=Ec... [more]
A0A835YU51_9STRA1.640e-3689.86Nuclear transcription factor Y subunit B4 (Fragmen... [more]
A0A6U1F424_9STRA1.500e-3486.96Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0GKV9_9STRA9.400e-3484.29Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A448ZAW8_9STRA2.260e-3383.82CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ps... [more]
A0A6U3SNW2_9STRA3.040e-3380.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
M4C128_HYAAE3.130e-3382.61CBFD_NFYB_HMF domain-containing protein n=33 Tax=O... [more]
B8CEK6_THAPS5.270e-3382.35CBFD_NFYB_HMF domain-containing protein (Fragment)... [more]
A0A7S2EHZ1_TRICV8.450e-3383.82Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A1E7FRM2_9STRA1.630e-3283.82Histone-fold-containing protein n=1 Tax=Fragilario... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99118contigF-distichus_contig99118:1..216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue6.5e-31
Seed eggNOG ortholog2880.D8LI33
Preferred nameNFYB
KEGG rclassRC00010,RC01783,RC03043
KEGG koko:K08065,ko:K08681,ko:K14799
KEGG ReactionR07456
KEGG Pathwayko00750,ko04612,ko05152,ko05166,map00750,map04612,map05152,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000976,GO:0000981,GO:0001067,GO:0001558,GO:0001654,GO:0001932,GO:0001934,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003712,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0006082,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006790,GO:0006807,GO:0007275,GO:0007399,GO:0007423,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009648,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010228,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0010720,GO:0010941,GO:0016070,GO:0016143,GO:0016602,GO:0018130,GO:0019216,GO:0019218,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019748,GO:0019757,GO:0019760,GO:0022008,GO:0022414,GO:0022603,GO:0022604,GO:0023051,GO:0023056,GO:0030154,GO:0030307,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0034097,GO:0034641,GO:0034645,GO:0034654,GO:0040008,GO:0042221,GO:0042325,GO:0042327,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043408,GO:0043410,GO:0043436,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0044877,GO:0045540,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045676,GO:0045678,GO:0045893,GO:0045927,GO:0045935,GO:0045937,GO:0046483,GO:0046532,GO:0046534,GO:0046890,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048571,GO:0048573,GO:0048574,GO:0048579,GO:0048580,GO:0048581,GO:0048583,GO:0048584,GO:0048585,GO:0048586,GO:0048608,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0050896,GO:0051093,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051510,GO:0051512,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060548,GO:0061458,GO:0062012,GO:0065007,GO:0070013,GO:0070491,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0080090,GO:0090181,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0106118,GO:0140110,GO:1901135,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901657,GO:1902531,GO:1902533,GO:1902680,GO:1902930,GO:1903506,GO:1903508,GO:1990823,GO:1990830,GO:1990837,GO:2000026,GO:2000027,GO:2000028,GO:2000112,GO:2000241,GO:2000242,GO:2001141
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG0869@2759
EC4.3.3.6
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03009
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.7371418-CDS-F-distichus_contig99118:0..2161622931172.7371418-CDS-F-distichus_contig99118:0..216Fucus distichus monoicousCDSF-distichus_contig99118 1..216 -
1690886189.8248978-CDS-F-distichus_contig99118:0..2161690886189.8248978-CDS-F-distichus_contig99118:0..216Fucus distichus monoicousCDSF-distichus_contig99118 1..216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99118.19353.1prot_F-distichus_contig99118.19353.1Fucus distichus monoicouspolypeptideF-distichus_contig99118 1..216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99118.19353.1

>prot_F-distichus_contig99118.19353.1 ID=prot_F-distichus_contig99118.19353.1|Name=mRNA_F-distichus_contig99118.19353.1|organism=Fucus distichus monoicous|type=polypeptide|length=72bp
TGQECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYVEPL
KGYLAKYRESVKLEKPDRKGKR
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mRNA from alignment at F-distichus_contig99118:1..216-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99118.19353.1 ID=mRNA_F-distichus_contig99118.19353.1|Name=mRNA_F-distichus_contig99118.19353.1|organism=Fucus distichus monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at F-distichus_contig99118:1..216- (Fucus distichus monoicous)
ACCGGTCAGGAGTGCGTGTCCGAATTCATCTGCTTCATCACCTCCGAGGC
GAGCGACAAGTGCAAGCAGGAGAAGCGGAAGACCATCAACGGCGAGGATC
TGCTGTGGGCCATGAGCACGCTCGGCTTCGACAAGTACGTGGAGCCGCTC
AAGGGATACCTCGCCAAGTACCGCGAGTCCGTCAAGCTCGAGAAGCCCGA
CAGAAAGGGCAAGCGG
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Coding sequence (CDS) from alignment at F-distichus_contig99118:1..216-

>mRNA_F-distichus_contig99118.19353.1 ID=mRNA_F-distichus_contig99118.19353.1|Name=mRNA_F-distichus_contig99118.19353.1|organism=Fucus distichus monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at F-distichus_contig99118:1..216- (Fucus distichus monoicous)
ACCGGTCAGGAGTGCGTGTCCGAATTCATCTGCTTCATCACCTCCGAGGC
GAGCGACAAGTGCAAGCAGGAGAAGCGGAAGACCATCAACGGCGAGGATC
TGCTGTGGGCCATGAGCACGCTCGGCTTCGACAAGTACGTGGAGCCGCTC
AAGGGATACCTCGCCAAGTACCGCGAGTCCGTCAAGCTCGAGAAGCCCGA
CAGAAAGGGCAAGCGGACCGGTCAGGAGTGCGTGTCCGAATTCATCTGCT
TCATCACCTCCGAGGCGAGCGACAAGTGCAAGCAGGAGAAGCGGAAGACC
ATCAACGGCGAGGATCTGCTGTGGGCCATGAGCACGCTCGGCTTCGACAA
GTACGTGGAGCCGCTCAAGGGATACCTCGCCAAGTACCGCGAGTCCGTCA
AGCTCGAGAAGCCCGACAGAAAGGGCAAGCGG
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