mRNA_F-distichus_contig98337.19272.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98337.19272.1
Unique NamemRNA_F-distichus_contig98337.19272.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig98337.19272.1 vs. uniprot
Match: D7FP74_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP74_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.070e-16
Identity = 210/308 (68.18%), Postives = 222/308 (72.08%), Query Frame = 1 
Query:    1 WLRLLLELAADTGDMALLSTLQSAGAEGSIVHLAVRGGLEMLVRDHFERGASVNQRDVNGDCPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETAAALLDGGAWVSPFCDVEGCSXXXXXXXXXXXXVVEVLAKCGADLDAATSTGGISLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGHLEATLVLLS-------IAPSTVSLRCGAEASXXXXXXXXXXXXIVTALLRHGADVNSSDCPGQPALHRAA 903
            WLRL LELAAD   + L+S L++AGA GS  HLAVR G  MLV D  +RG S + RD NGD PLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           AWVSPF D E CSXXXXXXXXXXXX     AK GAD+DAA STG   L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   I    V+LR G E S            +V  +LRHGADV+S+DCP QPALHRAA
Sbjct:   34 WLRLSLELAADNKHLELISRLENAGAVGSRFHLAVRQGNGMLVADTIKRGESPDARDGNGDAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVSPFLDSESCSXXXXXXXXXXXXXXXXXAKHGADMDAAASTGLTLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANHRNPIIENDVVNLRFGGEPSPLELAACHGHAHVVRTMLRHGADVDSTDCPYQPALHRAA 341
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98337.19272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP74_ECTSI1.070e-1668.18Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98337contigF-distichus_contig98337:765..2138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue2.6e-16
Seed eggNOG ortholog2880.D7FP74
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_000580.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1374
Cds size1374
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.004842-CDS-F-distichus_contig98337:764..21381622931163.004842-CDS-F-distichus_contig98337:764..2138Fucus distichus monoicousCDSF-distichus_contig98337 765..2138 -
1690886185.6223185-CDS-F-distichus_contig98337:764..21381690886185.6223185-CDS-F-distichus_contig98337:764..2138Fucus distichus monoicousCDSF-distichus_contig98337 765..2138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98337.19272.1prot_F-distichus_contig98337.19272.1Fucus distichus monoicouspolypeptideF-distichus_contig98337 765..2138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98337.19272.1

>prot_F-distichus_contig98337.19272.1 ID=prot_F-distichus_contig98337.19272.1|Name=mRNA_F-distichus_contig98337.19272.1|organism=Fucus distichus monoicous|type=polypeptide|length=458bp
WLRLLLELAADTGDMALLSTLQSAGAEGSIVHLAVRGGLEMLVRDHFERG
ASVNQRDVNGDCPLHLAASKGNERMVRVRLSCGADENAQDMKRRTPLHLA
