mRNA_F-distichus_contig9500.18956.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9500.18956.1
Unique NamemRNA_F-distichus_contig9500.18956.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig9500.18956.1 vs. uniprot
Match: D7FWG4_ECTSI (Aminoacyl-tRNA hydrolase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWG4_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 7.090e-78
Identity = 118/150 (78.67%), Postives = 131/150 (87.33%), Query Frame = 1
Query:    1 EGFEEEERALQTGDGARSWSSDTGPFKLVLVVNMELKMGKGKARICRSSPLGIVAQCCHATLGNYRLCERYCPSALKGWENMGQAKICVKCPTAAELFDIQAKAQAAGIINYLVMDAGHTQIAPGSRTVLALGPAPVWAFEGISSHLKLM 450
            E FEEEERALQ+  GAR+WS D GPFKLVL+VNM+LKMGKGK          +VAQCCHATLGNYR+ ER+CPSAL+GWE+MGQAKICVKCPT  EL+DIQAKAQ+AG++NYLVMDAGHTQIA GSRTVLALGPAPVWAFEGISSHLKLM
Sbjct:   23 EEFEEEERALQSNGGARAWSLDDGPFKLVLIVNMQLKMGKGK----------VVAQCCHATLGNYRISERHCPSALRGWEHMGQAKICVKCPTETELYDIQAKAQSAGLVNYLVMDAGHTQIAAGSRTVLALGPAPVWAFEGISSHLKLM 162          
BLAST of mRNA_F-distichus_contig9500.18956.1 vs. uniprot
Match: A0A836C8I9_9STRA (Aminoacyl-tRNA hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8I9_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.520e-46
Identity = 80/137 (58.39%), Postives = 97/137 (70.80%), Query Frame = 1
Query:   40 DGARSWSSDTGPFKLVLVVNMELKMGKGKARICRSSPLGIVAQCCHATLGNYRLCERYCPSALKGWENMGQAKICVKCPTAAELFDIQAKAQAAGIINYLVMDAGHTQIAPGSRTVLALGPAPVWAFEGISSHLKLM 450
            D  R W+ D GPFKLVLVVN ELKMGKGK          + AQCCHATLG Y+   R+ P+ +K WE + QAKICVKCP  +E++ I+ KA+AAG++ Y+V DAG TQI  GSRTVL +GPAP  AF GI+ HLKLM
Sbjct:   74 DQIRDWTIDDGPFKLVLVVNSELKMGKGK----------VAAQCCHATLGCYKTARRHAPNCVKSWEYLAQAKICVKCPEESEMWQIREKAEAAGLVTYMVADAGRTQIPSGSRTVLGIGPAPETAFLGITDHLKLM 200          
BLAST of mRNA_F-distichus_contig9500.18956.1 vs. uniprot
Match: A0A7S3MCE7_9STRA (Aminoacyl-tRNA hydrolase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCE7_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.440e-43
Identity = 77/141 (54.61%), Postives = 100/141 (70.92%), Query Frame = 1
Query:   40 DGA----RSWSSDTGPFKLVLVVNMELKMGKGKARICRSSPLGIVAQCCHATLGNYRLCERYCPSALKGWENMGQAKICVKCPTAAELFDIQAKAQAAGIINYLVMDAGHTQIAPGSRTVLALGPAPVWAFEGISSHLKLM 450
            DGA     S++ + GPFKL+L VN  L MGKGK          + AQCCHATLG Y++  +YC +A++ WE+ GQAK+ VK  T AE+ D+QAKA AAG++ Y V D G TQIA GSRTVLA+GPAP +AF+G++SHLKL+
Sbjct:   57 DGAYDILNSYTEEDGPFKLILCVNNSLSMGKGK----------VAAQCCHATLGAYKIAIKYCQTAVENWEDDGQAKVAVKVDTEAEMADLQAKAMAAGLVTYFVQDEGRTQIAAGSRTVLAIGPAPAYAFQGLTSHLKLL 187          
BLAST of mRNA_F-distichus_contig9500.18956.1 vs. uniprot
Match: A0A7S0XWF5_HEMAN (Aminoacyl-tRNA hydrolase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XWF5_HEMAN)

