mRNA_F-distichus_contig101251.97.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101251.97.1
Unique NamemRNA_F-distichus_contig101251.97.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101251.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101251contigF-distichus_contig101251:2..896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size679
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101251.97.1prot_F-distichus_contig101251.97.1Fucus distichus monoicouspolypeptideF-distichus_contig101251 139..873 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.6450922-UTR-F-distichus_contig101251:1..1381622928928.6450922-UTR-F-distichus_contig101251:1..138Fucus distichus monoicousUTRF-distichus_contig101251 2..138 -
1690885070.227256-UTR-F-distichus_contig101251:1..1381690885070.227256-UTR-F-distichus_contig101251:1..138Fucus distichus monoicousUTRF-distichus_contig101251 2..138 -
1622928928.7071419-UTR-F-distichus_contig101251:873..8961622928928.7071419-UTR-F-distichus_contig101251:873..896Fucus distichus monoicousUTRF-distichus_contig101251 874..896 -
1690885070.2704437-UTR-F-distichus_contig101251:873..8961690885070.2704437-UTR-F-distichus_contig101251:873..896Fucus distichus monoicousUTRF-distichus_contig101251 874..896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.6588593-CDS-F-distichus_contig101251:138..1591622928928.6588593-CDS-F-distichus_contig101251:138..159Fucus distichus monoicousCDSF-distichus_contig101251 139..159 -
1690885070.2396317-CDS-F-distichus_contig101251:138..1591690885070.2396317-CDS-F-distichus_contig101251:138..159Fucus distichus monoicousCDSF-distichus_contig101251 139..159 -
1622928928.688212-CDS-F-distichus_contig101251:375..8731622928928.688212-CDS-F-distichus_contig101251:375..873Fucus distichus monoicousCDSF-distichus_contig101251 376..873 -
1690885070.2481124-CDS-F-distichus_contig101251:375..8731690885070.2481124-CDS-F-distichus_contig101251:375..873Fucus distichus monoicousCDSF-distichus_contig101251 376..873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101251.97.1

>prot_F-distichus_contig101251.97.1 ID=prot_F-distichus_contig101251.97.1|Name=mRNA_F-distichus_contig101251.97.1|organism=Fucus distichus monoicous|type=polypeptide|length=173bp
MAVHSHKRYDEGNGASPLFAARAGYNSSRGLPASSPPLSTPTPATPRRTG
GAQDDNEQCWEDWDYRQHIAVGRHKRYDDRSEASWWRGESDGNWTACPSP
PSVPRSPVQDYLGRGMRETHASRWRNPFLPSAGSMRSTQARGLPAETTFA
VLPRWNLRSVRTIGTQTPDWMI*
back to top

