mRNA_F-distichus_contig96096.19065.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96096.19065.1
Unique NamemRNA_F-distichus_contig96096.19065.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96096.19065.1 vs. uniprot
Match: D8LF40_ECTSI (Putative two-pore calcium channel (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF40_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 5.720e-73
Identity = 122/147 (82.99%), Postives = 133/147 (90.48%), Query Frame = 1 
Query:    1 RTAILSLRTRPFRRFYAVVSNMLPGFLRVCLPVLFFLLLSASYAALAFGRAKQDFEDPTAAGYAIWILMVCADNYETLVNEPSRHPVYVPFVVMIIVVGSMFLLSLLLGVTYDVFIEHTTEQVKSERLKELKGLNMAFATLDPTVRG 441
            R AILS+RTR  RRFYAVVS MLPGFLRVCLPV+FFLLLSASYAAL+FGRAK DFEDP+ AGYAIWILMVCADNYE LV++ S HP YVPF+VM+IVVGSMFLLSLLLGVTYDVFIEHTTEQV  ER+KELKGLN+AFAT+DPT  G
Sbjct:  232 RPAILSVRTRHIRRFYAVVSQMLPGFLRVCLPVVFFLLLSASYAALSFGRAKSDFEDPSTAGYAIWILMVCADNYEALVHDRSTHPAYVPFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQVNQERMKELKGLNVAFATMDPTGTG 378
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BLAST of mRNA_F-distichus_contig96096.19065.1 vs. uniprot
Match: A0A6H5KF87_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF87_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 6.660e-69
Identity = 119/151 (78.81%), Postives = 133/151 (88.08%), Query Frame = 1 
Query:    1 RTAILSLRTRPFRRFYAVVSNMLPGFLRVCLPVLFFLLLSASYAALAFGRAKQDFEDPTAAGYAIWILMVCADNYETLVNEPSRHPVYVPFVVMIIVVGSMFLLSLLLGVTYDVFIEHTTEQVKS----ERLKELKGLNMAFATLDPTVRG 441
            R AILS+RTR  RRFYAVVS MLPGFLRVCLP++FFLLLSASYAAL+FGRAK +FEDP+ AGYAIWILMVCADNYE LV++ S HP YVPF+VM+IVVGSMFLLSLLLGVTYDVFIEHTTEQ +S    ER+KELKGLN+AFAT+DP   G
Sbjct:  232 RPAILSVRTRHIRRFYAVVSQMLPGFLRVCLPIVFFLLLSASYAALSFGRAKSEFEDPSTAGYAIWILMVCADNYEALVHDRSTHPAYVPFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQARSTVNQERMKELKGLNVAFATMDPMGTG 382
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BLAST of mRNA_F-distichus_contig96096.19065.1 vs. uniprot
Match: A0A7S3M3M3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M3M3_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.540e-19
Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = 1 
Query:   19 LRTRPFRRFYAVVSNMLPGFLRVCLPVLFFLLLSASYAALAFGRAKQDFEDPTAAGYAIWILMVCADNYETLV-NEPSRHPVYVPFVVMIIVVGSMFLLSLLLGVTYDVFIEHTTEQVKSERLKELKGLNMAFATLDPTVRG 441
            LR R  RRF+ V+  M+PG     +P+LFF+++    +AL F    QD  +P    Y  + L+   DN++ ++ +E   +  Y+ F    I VG  FLLSL++G TY+ +     +Q+K ERLKE++GL  AF++LD    G
Sbjct:   48 LRARKGRRFFEVLKKMMPGMTHSLVPLLFFIVIVMVLSALMFDGTIQDLANPMFTSYNWFFLIFTNDNFDRILPDEVMMNMSYLLFFFPCIYVGQQFLLSLIIGDTYETYKAFVKKQLKKERLKEMQGLTKAFSSLDDQKHG 189
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BLAST of mRNA_F-distichus_contig96096.19065.1 vs. uniprot