ASHGHAETAAALLDGGAWVSPFCDVEGCSPLELAVHHGHLHVVEVLAKCG
ADLDAATSTGGISLQVAASRGMVGLIESLVRAGARPNVRDADGSTALHVA
AERGLCDVLRTLVTQGADPAQFNNAGRTPLSLAAGAGHLEATLVLLSIAP
STVSLRCGAEASPLELAAEAGHVAIVTALLRHGADVNSSDCPGQPALHRA
ADRDRVGCLRELIRYGANLDARDADAETALHHAATFDRAGAIEELARAGA
DIEAIGEEGYTPLHLACRFLKQNAVAALLRNGARVLTLDEYGYTPLHSAA
ANGAKAGTHAVVDLLLTWGADPYAVTAGGYTAADIIGHYEGGEELLVEDA
ERIRRMLL
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mRNA from alignment at F-distichus_contig98337:765..2138-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98337.19272.1 ID=mRNA_F-distichus_contig98337.19272.1|Name=mRNA_F-distichus_contig98337.19272.1|organism=Fucus distichus monoicous|type=mRNA|length=1374bp|location=Sequence derived from alignment at F-distichus_contig98337:765..2138- (Fucus distichus monoicous)
TGGCTGAGACTCTTGCTTGAGCTAGCTGCAGACACGGGCGACATGGCACT
CCTATCAACGCTTCAGAGCGCCGGCGCCGAGGGGAGCATCGTACACCTGG
CCGTAAGAGGCGGCCTCGAGATGCTCGTACGTGACCACTTCGAGCGCGGC
GCCTCTGTTAACCAGCGTGACGTCAACGGCGACTGTCCTCTTCATCTAGC
CGCATCCAAGGGTAATGAGCGGATGGTTCGGGTGCGCCTTTCGTGCGGGG
CAGACGAAAACGCACAGGACATGAAGCGCCGCACGCCGCTACACTTGGCG
GCTAGCCACGGCCACGCAGAGACGGCAGCAGCTCTTCTCGACGGAGGCGC
CTGGGTAAGTCCATTCTGCGACGTAGAAGGCTGCTCCCCGCTGGAGCTGG
CCGTGCACCACGGACACCTACACGTAGTAGAGGTGCTGGCAAAGTGTGGT
GCAGATTTGGATGCGGCCACTTCCACCGGAGGGATTTCCTTACAAGTAGC
CGCGAGTCGCGGGATGGTGGGTCTGATTGAATCTCTCGTGCGTGCTGGCG
CCCGCCCGAACGTCCGTGATGCCGACGGATCGACCGCTCTTCACGTTGCC
GCCGAGCGCGGCTTGTGTGACGTCCTCCGGACGCTGGTAACACAAGGAGC
CGACCCGGCCCAGTTCAACAACGCCGGTCGAACCCCGCTCTCCCTGGCCG
CCGGAGCGGGGCATCTTGAGGCAACTTTGGTGTTGCTGTCCATTGCGCCC
TCCACCGTCTCGCTTCGGTGTGGTGCCGAGGCCTCACCCCTGGAGCTAGC
GGCTGAGGCTGGGCACGTAGCGATTGTTACAGCACTACTCCGCCACGGCG
CGGATGTTAACAGCTCCGACTGTCCCGGGCAACCGGCGCTTCACCGTGCC
GCCGACAGAGATCGCGTAGGATGCCTCAGGGAGCTCATCCGATACGGTGC
CAATCTGGACGCCAGGGACGCCGACGCCGAGACCGCTCTCCACCACGCGG
CAACATTCGATCGGGCGGGGGCGATTGAAGAGCTCGCCCGGGCGGGAGCC
GACATCGAAGCGATCGGGGAGGAGGGATATACCCCGCTCCACCTAGCCTG
TCGATTCCTCAAGCAGAACGCTGTGGCCGCCCTTCTGCGAAACGGTGCAA
GGGTGCTGACGCTTGATGAGTACGGGTACACGCCTCTGCACTCTGCTGCC
GCCAATGGCGCTAAGGCGGGCACCCACGCCGTGGTGGACTTGCTGCTTAC
ATGGGGTGCCGACCCTTACGCCGTCACAGCGGGCGGATACACCGCCGCAG
ACATCATCGGGCACTACGAGGGCGGCGAGGAGCTCTTGGTCGAGGACGCC
GAGCGTATCAGACGCATGCTTTTG
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Coding sequence (CDS) from alignment at F-distichus_contig98337:765..2138-

>mRNA_F-distichus_contig98337.19272.1 ID=mRNA_F-distichus_contig98337.19272.1|Name=mRNA_F-distichus_contig98337.19272.1|organism=Fucus distichus monoicous|type=CDS|length=2748bp|location=Sequence derived from alignment at F-distichus_contig98337:765..2138- (Fucus distichus monoicous)
TGGCTGAGACTCTTGCTTGAGCTAGCTGCAGACACGGGCGACATGGCACT
CCTATCAACGCTTCAGAGCGCCGGCGCCGAGGGGAGCATCGTACACCTGG
