mRNA_F-distichus_contig94965.18949.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig94965.18949.1
Unique NamemRNA_F-distichus_contig94965.18949.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig94965.18949.1 vs. uniprot
Match: D8LPR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR0_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.490e-21
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 GGEAVFIPKKPDDDVLGGIGEEDDGFLVTFRRADTRNMSELRVWNAKTLDAKPVARVKLPTRVPLGFHALFVSEAELSVQ 240
            GGE +F+P  PD     G+G+EDDGFLVTF        SELRVW+AKT+   PVA VKLP RVPLGFHA+ ++EA+L+ Q
Sbjct:  449 GGEGLFVPSNPD-----GVGDEDDGFLVTFVSPKDGGNSELRVWDAKTMSPDPVASVKLPARVPLGFHAIHITEADLATQ 523
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BLAST of mRNA_F-distichus_contig94965.18949.1 vs. uniprot
Match: D8LGA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA3_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.930e-21
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:    1 GGEAVFIPKKPDDDVLGG--IGEEDDGFLVTF-RRADTRNMSELRVWNAKTLDAKPVARVKLPTRVPLGFHALFVSEAELSVQK 243
            GGE +FIP KPDD    G   G EDDG+L TF  R D    SELRV++AKT++++PVA VKLP RVP GFHA+FV EAEL+ Q+
Sbjct:  458 GGECIFIPSKPDDGDGDGELAGGEDDGYLATFVSRKDGTGTSELRVFDAKTMNSEPVAAVKLPARVPAGFHAIFVPEAELATQR 541
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BLAST of mRNA_F-distichus_contig94965.18949.1 vs. uniprot
Match: D8LGA2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA2_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 4.890e-20
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:    1 GGEAVFIPKKPDD--------DVLGGI-GEEDDGFLVTF-RRADTRNMSELRVWNAKTLDAKPVARVKLPTRVPLGFHALFVSEAELSVQK 243
            GGE +FIP KPDD        D  G + G EDDG+L TF  R D    SELRV+NAKT+ ++PVA VKLP RVP GFHA+FVSEA+L+ Q+
Sbjct:  457 GGECIFIPSKPDDHAGHDGDSDSDGELEGGEDDGYLATFVSRKDGTGNSELRVFNAKTMSSEPVAIVKLPARVPAGFHAIFVSEADLAKQQ 547
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BLAST of mRNA_F-distichus_contig94965.18949.1 vs. uniprot
Match: A0A139AG79_GONPJ (Carotenoid oxygenase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AG79_GONPJ)

HSP 1 Score: 85.9 bits (211), Expect = 1.010e-17
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    1 GGEAVFIPKKPDDDVLGGIGE-EDDGFLVTFRRADTRNMSELRVWNAKTLDAKPVARVKLPTRVPLGFHALFVSEAELSVQK 243
            GGEAVF+P+K     L G  E EDDGFLV F R +    SEL V++AK++DAKPVAR+ LP RVP GFH L+V++ ++  Q+
Sbjct:  447 GGEAVFVPRKTS---LSGTEEVEDDGFLVVFVRNEEAETSELHVYDAKSMDAKPVARITLPHRVPFGFHGLWVTQEQIEKQR 525
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BLAST of mRNA_F-distichus_contig94965.18949.1 vs. uniprot
Match: A0A804II93_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804II93_MUSAM)

HSP 1 Score: 80.1 bits (196), Expect = 1.080e-15
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 GGEAVFIPKKPDDDVLGGIGEEDDGFLVTFRRADTRNMSELRVWNAKTLDAKPVARVKLPTRVPLGFHALFVSEAELSVQ 240
            G EAVF+P KP     G   EEDDG+L+ F   +    SE+ V +AKT+ A PVA V+LPTRVP GFHA FV+E +L  Q
Sbjct:  470 GSEAVFVPHKP-----GFSSEEDDGYLIFFVHDENTGKSEVNVIDAKTMSADPVAVVELPTRVPYGFHAFFVTEEQLQRQ 544
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BLAST of mRNA_F-distichus_contig94965.18949.1 vs. uniprot
Match: A0A1D1ZCR7_9ARAE (Carotenoid 9,10(9',10')-cleavage dioxygenase n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZCR7_9ARAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.080e-15
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    1 GGEAVFIPKKPDDDVLGGIGEEDDGFLVTFRRADTRNMSELRVWNAKTLDAKPVARVKLPTRVPLGFHALFVSEAELSVQ 240
            G EAVF+P+KP     G   +EDDG+L+ F   D    SE+ V +AKT+ A PVA V+LP+RVP GFHA FV+E +L  Q
Sbjct:  479 GSEAVFVPRKP-----GVCSDEDDGYLIFFVHDDNTGKSEVNVIDAKTMSADPVAVVELPSRVPHGFHAFFVTEEQLKQQ 553
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BLAST of mRNA_F-distichus_contig94965.18949.1 vs. uniprot
Match: A0A0N7CLN0_9ASPA (Carotenoid cleavage dioxygenase n=3 Tax=Crocus TaxID=58949 RepID=A0A0N7CLN0_9ASPA)