mRNA from alignment at F-distichus_contig101251:2..896-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101251.97.1 ID=mRNA_F-distichus_contig101251.97.1|Name=mRNA_F-distichus_contig101251.97.1|organism=Fucus distichus monoicous|type=mRNA|length=895bp|location=Sequence derived from alignment at F-distichus_contig101251:2..896- (Fucus distichus monoicous)
AAGATTGGGATTATCGTCAGCACATGGCTGTTCATAGCCACAAAAGATAC
GATGAGGGGAATGGAGCTTCACCCCTCTTTGCGGCAAGGGCTGGCTACAA
TAGTAGCAGAGGCCTTCCCGCTTCAAGCCCACCTTTATCAACACCGACAC
CCGCGACTCCGCGCCGAACAGGGGGAGCCCAAGATGACAACGAGCAATGC
TGGGAAGATTGGGATTATCGTCAGCACATAGCTGTTGGCAGACACAAGAG
ATACGATGACAGGAGTGAAGCTTCGTGGTGGCGAGGAGAATCGGACGGTA
ATTGGACAGCGTGTCCATCTCCTCCCTCAGTCCCCCGCTCTCCGGTGCAG
GACTACCTCGGCCGTGGAATGCGCGAGACGCACGCGTCAAGGTGGCGAAA
TCCATTTCTACCATCTGCTGGTTCGATGCGTAGTACGCAGGCCAGAGGAC
TTCCCGCCGAGACAACGTTTGCCGTCCTTCCGAGGTGGAATCTGCGCTCT
GTGCGGACGATCGGGACACAGGTATGATCGTTGTTTAAACAGTAGCTTCG
TTGATCGAATCACGGTAAAATACCAATGAAAGGCCGTGTTGCGATGCTGC
GTTACTACTCCAATCCACGACATTGGTCTTGACCGGCGATGTTTTCCCCC
TTCCTCTGACGCGCGTGATCCCCTCCCTTGTTTCCTTCTGTCGGCGCATG
ATGTTCCGGCGGAATCGCTGTCACTTCTTTCGCGCAGACACCTGACTGGA
TGATTTGACTTGAATTGTCACGGCGAGGTGGCTCCGAATACTCGCGTCGT
CTCCGATCGATACCTTTTGTACAAACGGAGGAGAGGTATCGTACCGTGTA
TATTTTCCCTCTCCTGCTATTAATACCTGTAAGAAAATCTCCACA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig101251:2..896-

>mRNA_F-distichus_contig101251.97.1 ID=mRNA_F-distichus_contig101251.97.1|Name=mRNA_F-distichus_contig101251.97.1|organism=Fucus distichus monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at F-distichus_contig101251:2..896- (Fucus distichus monoicous)
ATGGCTGTTCATAGCCACAAAAGATACGATGAGGGGAATGGAGCTTCACC
CCTCTTTGCGGCAAGGGCTGGCTACAATAGTAGCAGAGGCCTTCCCGCTT
CAAGCCCACCTTTATCAACACCGACACCCGCGACTCCGCGCCGAACAGGG
GGAGCCCAAGATGACAACGAGCAATGCTGGGAAGATTGGGATTATCGTCA
GCACATAGCTGTTGGCAGACACAAGAGATACGATGACAGGAGTGAAGCTT
CGTGGTGGCGAGGAGAATCGGACGGTAATTGGACAGCGTGTCCATCTCCT
CCCTCAGTCCCCCGCTCTCCGGTGCAGGACTACCTCGGCCGTGGAATGCG
CGAGACGCACGCGTCAAGGTGGCGAAATCCATTTCTACCATCTGCTGGTT
CGATGCGTAGTACGCAGGCCAGAGGACTTCCCGCCGAGACAACGTTTGCC
GTCCTTCCGAGGTGGAATCTGCGCTCTGTGCGGACGATCGGGACACAGAT
GGCTGTTCATAGCCACAAAAGATACGATGAGGGGAATGGAGCTTCACCCC
TCTTTGCGGCAAGGGCTGGCTACAATAGTAGCAGAGGCCTTCCCGCTTCA
AGCCCACCTTTATCAACACCGACACCCGCGACTCCGCGCCGAACAGGGGG
AGCCCAAGATGACAACGAGCAATGCTGGGAAGATTGGGATTATCGTCAGC
ACATAGCTGTTGGCAGACACAAGAGATACGATGACAGGAGTGAAGCTTCG
TGGTGGCGAGGAGAATCGGACGGTAATTGGACAGCGTGTCCATCTCCTCC
CTCAGTCCCCCGCTCTCCGGTGCAGGACTACCTCGGCCGTGGAATGCGCG
AGACGCACGCGTCAAGGTGGCGAAATCCATTTCTACCATCTGCTGGTTCG
ATGCGTAGTACGCAGGCCAGAGGACTTCCCGCCGAGACAACGTTTGCCGT
CCTTCCGAGGTGGAATCTGCGCTCTGTGCGGACGATCGGGACACAGACAC
CTGACTGGATGATTTGAACACCTGACTGGATGATTTGA
back to top