Match: A0A482T0I9_9ARCH (Ion transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T0I9_9ARCH)

HSP 1 Score: 87.4 bits (215), Expect = 2.870e-17
Identity = 48/137 (35.04%), Postives = 79/137 (57.66%), Query Frame = 1 
Query:   19 LRTRPFRRFYAVVSNMLPGFLRVCLPVLFFLLLSASYAALAFGRAKQDFEDPTAAGYAIWILMVCADNYETLV-NEPSRHPVYVPFVVMIIVVGSMFLLSLLLGVTYDVFIEHTTEQVKSERLKELKGLNMAFATLD 426
            LR R  R+F+ V+  M+PG +   +P++FF+L+    ++L+F    ++F+      Y    L+   DN++ L+      +  Y+ F    I VG  FLLSL++G TY+ F  +  +Q+K E+LKE++GL  AFA LD
Sbjct:    5 LRARRGRKFFEVLKKMVPGMMHSLVPIVFFVLIIMGMSSLSFDNLIEEFKSTAYTSYNWLFLIFTNDNFDRLLPGSIMVNMSYLLFFFPAIYVGQRFLLSLIIGDTYETFRSYVKKQLKKEKLKEMQGLTKAFAALD 141
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BLAST of mRNA_F-distichus_contig96096.19065.1 vs. uniprot
Match: L1J300_GUITC (EF-hand domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J300_GUITC)

HSP 1 Score: 55.5 bits (132), Expect = 4.050e-6
Identity = 47/158 (29.75%), Postives = 73/158 (46.20%), Query Frame = 1 
Query:    1 RTAILSLRTRPFRRFYAVVSNMLPGFLRVC-LPVLFFLLLSASYAALAFGR---------AKQDFEDPTAAGYAIWILMVCADNYETLVNEP-SRHPVYVPFVVMIIVVGSMFLLSLLLGVTYDVFIEHTTEQVKSERLKELKGLNMAFATLDPTVRG 441
            R  +L+ R R  RR  +    M    + V  LP+L  L   +      +GR          +  F     A   +++L    DN++ +V E   +HPV   F +  IV  S FL+S+ LGV +D+++E   + VK+E  KE K +  AF  LD   +G
Sbjct:  174 RLTVLAARHRDVRRLISFFPTMCVKLVTVFFLPLLGVLAFFSILCVRIYGRLPAEHSLDLGEDSFSSVMPAIRTLFLLSTI-DNFDPVVTEAYKQHPVSFFFFLAFIVFASFFLMSVALGVMFDLYLEDHEKTVKAEAKKEEKSMAKAFQKLDVEEQG 330
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BLAST of mRNA_F-distichus_contig96096.19065.1 vs. uniprot
Match: A0A7S0F1K7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F1K7_9CRYP)

HSP 1 Score: 52.8 bits (125), Expect = 3.020e-5
Identity = 44/148 (29.73%), Postives = 70/148 (47.30%), Query Frame = 1 
Query:    1 RTAILSLRTRPFRRFYAVVSNMLPGFLRVC-LPVLFFLLLSASYAALAFGRAKQDF-----EDPTAA---GYAIWILMVCADNYETLVNEP-SRHPVYVPFVVMIIVVGSMFLLSLLLGVTYDVFIEHTTEQVKSERLKELKGLNMAF 414
            R  +L+ R R  RR  +    M    + V  LP+L  L   +      +GR  Q+      ED  ++         L+   DN++ +V E   +HP+   F +  IV  S FL+S+ LGV +D+++E   + VK+E  KE K +  AF
Sbjct:  195 RLTVLAARHRDVRRLISFFPTMCVKLVTVFFLPLLGVLAFFSILCVRIYGRLPQEHSLDLGEDSFSSVLPAIRTLFLLSTIDNFDPVVTEAYKQHPISFFFFLAFIVFASFFLMSVALGVMFDLYLEDHEKTVKAEAKKEEKSVAKAF 342
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96096.19065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LF40_ECTSI5.720e-7382.99Putative two-pore calcium channel (Partial) (Fragm... [more]
A0A6H5KF87_9PHAE6.660e-6978.81Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S3M3M3_9STRA5.540e-1936.62Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482T0I9_9ARCH2.870e-1735.04Ion transporter n=1 Tax=archaeon TaxID=1906665 Rep... [more]