HSP 1 Score: 79.7 bits (195), Expect = 1.490e-15
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    1 GGEAVFIPKKPDDDVLGGIGEEDDGFLVTFRRADTRNMSELRVWNAKTLDAKPVARVKLPTRVPLGFHALFVSEAELSVQKLE 249
            G EA+F+P +P     G   +EDDG+L+ F   +    SE+ V NAKT+ A+PVA V+LP+RVP GFHALF++E EL   + E
Sbjct:  513 GSEAIFVPCQP-----GITSDEDDGYLIFFVHDENNGKSEVNVINAKTMSAEPVAVVELPSRVPYGFHALFLNEEELQKHQAE 590
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BLAST of mRNA_F-distichus_contig94965.18949.1 vs. uniprot
Match: A0A7C9EI78_OPUST (9-cis-epoxycarotenoid dioxygenase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EI78_OPUST)

HSP 1 Score: 75.9 bits (185), Expect = 1.950e-15
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 GGEAVFIPKKPDDDVLGGIGEEDDGFLVTFRRADTRNMSELRVWNAKTLDAKPVARVKLPTRVPLGFHALFVSEAELSVQ 240
            G EA+F+P++PD        EEDDGFL+ F   +    S + V +AKT+ A PVA V+LP+RVP GFHA FV+E +L  Q
Sbjct:   89 GSEAIFVPREPDTAT-----EEDDGFLIFFVHDENIGKSFVNVIDAKTMSADPVAVVELPSRVPYGFHAFFVTEEQLKDQ 163
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BLAST of mRNA_F-distichus_contig94965.18949.1 vs. uniprot
Match: A0A0C9QLD5_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_28436_2071 transcribed RNA sequence n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9QLD5_9SPER)

HSP 1 Score: 79.3 bits (194), Expect = 2.010e-15
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    1 GGEAVFIPKKPDDDVLGGIGEEDDGFLVTFRRADTRNMSELRVWNAKTLDAKPVARVKLPTRVPLGFHALFVSEAELSVQ 240
            G EA+F+P+  D ++     EEDDG+L+ F   +    SE+ V++AKT+  +PVA V LPTRVP GFHA FVSE +L  Q
Sbjct:  462 GSEAIFVPRDSDSNL-----EEDDGYLICFVHDENTRKSEVNVFDAKTMSPEPVAIVHLPTRVPYGFHAFFVSEEQLQNQ 536
[Close]
BLAST of mRNA_F-distichus_contig94965.18949.1 vs. uniprot
Match: A0A8J9WKN2_9CHLO (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WKN2_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 2.720e-15
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:    1 GGEAVFIPKKPDDDVLGGIGEEDDGFLVTFRRADTRNMSELRVWNAKTLDAKPVARVKLPTRVPLGFHALFVSEAELSVQ 240
            GGEAVF+P  PD   L G   EDDG+L T+   + +N SE  V++A +  A+PVARVKLP RVP GFH   ++ A+   Q
Sbjct:  425 GGEAVFVPSSPDPSALKG---EDDGYLATYVYDEAKNSSEFVVYDACSFSAEPVARVKLPQRVPFGFHGKHINVAQFQAQ 501
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig94965.18949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPR0_ECTSI1.490e-2157.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGA3_ECTSI3.930e-2159.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGA2_ECTSI4.890e-2057.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A139AG79_GONPJ1.010e-1753.66Carotenoid oxygenase n=1 Tax=Gonapodya prolifera (... [more]
A0A804II93_MUSAM1.080e-1552.50(wild Malaysian banana) hypothetical protein n=1 T... [more]
A0A1D1ZCR7_9ARAE1.080e-1551.25Carotenoid 9,10(9',10')-cleavage dioxygenase n=1 T... [more]
A0A0N7CLN0_9ASPA1.490e-1548.19Carotenoid cleavage dioxygenase n=3 Tax=Crocus Tax... [more]
A0A7C9EI78_OPUST1.950e-1548.759-cis-epoxycarotenoid dioxygenase n=1 Tax=Opuntia ... [more]
A0A0C9QLD5_9SPER2.010e-1548.75TSA: Wollemia nobilis Ref_Wollemi_Transcript_28436... [more]
A0A8J9WKN2_9CHLO2.720e-1548.75Carotenoid 9,10(9',10')-cleavage dioxygenase 1 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig94965contigF-distichus_contig94965:156..738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue8.6e-19
Seed eggNOG ortholog2880.D8LPR0
Preferred nameCCD1
KEGG koko:K00465,ko:K11159
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005911,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008300,GO:0009056,GO:0009506,GO:0009987,GO:0010436,GO:0012505,GO:0016020,GO:0016042,GO:0016108,GO:0016110,GO:0016115,GO:0016116,GO:0016118,GO:0016119,GO:0016121,GO:0016122,GO:0016124,GO:0016491,GO:0016701,GO:0016702,GO:0030054,GO:0031090,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045549,GO:0046247,GO:0051213,GO:0055044,GO:0055114,GO:0071704,GO:0071944,GO:0098588,GO:0098805,GO:1901575
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGsCOG3670@1,KOG1285@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons3
Model size252
Cds size252
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig94965.18949.1prot_F-distichus_contig94965.18949.1Fucus distichus monoicouspolypeptideF-distichus_contig94965 156..738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931125.2901404-CDS-F-distichus_contig94965:155..2891622931125.2901404-CDS-F-distichus_contig94965:155..289Fucus distichus monoicousCDSF-distichus_contig94965 156..289 -
1690886168.863561-CDS-F-distichus_contig94965:155..2891690886168.863561-CDS-F-distichus_contig94965:155..289Fucus distichus monoicousCDSF-distichus_contig94965 156..289 -
1622931125.3165147-CDS-F-distichus_contig94965:579..6071622931125.3165147-CDS-F-distichus_contig94965:579..607Fucus distichus monoicousCDSF-distichus_contig94965 580..607 -
1690886168.878016-CDS-F-distichus_contig94965:579..6071690886168.878016-CDS-F-distichus_contig94965:579..607Fucus distichus monoicousCDSF-distichus_contig94965 580..607 -
1622931125.3355188-CDS-F-distichus_contig94965:648..7381622931125.3355188-CDS-F-distichus_contig94965:648..738Fucus distichus monoicousCDSF-distichus_contig94965 649..738 -
1690886168.894174-CDS-F-distichus_contig94965:648..7381690886168.894174-CDS-F-distichus_contig94965:648..738Fucus distichus monoicousCDSF-distichus_contig94965 649..738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig94965.18949.1