HSP 1 Score: 142 bits (359), Expect = 4.550e-39
Identity = 75/133 (56.39%), Postives = 90/133 (67.67%), Query Frame = 1
Query:   52 SWSSDTGPFKLVLVVNMELKMGKGKARICRSSPLGIVAQCCHATLGNYRLCERYCPSALKGWENMGQAKICVKCPTAAELFDIQAKAQAAGIINYLVMDAGHTQIAPGSRTVLALGPAPVWAFEGISSHLKLM 450
            SWS   GP K+VLVVN ELKMGKGK          I AQC HATLG Y+      P  L+ WE +GQAKICV+CPT AE+ ++  KA+A G+I Y V DAG TQI  GSRTVLA+GPAP  AF+G++ H KL+
Sbjct:   12 SWSVVDGPGKMVLVVNQELKMGKGK----------IAAQCGHATLGAYKKAS---PQVLRMWEGLGQAKICVQCPTEAEMHEVADKARAKGLITYQVTDAGRTQIPAGSRTVLAIGPAPESAFKGVTDHFKLL 131          
BLAST of mRNA_F-distichus_contig9500.18956.1 vs. uniprot
Match: L1JZ89_GUITC (Aminoacyl-tRNA hydrolase (Fragment) n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JZ89_GUITC)

HSP 1 Score: 141 bits (356), Expect = 7.160e-39
Identity = 73/122 (59.84%), Postives = 87/122 (71.31%), Query Frame = 1
Query:   85 VLVVNMELKMGKGKARICRSSPLGIVAQCCHATLGNYRLCERYCPSALKGWENMGQAKICVKCPTAAELFDIQAKAQAAGIINYLVMDAGHTQIAPGSRTVLALGPAPVWAFEGISSHLKLM 450
            VLVVN ELKMGKGK          I AQC HA LG Y+  ++Y PSAL  WE  GQAKICV+CPT  E+++I  KA A G+I Y+VMDAG TQIA GSRTVLA+GPAP   F+G++ HLKL+
Sbjct:    1 VLVVNQELKMGKGK----------IAAQCGHAVLGAYKRGKKYAPSALTWWEKFGQAKICVQCPTEDEMWEIAKKAGAKGLITYIVMDAGRTQIAAGSRTVLAIGPAPEQQFKGLTDHLKLL 112          
BLAST of mRNA_F-distichus_contig9500.18956.1 vs. uniprot
Match: A0A7S4K0G8_9STRA (Aminoacyl-tRNA hydrolase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K0G8_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.200e-38
Identity = 74/135 (54.81%), Postives = 86/135 (63.70%), Query Frame = 1
Query:   46 ARSWSSDTGPFKLVLVVNMELKMGKGKARICRSSPLGIVAQCCHATLGNYRLCERYCPSALKGWENMGQAKICVKCPTAAELFDIQAKAQAAGIINYLVMDAGHTQIAPGSRTVLALGPAPVWAFEGISSHLKLM 450
            AR W  +  P+K+VL VN +LKMGKGK          I AQCCHA +G Y+   + CP  ++ WE  G AKI VKCP   E+  I   A   GI  YLV DAG TQIA GSRTVL LGPAPV AFEG++SHLKLM
Sbjct:   71 ARLWGMNNAPYKMVLCVNQDLKMGKGK----------IAAQCCHAAVGCYKRARKVCPDGVRAWEQTGCAKIAVKCPNQDEIEVILVAAHKRGIPLYLVADAGRTQIAAGSRTVLGLGPAPVSAFEGVTSHLKLM 195          
BLAST of mRNA_F-distichus_contig9500.18956.1 vs. uniprot
Match: A0A7S2MVX1_9STRA (Aminoacyl-tRNA hydrolase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MVX1_9STRA)

HSP 1 Score: 140 bits (353), Expect = 4.150e-37
Identity = 79/150 (52.67%), Postives = 89/150 (59.33%), Query Frame = 1
Query:   13 EEERALQTGDGA----RSWSSDTGPFKLVLVVNMELKMGKGKARICRSSPLGIVAQCCHATLGNYRLCERYCPSALKGWENMGQAKICVKCPTAAELFDIQAKAQAAGIINYLVMDAGHTQIAPGSRTVLALGPAPVWAFEGISSHLKLM 450
            E +   + G GA    + W    GP+K+VL VN EL MGKGK          I AQCCHA +G Y+   + CP+ LK WE  G AKI +KCP   EL  I  KA   GI  YLV DAG TQI  GSRTVL LGPAPV  FEGIS HLKLM