L1J300_GUITC4.050e-629.75EF-hand domain-containing protein n=1 Tax=Guillard... [more]
A0A7S0F1K7_9CRYP3.020e-529.73Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96096contigF-distichus_contig96096:372..1916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score244.2
Seed ortholog evalue3.8e-62
Seed eggNOG ortholog2880.D8LF40
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Ion transport protein
EggNOG OGs2E9E1@1,2SFS9@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size441
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96096.19065.1prot_F-distichus_contig96096.19065.1Fucus distichus monoicouspolypeptideF-distichus_contig96096 372..1916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931138.5451436-CDS-F-distichus_contig96096:371..4461622931138.5451436-CDS-F-distichus_contig96096:371..446Fucus distichus monoicousCDSF-distichus_contig96096 372..446 -
1690886174.5069396-CDS-F-distichus_contig96096:371..4461690886174.5069396-CDS-F-distichus_contig96096:371..446Fucus distichus monoicousCDSF-distichus_contig96096 372..446 -
1622931138.5765553-CDS-F-distichus_contig96096:1179..13481622931138.5765553-CDS-F-distichus_contig96096:1179..1348Fucus distichus monoicousCDSF-distichus_contig96096 1180..1348 -
1690886174.5206833-CDS-F-distichus_contig96096:1179..13481690886174.5206833-CDS-F-distichus_contig96096:1179..1348Fucus distichus monoicousCDSF-distichus_contig96096 1180..1348 -
1622931138.5950134-CDS-F-distichus_contig96096:1719..19161622931138.5950134-CDS-F-distichus_contig96096:1719..1916Fucus distichus monoicousCDSF-distichus_contig96096 1720..1916 -
1690886174.5330806-CDS-F-distichus_contig96096:1719..19161690886174.5330806-CDS-F-distichus_contig96096:1719..1916Fucus distichus monoicousCDSF-distichus_contig96096 1720..1916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96096.19065.1

>prot_F-distichus_contig96096.19065.1 ID=prot_F-distichus_contig96096.19065.1|Name=mRNA_F-distichus_contig96096.19065.1|organism=Fucus distichus monoicous|type=polypeptide|length=147bp
RTAILSLRTRPFRRFYAVVSNMLPGFLRVCLPVLFFLLLSASYAALAFGR
AKQDFEDPTAAGYAIWILMVCADNYETLVNEPSRHPVYVPFVVMIIVVGS
MFLLSLLLGVTYDVFIEHTTEQVKSERLKELKGLNMAFATLDPTVRG
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mRNA from alignment at F-distichus_contig96096:372..1916-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96096.19065.1 ID=mRNA_F-distichus_contig96096.19065.1|Name=mRNA_F-distichus_contig96096.19065.1|organism=Fucus distichus monoicous|type=mRNA|length=1545bp|location=Sequence derived from alignment at F-distichus_contig96096:372..1916- (Fucus distichus monoicous)
CGCACAGCGATCTTGTCTCTGCGAACACGACCCTTTCGGCGCTTTTACGC
CGTGGTGAGCAACATGCTCCCGGGTTTCCTCAGAGTTTGTCTTCCCGTCC
TCTTCTTCCTGCTGCTGAGCGCCAGCTACGCCGCCCTGGCGTTCGGGCGG