>prot_F-distichus_contig94965.18949.1 ID=prot_F-distichus_contig94965.18949.1|Name=mRNA_F-distichus_contig94965.18949.1|organism=Fucus distichus monoicous|type=polypeptide|length=84bp
GGEAVFIPKKPDDDVLGGIGEEDDGFLVTFRRADTRNMSELRVWNAKTLD
AKPVARVKLPTRVPLGFHALFVSEAELSVQKLE*
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mRNA from alignment at F-distichus_contig94965:156..738-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig94965.18949.1 ID=mRNA_F-distichus_contig94965.18949.1|Name=mRNA_F-distichus_contig94965.18949.1|organism=Fucus distichus monoicous|type=mRNA|length=583bp|location=Sequence derived from alignment at F-distichus_contig94965:156..738- (Fucus distichus monoicous)
GGAGGCGAGGCTGTCTTCATCCCTAAAAAGCCCGACGACGATGTGCTCGG
CGGAATCGGCGAGGAGGACGATGGCTTCTTGGTGACGTTCGTCAGCCCCA
AGGACGGCGGCAATTCAGGCAAGCGAGCGAGCGGCGGGCCGATACAAGAA
ATATGTCGGGTGTCCTGTGTGATTCGAGAGCCGCTGGCAACCGTAAAATA
TACACCTCCATTCGACGGCAGGCTGTGGAACCTCCTCTTGAGTACATGAG
TACACAATCTCGGTGGTTTCAATGAGGACCCACACAAACGAGAAGTATGG
TACTGTAGATTGATAATAACAGAGGGTGTTTTTTCTATCTTGTAGCTACA
GCAGCGAGAGCTCATTGTCGATACGCGAAACACCCCCTTCGAGGCCCATG
CAATAATCCCCCTCCTCCCCCCTCCATGCTCGTAAACAAATAATGTCAGA
ACTGCGGGTGTGGAATGCCAAAACGTTGGATGCGAAACCAGTGGCTCGAG
TGAAGCTTCCCACGAGGGTCCCGCTTGGATTCCACGCCCTCTTCGTGAGC
GAGGCTGAGCTCTCTGTACAGAAGCTAGAGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig94965:156..738-

>mRNA_F-distichus_contig94965.18949.1 ID=mRNA_F-distichus_contig94965.18949.1|Name=mRNA_F-distichus_contig94965.18949.1|organism=Fucus distichus monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at F-distichus_contig94965:156..738- (Fucus distichus monoicous)
GGAGGCGAGGCTGTCTTCATCCCTAAAAAGCCCGACGACGATGTGCTCGG
CGGAATCGGCGAGGAGGACGATGGCTTCTTGGTGACGTTCGGAGGCGAGG
CTGTCTTCATCCCTAAAAAGCCCGACGACGATGTGCTCGGCGGAATCGGC
GAGGAGGACGATGGCTTCTTGGTGACGTTCCGGCGGGCCGATACAAGAAA
TATGTCGGCGGCGGGCCGATACAAGAAATATGTCGGAACTGCGGGTGTGG
AATGCCAAAACGTTGGATGCGAAACCAGTGGCTCGAGTGAAGCTTCCCAC
GAGGGTCCCGCTTGGATTCCACGCCCTCTTCGTGAGCGAGGCTGAGCTCT
CTGTACAGAAGCTAGAGTGAAACTGCGGGTGTGGAATGCCAAAACGTTGG
ATGCGAAACCAGTGGCTCGAGTGAAGCTTCCCACGAGGGTCCCGCTTGGA
TTCCACGCCCTCTTCGTGAGCGAGGCTGAGCTCTCTGTACAGAAGCTAGA
GTGA
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