Sbjct:   75 ESDDEYEVGGGANVSSKEWGMMHGPYKMVLCVNQELGMGKGK----------IAAQCCHAAVGCYKRSLKQCPNGLKAWERTGCAKIALKCPNEQELTSILEKAYNKGIPCYLVEDAGRTQIKAGSRTVLGLGPAPVDVFEGISDHLKLM 214          
BLAST of mRNA_F-distichus_contig9500.18956.1 vs. uniprot
Match: A0A7S2YD90_9STRA (Aminoacyl-tRNA hydrolase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YD90_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.980e-36
Identity = 74/135 (54.81%), Postives = 85/135 (62.96%), Query Frame = 1
Query:   46 ARSWSSDTGPFKLVLVVNMELKMGKGKARICRSSPLGIVAQCCHATLGNYRLCERYCPSALKGWENMGQAKICVKCPTAAELFDIQAKAQAAGIINYLVMDAGHTQIAPGSRTVLALGPAPVWAFEGISSHLKLM 450
            A  W     P+K+VL VN  L MGKGK          I AQCCHA +G Y+   +  P+A+K WE  G AKI VKCP+  E+  I AKA + GI  YLV DAG TQIA GSRTVL LGPAPV  FEG+S HLKLM
Sbjct:   61 ASKWGMFNSPYKMVLCVNTSLSMGKGK----------IAAQCCHAAVGCYKRANKTIPNAVKAWECTGCAKIAVKCPSEEEMDLICAKAMSKGIPVYLVEDAGRTQIAAGSRTVLGLGPAPVSVFEGVSDHLKLM 185          
BLAST of mRNA_F-distichus_contig9500.18956.1 vs. uniprot
Match: A0A7S4VM04_9STRA (Aminoacyl-tRNA hydrolase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VM04_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.590e-35
Identity = 74/135 (54.81%), Postives = 84/135 (62.22%), Query Frame = 1
Query:   46 ARSWSSDTGPFKLVLVVNMELKMGKGKARICRSSPLGIVAQCCHATLGNYRLCERYCPSALKGWENMGQAKICVKCPTAAELFDIQAKAQAAGIINYLVMDAGHTQIAPGSRTVLALGPAPVWAFEGISSHLKLM 450
            A  W     P+K+VL VN ELKMG GK           +AQC HA +G Y+   + CP+ALK WE  G AKI VKCP   EL  I  KA + GI  YLV DAG TQIA GSRTVL LGPAPV  FEG++ HLKLM
Sbjct:  137 ASQWGIMHAPYKMVLCVNQELKMGPGKK----------MAQCSHAAVGCYKRSLKQCPAALKAWERTGCAKIAVKCPNETELISILEKAHSKGIPCYLVEDAGRTQIAAGSRTVLGLGPAPVDVFEGVTDHLKLM 261          
BLAST of mRNA_F-distichus_contig9500.18956.1 vs. uniprot
Match: K0SKQ3_THAOC (Aminoacyl-tRNA hydrolase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SKQ3_THAOC)

HSP 1 Score: 135 bits (340), Expect = 1.610e-35
Identity = 71/133 (53.38%), Postives = 86/133 (64.66%), Query Frame = 1
Query:   52 SWSSDTGPFKLVLVVNMELKMGKGKARICRSSPLGIVAQCCHATLGNYRLCERYCPSALKGWENMGQAKICVKCPTAAELFDIQAKAQAAGIINYLVMDAGHTQIAPGSRTVLALGPAPVWAFEGISSHLKLM 450
            +W     P+K+VL VN  L MGKGK          I AQC HA +G Y+  +R+C + L  WE  G AKI VKCP+  E+ +I AKA + GI  YLV DAG TQIA GSRTVL LGPAPV  F+G+S+HLKLM
Sbjct:   64 AWGISDAPYKMVLCVNTSLSMGKGK----------IAAQCGHAAVGCYKRAKRHCQAGLSAWERTGCAKIAVKCPSEDEMDEIAAKALSRGIPIYLVEDAGRTQIAAGSRTVLGLGPAPVREFDGVSNHLKLM 186          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9500.18956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG4_ECTSI7.090e-7878.67Aminoacyl-tRNA hydrolase n=2 Tax=Ectocarpus silicu... [more]
