mRNA_F-distichus_contig94992.18953.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig94992.18953.1
Unique NamemRNA_F-distichus_contig94992.18953.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig94992.18953.1 vs. uniprot
Match: D8LE75_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE75_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 5.280e-57
Identity = 89/106 (83.96%), Postives = 99/106 (93.40%), Query Frame = 1 
Query:    1 QVFEFFNNSINKQNNFQTGEIYEISHELLVLIDEFRELLDRLFSWCDLCLPANEQAFAESHRQKIQKFQVQIVQEMKRSNGARSQEVNKDNLEAWEKAHHDLLTLQ 318
            +VFE+FN +I++QNNFQTGEIYE+S ELL+L+DEFRELLDRLFSWCDLCLP N+QAFAESHRQKIQKFQVQIVQEMKRSN ARSQEV+  NLEAWEKAHHDLLT Q
Sbjct:   56 KVFEYFNGAISRQNNFQTGEIYEVSRELLMLVDEFRELLDRLFSWCDLCLPGNDQAFAESHRQKIQKFQVQIVQEMKRSNSARSQEVDGGNLEAWEKAHHDLLTSQ 161
[Close]
BLAST of mRNA_F-distichus_contig94992.18953.1 vs. uniprot
Match: A0A836CFQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFQ5_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.300e-42
Identity = 77/125 (61.60%), Postives = 93/125 (74.40%), Query Frame = 1 
Query:    1 QVFEFFNNSINKQNNFQTGEIYEISHELLVLIDEFRELLDRLFSWCDLCLPANEQAFAESHRQKIQKFQVQIVQEMKRSNGARSQ-------------------EVNKDNLEAWEKAHHDLLTLQ 318
            +VFE F ++I++ N+FQTG +YE++HE+LV IDEFRELLD+LFSWCDLCLPANEQ+FAESHR KIQKFQ+QIV EMKR+N AR+Q                   EV   NLE WEKAH +LLTLQ
Sbjct:   86 KVFEHFRDNISRVNSFQTGTVYEVTHEVLVFIDEFRELLDKLFSWCDLCLPANEQSFAESHRLKIQKFQMQIVNEMKRTNSARTQVNLHLTQRVETLRQLFTTKEVAAVNLEGWEKAHSELLTLQ 210
[Close]
BLAST of mRNA_F-distichus_contig94992.18953.1 vs. uniprot
Match: D7G572_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G572_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.150e-20
Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 1 
Query:    1 QVFEFFNNSINKQNNFQTGEIYEISHELLVLIDEFRELLDRLFSWCDLCLPANEQAFAESHRQKIQKFQ-------VQIVQEM--------KRSNGARS----QEVNKDNLEAWEKAHHDLL 309
            +VFE+F+ ++ K N FQ  E+Y +S +LL ++DE RE L+ L +WCDLCLPANEQAFAE+HR KIQ FQ         +V E         KR+   RS    ++V  +N E W + H ++L
Sbjct:  146 KVFEYFDKAVTKANCFQVKEVYSVSQDLLSVLDEARETLELLVNWCDLCLPANEQAFAEAHRIKIQHFQDYLSAGLSSVVSETADINTQLDKRAQTLRSLFSTKDVLPENQEGWYRLHREML 267
[Close]
BLAST of mRNA_F-distichus_contig94992.18953.1 vs. uniprot
Match: A0A835YMR0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.100e-20
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = 1 
Query:    1 QVFEFFNNSINKQNNFQTGEIYEISHELLVLIDEFRELLDRLFSWCDLCLPANEQAFAESHRQKIQKFQ----------VQIVQEMKRSNGARSQ---------EVNKDNLEAWEKAHHDLL 309
            +VF FFN+ +++ N+FQT E++ +S E+L ++DE RE L+ + +WCDLCLPANE AFAE+HR K+Q FQ          V  + E+      R+Q         +V  +N   W +AH DLL
Sbjct:   78 KVFAFFNSHVSQPNSFQTDEVFRVSEEVLSVLDESREQLELVTNWCDLCLPANETAFAEAHRLKLQDFQDYLSGGVTGIVNSINEVNSQLEKRAQTLQLLFTTKDVLPENRTGWIRAHRDLL 199
[Close]
BLAST of mRNA_F-distichus_contig94992.18953.1 vs. uniprot
Match: D8LEA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA5_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.460e-18
Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:    1 QVFEFFNNSINKQNNFQTGEIYEISHELLVLIDEFRELLDRLFSWCDLCLPANEQAFAESHRQKIQKFQVQIVQEMKRSNGARS-------------------QEVNKDNLEAWEKAHHDLLTLQ 318
            +V +FF     K+N  + G+I E SH+ LVLIDE REL+DRL SW  +CLPAN+   + SHR+K++ F+ ++  E+K   G RS                   ++V ++NL  WE AHH+LL +Q
