mRNA_F-distichus_contig9740.19195.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9740.19195.1
Unique NamemRNA_F-distichus_contig9740.19195.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9740.19195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9740contigF-distichus_contig9740:777..1980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size520
Cds size513
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9740.19195.1prot_F-distichus_contig9740.19195.1Fucus distichus monoicouspolypeptideF-distichus_contig9740 777..1973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.3416302-CDS-F-distichus_contig9740:776..10581622931154.3416302-CDS-F-distichus_contig9740:776..1058Fucus distichus monoicousCDSF-distichus_contig9740 777..1058 -
1690886181.7886057-CDS-F-distichus_contig9740:776..10581690886181.7886057-CDS-F-distichus_contig9740:776..1058Fucus distichus monoicousCDSF-distichus_contig9740 777..1058 -
1622931154.3594456-CDS-F-distichus_contig9740:1742..19731622931154.3594456-CDS-F-distichus_contig9740:1742..1973Fucus distichus monoicousCDSF-distichus_contig9740 1743..1973 -
1690886181.8054135-CDS-F-distichus_contig9740:1742..19731690886181.8054135-CDS-F-distichus_contig9740:1742..1973Fucus distichus monoicousCDSF-distichus_contig9740 1743..1973 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.3753717-UTR-F-distichus_contig9740:1973..19801622931154.3753717-UTR-F-distichus_contig9740:1973..1980Fucus distichus monoicousUTRF-distichus_contig9740 1974..1980 -
1690886181.8192053-UTR-F-distichus_contig9740:1973..19801690886181.8192053-UTR-F-distichus_contig9740:1973..1980Fucus distichus monoicousUTRF-distichus_contig9740 1974..1980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9740.19195.1

>prot_F-distichus_contig9740.19195.1 ID=prot_F-distichus_contig9740.19195.1|Name=mRNA_F-distichus_contig9740.19195.1|organism=Fucus distichus monoicous|type=polypeptide|length=171bp
MENSRKRYQAFMSESEGAGTMKSRRMTMDGAEERALRVAAASKATTEMGN
TFLSEVSGRGGGVDAIDLRRQACEEAQVVDIARDAFTGAENDGESTAEFS
FSTSTKYRRKLTDTPARKRPPMFSFANVVPAKRSRPARDRELDGSDPQSL
ASADGVGAIDDESSGVFEFSR
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mRNA from alignment at F-distichus_contig9740:777..1980-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9740.19195.1 ID=mRNA_F-distichus_contig9740.19195.1|Name=mRNA_F-distichus_contig9740.19195.1|organism=Fucus distichus monoicous|type=mRNA|length=1204bp|location=Sequence derived from alignment at F-distichus_contig9740:777..1980- (Fucus distichus monoicous)
CGCGGCGATGGAAAACAGCAGGAAGCGTTACCAGGCGTTTATGTCGGAGT
CAGAGGGAGCGGGTACTATGAAGTCACGAAGGATGACCATGGACGGGGCG