GCCAAGCAAGATTTTGAGGACCCCACAGCGGCGGGATACGCCATCTGGTG
AGTAAAAATACGCTTCCCGCTGGGGTGACGGGAGTCTGTGTAGGATTCAG
TGAAATGTGGCGCACCAGATCGAAGCCAAGCCCCCTCGTTCACCTTCTCC
GGCTTTCTCCCTCGGAGACAGACGCTCAGGTCATCGCGAGCGACATGATA
GCGTCTAATGCACATATTGTTGTGTTTTTTTTACTTGGCTTAACTTGACG
GCGTCGGCTAATTCGATCTGTTTGGTTGGAGGGTTTTTGGTGAAATTGCC
TCTCTTAAACAAGAAACATAGTCAAGAACTCTTGTTGCGGGTTTTTTTTT
CTCTCTATTTTCTTATTAATTTATGTTTTTCTTTCCCTCGTTCTCCCATT
CTCCCGCTTCGCGCGCAGGATCCTTATGGTGTGCGCGGACAACTACGAGA
CGCTGGTGAACGAGCCCTCTCGACACCCGGTCTACGTGCCCTTTGTGGTG
ATGATCATCGTCGTGGGATCGATGTTTCTCCTGTCCCTGCTCCTGGGAGT
GACGTACGATGTTTTCATCGAACACACCACGGAACAGGTGCGCTTACTGC
TGCGGAGATTTGCACGCACAAGGCCCAAATATCATAGTTGGTCTTAGGTA
AGGGGACGAATTGATCGGATCAGGTCAGATCAGATCAGATCGACCCAACA
CAAATAGTTTAATTATGTACTGTCTGCTTTCAAACGATGTGTTCGTCAGA
GCTAGTAACCAATCAACGCGAATATTGTTGAACTGTATGTATGTATGTAT
GTATGGTCACAAATATAGCAGCATGGTCACAAATACAGCAAGAGTGTGGA
TCAACCGGGTAAGGTTGCCAACCATGCTCTTGGTCAGCTGAACAGGGAAA
ATGATTTCTTACGGGTATATTATCATTTTTCTTTTACACAATTTTTCGGG
TATTGGCAGCGGCGTTTAGTCGAAAGCCGTGATCGATCCCCTTGTGGATA
GTTTCGAGATTTCTATGTTTTTTTAAGAAAAATCTGAACGTATCTCTTAG
GATATGGTGTCGTATCGTATCATACGAAATCGTATATTACGGTAAGAGGA
TCAGGAGCGGCGGAATTGGTTTGTTCGGCATTCGCTCATGGTCGAGCCCC
TGGCCATTTTCTCGGTCGTTTACGCCCCCCCGTCCCCGTCCCCCGTCCCC
GCACGCCCGGTGTATTTCCTCTCCGCCGTACTTCATGGTCGTTCAAAATA
TCCCTTACCTTTTGGCCCGAATAGATAACCCAACGAAATGCTTCGCGTAA
ACTCTTGCGGTCATCGGCAGGTGAAGAGTGAGCGGCTGAAGGAGCTCAAG
GGGCTCAACATGGCGTTCGCCACCTTGGATCCGACGGTGAGGGGG
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Coding sequence (CDS) from alignment at F-distichus_contig96096:372..1916-

>mRNA_F-distichus_contig96096.19065.1 ID=mRNA_F-distichus_contig96096.19065.1|Name=mRNA_F-distichus_contig96096.19065.1|organism=Fucus distichus monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at F-distichus_contig96096:372..1916- (Fucus distichus monoicous)
CGCACAGCGATCTTGTCTCTGCGAACACGACCCTTTCGGCGCTTTTACGC
CGTGGTGAGCAACATGCTCCCGGGTTTCCTCAGAGTTTGTCTTCCCGTCC
TCTTCTTCCTGCTGCTGAGCGCCAGCTACGCCGCCCTGGCGTTCGGGCGG
GCCAAGCAAGATTTTGAGGACCCCACAGCGGCGGGATACGCCATCTGCGC
ACAGCGATCTTGTCTCTGCGAACACGACCCTTTCGGCGCTTTTACGCCGT
GGTGAGCAACATGCTCCCGGGTTTCCTCAGAGTTTGTCTTCCCGTCCTCT
TCTTCCTGCTGCTGAGCGCCAGCTACGCCGCCCTGGCGTTCGGGCGGGCC
AAGCAAGATTTTGAGGACCCCACAGCGGCGGGATACGCCATCTGGATCCT
TATGGTGTGCGCGGACAACTACGAGACGCTGGTGAACGAGCCCTCTCGAC
ACCCGGTCTACGTGCCCTTTGTGGTGATGATCATCGTCGTGGGATCGATG
TTTCTCCTGTCCCTGCTCCTGGGAGTGACGTACGATGTTTTCATCGAACA
CACCACGGAACAGGATCCTTATGGTGTGCGCGGACAACTACGAGACGCTG
GTGAACGAGCCCTCTCGACACCCGGTCTACGTGCCCTTTGTGGTGATGAT
CATCGTCGTGGGATCGATGTTTCTCCTGTCCCTGCTCCTGGGAGTGACGT
ACGATGTTTTCATCGAACACACCACGGAACAGGTGAAGAGTGAGCGGCTG
AAGGAGCTCAAGGGGCTCAACATGGCGTTCGCCACCTTGGATCCGACGGT
GAGGGGGGTGAAGAGTGAGCGGCTGAAGGAGCTCAAGGGGCTCAACATGG
CGTTCGCCACCTTGGATCCGACGGTGAGGGGG
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