Sbjct:   70 KVLDFFMTRT-KENLNRAGQIQECSHQCLVLIDELRELMDRLISWLTMCLPANDHPLSVSHRRKLKLFKGRLRNEVKILEGLRSGVTSAHSGRVHTIRSMFLTKDVAENNLLGWETAHHELLVMQ 193
[Close]
BLAST of mRNA_F-distichus_contig94992.18953.1 vs. uniprot
Match: A0A836C7X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7X8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.560e-17
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 1 
Query:    1 QVFEFFNNSINKQNNFQTGEIYEISHELLVLIDEFRELLDRLFSWCDLCLPANEQAFAESHRQKIQKFQVQI---------------VQEMKRSNGAR----SQEVNKDNLEAWEKAHHDLL 309
            +VF FF+ +I +  ++QT +++++S E+L ++DE RELL+ L +WCDLCLPANE AFAE+ R KIQ FQ  +               +Q  KR+   +    +++V  +N   W KAH DLL
Sbjct:   69 KVFAFFDANITEATSYQTDQVFKLSEEVLSVLDECRELLELLMNWCDLCLPANETAFAEALRIKIQDFQEYLSGGVTGLANSTNEVNLQLEKRARTLQLLFTTKDVLPENRAGWIKAHRDLL 190
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig94992.18953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LE75_ECTSI5.280e-5783.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CFQ5_9STRA1.300e-4261.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G572_ECTSI2.150e-2043.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YMR0_9STRA4.100e-2040.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LEA5_ECTSI1.460e-1840.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C7X8_9STRA1.560e-1740.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig94992contigF-distichus_contig94992:71..1698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_001190.1
Exons4
Model size318
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig94992.18953.1prot_F-distichus_contig94992.18953.1Fucus distichus monoicouspolypeptideF-distichus_contig94992 71..1698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931125.6445239-CDS-F-distichus_contig94992:70..1331622931125.6445239-CDS-F-distichus_contig94992:70..133Fucus distichus monoicousCDSF-distichus_contig94992 71..133 -
1690886169.0161045-CDS-F-distichus_contig94992:70..1331690886169.0161045-CDS-F-distichus_contig94992:70..133Fucus distichus monoicousCDSF-distichus_contig94992 71..133 -
1622931125.6634336-CDS-F-distichus_contig94992:680..8351622931125.6634336-CDS-F-distichus_contig94992:680..835Fucus distichus monoicousCDSF-distichus_contig94992 681..835 -
1690886169.0261683-CDS-F-distichus_contig94992:680..8351690886169.0261683-CDS-F-distichus_contig94992:680..835Fucus distichus monoicousCDSF-distichus_contig94992 681..835 -
1622931125.6826715-CDS-F-distichus_contig94992:1206..12621622931125.6826715-CDS-F-distichus_contig94992:1206..1262Fucus distichus monoicousCDSF-distichus_contig94992 1207..1262 -
1690886169.0349557-CDS-F-distichus_contig94992:1206..12621690886169.0349557-CDS-F-distichus_contig94992:1206..1262Fucus distichus monoicousCDSF-distichus_contig94992 1207..1262 -
1622931125.6953127-CDS-F-distichus_contig94992:1654..16981622931125.6953127-CDS-F-distichus_contig94992:1654..1698Fucus distichus monoicousCDSF-distichus_contig94992 1655..1698 -
1690886169.0457385-CDS-F-distichus_contig94992:1654..16981690886169.0457385-CDS-F-distichus_contig94992:1654..1698Fucus distichus monoicousCDSF-distichus_contig94992 1655..1698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig94992.18953.1