A0A836C8I9_9STRA1.520e-4658.39Aminoacyl-tRNA hydrolase n=1 Tax=Tribonema minus T... [more]
A0A7S3MCE7_9STRA1.440e-4354.61Aminoacyl-tRNA hydrolase n=1 Tax=Spumella elongata... [more]
A0A7S0XWF5_HEMAN4.550e-3956.39Aminoacyl-tRNA hydrolase n=2 Tax=Hemiselmis anders... [more]
L1JZ89_GUITC7.160e-3959.84Aminoacyl-tRNA hydrolase (Fragment) n=2 Tax=Guilla... [more]
A0A7S4K0G8_9STRA2.200e-3854.81Aminoacyl-tRNA hydrolase n=1 Tax=Odontella aurita ... [more]
A0A7S2MVX1_9STRA4.150e-3752.67Aminoacyl-tRNA hydrolase n=1 Tax=Helicotheca tames... [more]
A0A7S2YD90_9STRA3.980e-3654.81Aminoacyl-tRNA hydrolase n=1 Tax=Amphiprora paludo... [more]
A0A7S4VM04_9STRA1.590e-3554.81Aminoacyl-tRNA hydrolase n=3 Tax=Ditylum brightwel... [more]
K0SKQ3_THAOC1.610e-3553.38Aminoacyl-tRNA hydrolase n=1 Tax=Thalassiosira oce... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9500contigF-distichus_contig9500:3617..5488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.4
Seed ortholog evalue7.3e-48
Seed eggNOG ortholog2880.D7FWG4
KEGG koko:K01128,ko:K04794
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004045,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010605,GO:0016020,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0019867,GO:0030162,GO:0031090,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032543,GO:0034641,GO:0034645,GO:0042176,GO:0042177,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045861,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0052689,GO:0060255,GO:0061136,GO:0065007,GO:0071704,GO:0080090,GO:0098588,GO:0098805,GO:0140053,GO:0140098,GO:0140101,GO:1901564,GO:1901566,GO:1901576,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:2000058,GO:2000059
EggNOG free text desc.Peptidyl-tRNA hydrolase
EggNOG OGsCOG1990@1,KOG3282@2759
EC3.1.1.29
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Exons4
Model size881
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9500.18956.1prot_F-distichus_contig9500.18956.1Fucus distichus monoicouspolypeptideF-distichus_contig9500 4045..5389 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.0892208-UTR-F-distichus_contig9500:3616..40441622931126.0892208-UTR-F-distichus_contig9500:3616..4044Fucus distichus monoicousUTRF-distichus_contig9500 3617..4044 -
1690886169.2105412-UTR-F-distichus_contig9500:3616..40441690886169.2105412-UTR-F-distichus_contig9500:3616..4044Fucus distichus monoicousUTRF-distichus_contig9500 3617..4044 -
1622931126.2161257-UTR-F-distichus_contig9500:5389..54881622931126.2161257-UTR-F-distichus_contig9500:5389..5488Fucus distichus monoicousUTRF-distichus_contig9500 5390..5488 -