CCGTAAGAGGCGGCCTCGAGATGCTCGTACGTGACCACTTCGAGCGCGGC
GCCTCTGTTAACCAGCGTGACGTCAACGGCGACTGTCCTCTTCATCTAGC
CGCATCCAAGGGTAATGAGCGGATGGTTCGGGTGCGCCTTTCGTGCGGGG
CAGACGAAAACGCACAGGACATGAAGCGCCGCACGCCGCTACACTTGGCG
GCTAGCCACGGCCACGCAGAGACGGCAGCAGCTCTTCTCGACGGAGGCGC
CTGGGTAAGTCCATTCTGCGACGTAGAAGGCTGCTCCCCGCTGGAGCTGG
CCGTGCACCACGGACACCTACACGTAGTAGAGGTGCTGGCAAAGTGTGGT
GCAGATTTGGATGCGGCCACTTCCACCGGAGGGATTTCCTTACAAGTAGC
CGCGAGTCGCGGGATGGTGGGTCTGATTGAATCTCTCGTGCGTGCTGGCG
CCCGCCCGAACGTCCGTGATGCCGACGGATCGACCGCTCTTCACGTTGCC
GCCGAGCGCGGCTTGTGTGACGTCCTCCGGACGCTGGTAACACAAGGAGC
CGACCCGGCCCAGTTCAACAACGCCGGTCGAACCCCGCTCTCCCTGGCCG
CCGGAGCGGGGCATCTTGAGGCAACTTTGGTGTTGCTGTCCATTGCGCCC
TCCACCGTCTCGCTTCGGTGTGGTGCCGAGGCCTCACCCCTGGAGCTAGC
GGCTGAGGCTGGGCACGTAGCGATTGTTACAGCACTACTCCGCCACGGCG
CGGATGTTAACAGCTCCGACTGTCCCGGGCAACCGGCGCTTCACCGTGCC
GCCGACAGAGATCGCGTAGGATGCCTCAGGGAGCTCATCCGATACGGTGC
CAATCTGGACGCCAGGGACGCCGACGCCGAGACCGCTCTCCACCACGCGG
CAACATTCGATCGGGCGGGGGCGATTGAAGAGCTCGCCCGGGCGGGAGCC
GACATCGAAGCGATCGGGGAGGAGGGATATACCCCGCTCCACCTAGCCTG
TCGATTCCTCAAGCAGAACGCTGTGGCCGCCCTTCTGCGAAACGGTGCAA
GGGTGCTGACGCTTGATGAGTACGGGTACACGCCTCTGCACTCTGCTGCC
GCCAATGGCGCTAAGGCGGGCACCCACGCCGTGGTGGACTTGCTGCTTAC
ATGGGGTGCCGACCCTTACGCCGTCACAGCGGGCGGATACACCGCCGCAG
ACATCATCGGGCACTACGAGGGCGGCGAGGAGCTCTTGGTCGAGGACGCC
GAGCGTATCAGACGCATGCTTTTGTGGCTGAGACTCTTGCTTGAGCTAGC
TGCAGACACGGGCGACATGGCACTCCTATCAACGCTTCAGAGCGCCGGCG
CCGAGGGGAGCATCGTACACCTGGCCGTAAGAGGCGGCCTCGAGATGCTC
GTACGTGACCACTTCGAGCGCGGCGCCTCTGTTAACCAGCGTGACGTCAA
CGGCGACTGTCCTCTTCATCTAGCCGCATCCAAGGGTAATGAGCGGATGG
TTCGGGTGCGCCTTTCGTGCGGGGCAGACGAAAACGCACAGGACATGAAG
CGCCGCACGCCGCTACACTTGGCGGCTAGCCACGGCCACGCAGAGACGGC
AGCAGCTCTTCTCGACGGAGGCGCCTGGGTAAGTCCATTCTGCGACGTAG
AAGGCTGCTCCCCGCTGGAGCTGGCCGTGCACCACGGACACCTACACGTA
GTAGAGGTGCTGGCAAAGTGTGGTGCAGATTTGGATGCGGCCACTTCCAC
CGGAGGGATTTCCTTACAAGTAGCCGCGAGTCGCGGGATGGTGGGTCTGA
TTGAATCTCTCGTGCGTGCTGGCGCCCGCCCGAACGTCCGTGATGCCGAC
GGATCGACCGCTCTTCACGTTGCCGCCGAGCGCGGCTTGTGTGACGTCCT
CCGGACGCTGGTAACACAAGGAGCCGACCCGGCCCAGTTCAACAACGCCG
GTCGAACCCCGCTCTCCCTGGCCGCCGGAGCGGGGCATCTTGAGGCAACT
TTGGTGTTGCTGTCCATTGCGCCCTCCACCGTCTCGCTTCGGTGTGGTGC
CGAGGCCTCACCCCTGGAGCTAGCGGCTGAGGCTGGGCACGTAGCGATTG
TTACAGCACTACTCCGCCACGGCGCGGATGTTAACAGCTCCGACTGTCCC
GGGCAACCGGCGCTTCACCGTGCCGCCGACAGAGATCGCGTAGGATGCCT
CAGGGAGCTCATCCGATACGGTGCCAATCTGGACGCCAGGGACGCCGACG
CCGAGACCGCTCTCCACCACGCGGCAACATTCGATCGGGCGGGGGCGATT
GAAGAGCTCGCCCGGGCGGGAGCCGACATCGAAGCGATCGGGGAGGAGGG
ATATACCCCGCTCCACCTAGCCTGTCGATTCCTCAAGCAGAACGCTGTGG
CCGCCCTTCTGCGAAACGGTGCAAGGGTGCTGACGCTTGATGAGTACGGG
TACACGCCTCTGCACTCTGCTGCCGCCAATGGCGCTAAGGCGGGCACCCA
CGCCGTGGTGGACTTGCTGCTTACATGGGGTGCCGACCCTTACGCCGTCA
CAGCGGGCGGATACACCGCCGCAGACATCATCGGGCACTACGAGGGCGGC
GAGGAGCTCTTGGTCGAGGACGCCGAGCGTATCAGACGCATGCTTTTG
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