>prot_F-distichus_contig94992.18953.1 ID=prot_F-distichus_contig94992.18953.1|Name=mRNA_F-distichus_contig94992.18953.1|organism=Fucus distichus monoicous|type=polypeptide|length=106bp
QVFEFFNNSINKQNNFQTGEIYEISHELLVLIDEFRELLDRLFSWCDLCL
PANEQAFAESHRQKIQKFQVQIVQEMKRSNGARSQEVNKDNLEAWEKAHH
DLLTLQ
back to top

mRNA from alignment at F-distichus_contig94992:71..1698-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig94992.18953.1 ID=mRNA_F-distichus_contig94992.18953.1|Name=mRNA_F-distichus_contig94992.18953.1|organism=Fucus distichus monoicous|type=mRNA|length=1628bp|location=Sequence derived from alignment at F-distichus_contig94992:71..1698- (Fucus distichus monoicous)
CAGGTATTCGAGTTCTTCAACAATTCCATCAACAAACAGAACAAGTGAGT
TCGATTTTACGAACACTCTTTCGTGCGGCCGCCTTACTGGCGAGGTGCTG
AGCGTCTTGCAAGCGATCCACGAACGTCGAACACCTTGTTACGTCTACTT
ACTACAGTATGACTTCTTGTTCGAGATCCCCAAGTAGCGAGGAGCCTATT
GTGTATCGCGTGCTTTGCGCCATTTCTCCCCTGCGTTTTCATTTTTCTCC
CTGCTTGCAACACTATGCTTGCAGCGGTATCGCTATCTTTAGCACTACCG
ACAGTATGGCTGGGAACAACCCTGCAAGGAGACGATACTGTACGGCATTT
CCGAACAGACTGCGTTCAACCGCTCACTCTCTTATCGCCCGCAATAACTC
GTACACTTGCCCTTTAACCGATCTTTGCAACTCCAGCTTTCAGACGGGCG
AGATATACGAAATTTCCCACGAGCTGCTGGTTCTCATTGACGGTGAGGCG
GCCCTGGCTTGTCCACAATTTGTCAATCTCGCGAGGCGCAAGCGCAAGCG
TCCGTCCTCTTCATCATCGTTTACCCGCGCCCCGGTGCCACCTAAGCTCT
TCATAAATCTATCACAAGCTGGTGAAACATTGTGGGGCTTCAGTATCGGG
CGGCTCTTTGCCTCTCTCTGAGCGAAACGCTGGACCTCCTCTGCGCAGTC
ATGAGTCCTCGACAGGAATCGCCGCCCTTTCCCCGCTTATATAAAAGAAT
CTTCGACTTCGTTCTTTCCGCTCCTCCCCCACGCCGACTTTACCACCCGT
TTTTTCCCCCCCGTTCGATGACTGTCGCCGCTTATCTTGTGCCTATCAAA
TCTGCTTGTGCAGAGTTTCGTGAGTTATTGGACAGGCTGTTCTCGTGGTG
CGACTTGTGCCTGCCGGCGAACGAGCAGGCGTTCGCGGAGTCGCACCGGC
AAAAGATCCAAAAATTCCAGGTCCAGATCGTGCAAGAGATGAAGCGATCC
AACGGCGCTCGCTCTCAGGTATCGCCGCCTCGTTCGACGTGTCGGAGCGA
TCTTACGAATTCTGTTGAAGTTCCCTTTTTTGTCCTGTAAAAGAGTGTAT
TTTTATGTTGCGTATTTGCCGATCGATATCGTGCGTTATTTTGTTTTTAC
TGCGTTTCTCGTCAGCGCGAAAAATGTAGCTGCGCACGCAACGGCGCGTT
TGAAACCACCCTCCCGCGGATGCCATAGGGTAGCGCGAAAGGGTAGTGGC
GGCTCCTGAGTCAAGGGATTCGCGATCGTGATAACTGCTTGACTTAACTC
GCGTGCCGTGTGCGACCTGACTCTCGCAAGGTGAACTCCCACTTGACCGT
GAGGGTGGAAACCTTGAGGCACATGTTCTCAACGAAGGTGAGGAGAAATG
ATTCCATTCACTGGCGGACTGACATTCTGCGATAGAGTTTACTTTACTCC
AGTTGTTGTACCCGTATGTTGGCCCTCTTAATAGTAGTTAAAATAAGTCT
TGTGTCTGGTCGGTGTGGGTGCGTGCTACTCTCGAAACGGTTATGCGCGC
GCTCGTTTTCCTCAGGAGGTAAACAAAGACAACCTGGAGGCCTGGGAGAA
AGCCCACCATGACTTGCTCACGTTGCAG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig94992:71..1698-

>mRNA_F-distichus_contig94992.18953.1 ID=mRNA_F-distichus_contig94992.18953.1|Name=mRNA_F-distichus_contig94992.18953.1|organism=Fucus distichus monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at F-distichus_contig94992:71..1698- (Fucus distichus monoicous)
CAGGTATTCGAGTTCTTCAACAATTCCATCAACAAACAGAACAACAGGTA
TTCGAGTTCTTCAACAATTCCATCAACAAACAGAACAACTTTCAGACGGG
CGAGATATACGAAATTTCCCACGAGCTGCTGGTTCTCATTGACGCTTTCA
GACGGGCGAGATATACGAAATTTCCCACGAGCTGCTGGTTCTCATTGACG
AGTTTCGTGAGTTATTGGACAGGCTGTTCTCGTGGTGCGACTTGTGCCTG
CCGGCGAACGAGCAGGCGTTCGCGGAGTCGCACCGGCAAAAGATCCAAAA
ATTCCAGGTCCAGATCGTGCAAGAGATGAAGCGATCCAACGGCGCTCGCT
CTCAGAGTTTCGTGAGTTATTGGACAGGCTGTTCTCGTGGTGCGACTTGT
GCCTGCCGGCGAACGAGCAGGCGTTCGCGGAGTCGCACCGGCAAAAGATC
CAAAAATTCCAGGTCCAGATCGTGCAAGAGATGAAGCGATCCAACGGCGC
TCGCTCTCAGGAGGTAAACAAAGACAACCTGGAGGCCTGGGAGAAAGCCC
ACCATGACTTGCTCACGTTGCAGGAGGTAAACAAAGACAACCTGGAGGCC
TGGGAGAAAGCCCACCATGACTTGCTCACGTTGCAG
back to top