1690886169.2747152-UTR-F-distichus_contig9500:5389..54881690886169.2747152-UTR-F-distichus_contig9500:5389..5488Fucus distichus monoicousUTRF-distichus_contig9500 5390..5488 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.1046336-CDS-F-distichus_contig9500:4044..41551622931126.1046336-CDS-F-distichus_contig9500:4044..4155Fucus distichus monoicousCDSF-distichus_contig9500 4045..4155 -
1690886169.2250655-CDS-F-distichus_contig9500:4044..41551690886169.2250655-CDS-F-distichus_contig9500:4044..4155Fucus distichus monoicousCDSF-distichus_contig9500 4045..4155 -
1622931126.1246905-CDS-F-distichus_contig9500:4452..45611622931126.1246905-CDS-F-distichus_contig9500:4452..4561Fucus distichus monoicousCDSF-distichus_contig9500 4453..4561 -
1690886169.2362375-CDS-F-distichus_contig9500:4452..45611690886169.2362375-CDS-F-distichus_contig9500:4452..4561Fucus distichus monoicousCDSF-distichus_contig9500 4453..4561 -
1622931126.1682112-CDS-F-distichus_contig9500:4940..50171622931126.1682112-CDS-F-distichus_contig9500:4940..5017Fucus distichus monoicousCDSF-distichus_contig9500 4941..5017 -
1690886169.2456818-CDS-F-distichus_contig9500:4940..50171690886169.2456818-CDS-F-distichus_contig9500:4940..5017Fucus distichus monoicousCDSF-distichus_contig9500 4941..5017 -
1622931126.1955419-CDS-F-distichus_contig9500:5332..53891622931126.1955419-CDS-F-distichus_contig9500:5332..5389Fucus distichus monoicousCDSF-distichus_contig9500 5333..5389 -
1690886169.2638783-CDS-F-distichus_contig9500:5332..53891690886169.2638783-CDS-F-distichus_contig9500:5332..5389Fucus distichus monoicousCDSF-distichus_contig9500 5333..5389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9500.18956.1

>prot_F-distichus_contig9500.18956.1 ID=prot_F-distichus_contig9500.18956.1|Name=mRNA_F-distichus_contig9500.18956.1|organism=Fucus distichus monoicous|type=polypeptide|length=118bp
MELKMGKGKARICRSSPLGIVAQCCHATLGNYRLCERYCPSALKGWENMG
QAKICVKCPTAAELFDIQAKAQAAGIINYLVMDAGHTQIAPGSRTVLALG
PAPVWAFEGISSHLKLM*
back to top

mRNA from alignment at F-distichus_contig9500:3617..5488-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9500.18956.1 ID=mRNA_F-distichus_contig9500.18956.1|Name=mRNA_F-distichus_contig9500.18956.1|organism=Fucus distichus monoicous|type=mRNA|length=1872bp|location=Sequence derived from alignment at F-distichus_contig9500:3617..5488- (Fucus distichus monoicous)