GAGGAAAGGGCACTGCGAGTTGCGGCGGCGTCCAAAGCGACGACCGAAAT
GGGGAACACTTTTCTTTCGGAGGTGTCAGGACGGGGAGGGGGAGTTGATG
CGATCGACTTGAGGAGGCAGGCATGCGAGGAAGCTCAGGTGAAGTTTGCG
GCAAATGAGGGCAGGGCAAATTATTATTGTTTCGTGTCCCTTTGCGATAT
CGTCGCTCGGCAGGATTTAGCAGTTGATCATCAGTATCGTTCGGTGGGAT
GATGCCCTGCCATATGTCGAAACTCCTCTGCGGCAATTCTCGTCAACCTT
TTTTGTTGATGTGTTGATCGTAGACCCTCTTGGGTCCTGTTCGCCAGTTG
ATATCATCATCAACCTTAGGGGAGCGCAGCGCCGTCCATTATTTTGGAGA
CCGTCCGGGATGTTAGCCGTTGTCGCTAATGATATACTGTTTGCCGTAAA
TCGAGACCGTTGACCGTACCGTGCCATTAATAACAGAACCCAATAATAGA
CAGTATCGAGACCGTTAAAAACCGTTAACGGTTGACCACAACGCCACGGG
GGAAACCCGTCCCGTACGTTTCTGTTCGGTTGATTTTGGATGAGCCCGAG
TGGGATGGTGGCCTCAATGTTTTCGAACGCCTTCGCTTTTGTGTATATTC
CCGTATCATCCTACTCTCTGATAATAATAGCGTTTTGCACGGTATTAATG
TTAATAGCCACATTCTAATCGCGTGACTCGCGTAACCTGCCTCATGGTGC
CCTGCCGCATGTACTCGTTGTGCACCTCATTTTCCCTCTTGATGCAATTC
TTGTCCGAAACTTTCGCGGAAGGTGGTTGACATTGCCAGAGATGCCTTCA
CCGGCGCCGAAAACGACGGAGAATCCACGGCAGAGTTTTCGTTTTCGACC
AGCACGAAGTACCGGAGGAAGCTCACGGATACGCCCGCTAGAAAACGCCC
GCCCATGTTCTCCTTCGCGAACGTCGTCCCGGCCAAGCGCAGCCGACCCG
CCCGCGATAGGGAACTTGACGGTTCTGACCCTCAATCGCTTGCCTCTGCT
GACGGTGTTGGTGCCATAGACGATGAAAGCTCCGGGGTCTTCGAGTTTAG
CCGT
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Coding sequence (CDS) from alignment at F-distichus_contig9740:777..1980-

>mRNA_F-distichus_contig9740.19195.1 ID=mRNA_F-distichus_contig9740.19195.1|Name=mRNA_F-distichus_contig9740.19195.1|organism=Fucus distichus monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at F-distichus_contig9740:777..1980- (Fucus distichus monoicous)
ATGGAAAACAGCAGGAAGCGTTACCAGGCGTTTATGTCGGAGTCAGAGGG
AGCGGGTACTATGAAGTCACGAAGGATGACCATGGACGGGGCGGAGGAAA
GGGCACTGCGAGTTGCGGCGGCGTCCAAAGCGACGACCGAAATGGGGAAC
ACTTTTCTTTCGGAGGTGTCAGGACGGGGAGGGGGAGTTGATGCGATCGA
CTTGAGGAGGCAGGCATGCGAGGAAGCTCAGATGGAAAACAGCAGGAAGC
GTTACCAGGCGTTTATGTCGGAGTCAGAGGGAGCGGGTACTATGAAGTCA
CGAAGGATGACCATGGACGGGGCGGAGGAAAGGGCACTGCGAGTTGCGGC
GGCGTCCAAAGCGACGACCGAAATGGGGAACACTTTTCTTTCGGAGGTGT
CAGGACGGGGAGGGGGAGTTGATGCGATCGACTTGAGGAGGCAGGCATGC
GAGGAAGCTCAGGTGGTTGACATTGCCAGAGATGCCTTCACCGGCGCCGA
AAACGACGGAGAATCCACGGCAGAGTTTTCGTTTTCGACCAGCACGAAGT
ACCGGAGGAAGCTCACGGATACGCCCGCTAGAAAACGCCCGCCCATGTTC
TCCTTCGCGAACGTCGTCCCGGCCAAGCGCAGCCGACCCGCCCGCGATAG
GGAACTTGACGGTTCTGACCCTCAATCGCTTGCCTCTGCTGACGGTGTTG
GTGCCATAGACGATGAAAGCTCCGGGGTCTTCGAGTTTAGCCGTGTGGTT
GACATTGCCAGAGATGCCTTCACCGGCGCCGAAAACGACGGAGAATCCAC
GGCAGAGTTTTCGTTTTCGACCAGCACGAAGTACCGGAGGAAGCTCACGG
ATACGCCCGCTAGAAAACGCCCGCCCATGTTCTCCTTCGCGAACGTCGTC
CCGGCCAAGCGCAGCCGACCCGCCCGCGATAGGGAACTTGACGGTTCTGA
CCCTCAATCGCTTGCCTCTGCTGACGGTGTTGGTGCCATAGACGATGAAA
GCTCCGGGGTCTTCGAGTTTAGCCGT
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