GAGGGGTTCGAAGAGGAAGAGAGGGCGTTGCAGACCGGCGACGGGGCGCG GTCCTGGAGCTCGGACACTGGTCCTTTCAAGCTGGTGCTCGTTGTGAACA TGGAGCTCAAGATGGGGAAGGGAAAGGCAAGGATATGTCGATCTTCGCCG TTGGGCGTTGGGCGTATCTTGTGAGCTTGCTTTTTCCATTGAAGAACATA TCCTGAACCGACCGAGTGAAGTCCCTGGTACATAGGTTGTTACGCTACCT GTCTAGGGGGAAACTACCGTCTGCATTCCATTTTGGCCGAACGTGCGATG GGCGCGGCTAGTTCGTTCGTGGCCGCGGGCAGCAGGAGGAAGATCACGGG GAAGAGCCATGAATGAGTTCTGCCTGTTCATATGAAAACAAAACCCTACA TGGATTCTCGCGCCCTGTCTGCGTTGCGCCCTTCCCCCCGTATATGTACC ATGTATATTTATTTATTTCAGATTGTCGCACAATGTTGCCACGCAACGCT CGGCAACTACCGACTCTGCGAGCGATACTGTCCATCCGCCCTCAAAGGGT GAGTGCACCACACTCTCGGTAGCGTATCACTTGGCAGGGGTCGTCCGTTT AAAAACGCCGGCGGGTCACAACTGGTACTCCGAGGGCGGTATATTGAAGT GAAGACTGAATCCTCATAAAGACCGTGTCGTGAACGTTTCGTGAATAAAG TTATGGCTGAAGATGGGAAAGGCGAGGGGCGGTCAATGGGTGTCGCGCTT ACTCTGCCTGTTCCTGAAGCCGGTTTGATGGCCTGGCCTGACCGTAACCC ATCGCTGTTACACACGAGGTCGGGTTGATTCAGATTGAAGGCTGTATATT GTAGCCACCGTCGTTCCTTGGTCGATTCTCGGAATTTTTATATGTTTTCC CGTCTCTGTGGCGGGGGACCGCGGCAGGTGGGAAAACATGGGCCAAGCAA AAATCTGCGTGAAGTGCCCCACAGCGGCGGAGTTGTTCGACATACAAGCA AAAGCTCAGGCAGCAGGCATCATCAATTACCTTGTGGTTAGTGTCTTTTG TCTCTCGTTGCGCACGCGATAATATTTTAGATACTTATCGCCCAGTAGCT ATCCCAGACATGGAAGAAGAAGCAAGCATTACCGCCGCCCGACAAGCTCG CTTTGTTGGTAGCTTGTTGTCTCTCCGCATTCGAAGGGTTGGAATGGCGG TTACAGGAGGGAGATTCGCTCGTCCGTACTCCGCCTTTCGCTTCGCCGCC CCTCGCCTCATGTATCTAAAGTTTCTTTTCGGCGATTTGATCCTCTGCCT ATGTCGACTGGACGACCATGTTGTGTGCCGCAGATGGACGCTGGTCACAC GCAGATAGCGCCAGGCTCTCGTACGGTCCTTGCGCTCGGACCAGCTCCGG TGTGGGCGTTCGAGGGGATCTCCTCTCACCTAAAGCTGATGTAGGTTGGG TTGTTTGAATTTGGCGGAATAACATTTCGCCTACGACGAGCCTACCTCTG ACCAAACACGGTACACTACTGGGGTGATAAGATGGTCCCTCTGCTGTCGC ATGAGAAACGTTGGTCTTGTTCTCAGTATACTATAGTTAGCCAGTGAGTT GCAACTAGGAGTCGTTGATATGCCGACAGATATGTCGGGGATGGATTCCG TACAGCTTTGTGGAGCGCGCGGTAGGCATTAAGCGGCGTGGTTACGAGCG GTGCGTAAAGGTCGACGAACCGTTATCCTTTTAAGAGCTCGTTGTGACGG GCAATATGCGCCGATTAACCCGGTAATCCTTTTTAGTATCGTGTCCGCGA TGCATCATAAAACTGCCTGTTGGAGACCCAGCGTTTGGTACAACGTGGAA GCATCTCACCGAACGAATTACA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig9500:3617..5488-

>mRNA_F-distichus_contig9500.18956.1 ID=mRNA_F-distichus_contig9500.18956.1|Name=mRNA_F-distichus_contig9500.18956.1|organism=Fucus distichus monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at F-distichus_contig9500:3617..5488- (Fucus distichus monoicous)
ATGGAGCTCAAGATGGGGAAGGGAAAGGCAAGGATATGTCGATCTTCGCC
GTTGGGCATGGAGCTCAAGATGGGGAAGGGAAAGGCAAGGATATGTCGAT
CTTCGCCGTTGGGCATTGTCGCACAATGTTGCCACGCAACGCTCGGCAAC
TACCGACTCTGCGAGCGATACTGTCCATCCGCCCTCAAAGGATTGTCGCA
CAATGTTGCCACGCAACGCTCGGCAACTACCGACTCTGCGAGCGATACTG
TCCATCCGCCCTCAAAGGGTGGGAAAACATGGGCCAAGCAAAAATCTGCG
TGAAGTGCCCCACAGCGGCGGAGTTGTTCGACATACAAGCAAAAGCTCAG
GCAGCAGGCATCATCAATTACCTTGTGGTGGGAAAACATGGGCCAAGCAA
AAATCTGCGTGAAGTGCCCCACAGCGGCGGAGTTGTTCGACATACAAGCA
AAAGCTCAGGCAGCAGGCATCATCAATTACCTTGTGATGGACGCTGGTCA
CACGCAGATAGCGCCAGGCTCTCGTACGGTCCTTGCGCTCGGACCAGCTC
CGGTGTGGGCGTTCGAGGGGATCTCCTCTCACCTAAAGCTGATGTAGATG
GACGCTGGTCACACGCAGATAGCGCCAGGCTCTCGTACGGTCCTTGCGCT
CGGACCAGCTCCGGTGTGGGCGTTCGAGGGGATCTCCTCTCACCTAAAGC
TGATGTAG
back to top