mRNA_F-distichus_contig107847.672.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107847.672.1
Unique NamemRNA_F-distichus_contig107847.672.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig107847.672.1 vs. uniprot
Match: D8LCP7_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP7_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 6.220e-60
Identity = 110/178 (61.80%), Postives = 130/178 (73.03%), Query Frame = 1 
Query:    4 SSPQRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFMYYFESKDSEVPRGVIDMEAYTDIGVEESTGAIVLGPGPD---APPGFRKYYFRPEEGRHTRFRHSSRSSGGGEGSDGGAVIDDVELPFGEDEDVLEGDGDGGGLLGEWLSGFHRDRFKVVRDERDAYMNLQVQLSS 528
            SSP RTAAEMTKLSVRRGWM K+N+Q AWQRRYCCLVPHTF+YYFESKD+EVPRGVID++ YT+IGV++ TGAIVLGPG     A  G RK+YF+PEE R  R      ++ GG G++G                  +GDG GG +LGEWLSG HR+R+KVVRDERDAYMNLQ +  S
Sbjct:   91 SSPPRTAAEMTKLSVRRGWMFKKNKQGAWQRRYCCLVPHTFLYYFESKDAEVPRGVIDLDPYTNIGVDQRTGAIVLGPGGSWTVAGQGLRKFYFKPEERRMMRT-----TAAGGAGANGXXXXXXXXXXXXXXV-AKKGDGGGGEVLGEWLSGLHRERYKVVRDERDAYMNLQEEYMS 262
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BLAST of mRNA_F-distichus_contig107847.672.1 vs. uniprot
Match: A0A6H5JHM0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM0_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 6.780e-58
Identity = 109/178 (61.24%), Postives = 130/178 (73.03%), Query Frame = 1 
Query:    4 SSPQRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFMYYFESKDSEVPRGVIDMEAYTDIGVEESTGAIVLGPGPD---APPGFRKYYFRPEEGRHTRFRHSSRSSGGGEGSDGGAVIDDVELPFGEDEDVLEGDGDGGGLLGEWLSGFHRDRFKVVRDERDAYMNLQVQLSS 528
            SSP RTAAEMTKLSVRRGWM K+N+Q AWQRRYCCLVPHTF+YYFESKD+EVPRGVID++ YT+IGV++ TGAIVLGPG     A  G RK+YF+PEE R  R      ++  G G++  AV               +GDG GG ++GEWLSG HR+R+KVVRDERDAYMNLQ +  S
Sbjct:   96 SSPPRTAAEMTKLSVRRGWMFKKNKQGAWQRRYCCLVPHTFLYYFESKDAEVPRGVIDLDPYTNIGVDQRTGAIVLGPGGSWTAAGQGLRKFYFKPEERRVMRA-----TAADGAGANVTAVAXXXXXXXXXXV-AKKGDGVGGEVVGEWLSGLHRERYKVVRDERDAYMNLQEEYMS 267
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BLAST of mRNA_F-distichus_contig107847.672.1 vs. uniprot
Match: A0A835Z0T3_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.600e-24
Identity = 49/95 (51.58%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    4 SSPQRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFMYYFESKDSEVPRGVIDMEAYTDIGVEES-TGAIVLGPGPDAPPGFRKYYFRPE 285
            SSP R A    +L VR GW+LKRNEQR WQ R+C +VPHT++YYFES++S  PRG+ID+E Y++I  +++ +  +VL P  D   G R +YFR E
Sbjct:   34 SSPLRDAQTTKRLGVRSGWLLKRNEQRVWQPRFCVMVPHTYLYYFESENSAAPRGIIDLEPYSEIAAQQNDSSVVVLAPANDGGAGLRTFYFRAE 128
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BLAST of mRNA_F-distichus_contig107847.672.1 vs. uniprot
Match: A0A7R9U5P2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5P2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.930e-19
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   19 TAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFMYYFESKDSEVPRGVIDMEAYTDIGVEES-TGAIVLGPGPDAPPGFRKYYFR 279
            TA  +++ S+  G++ KRNEQ  WQRRYC +VPH+F+YYFES+ +E PRGVID+EAY +  VEE   G  +L        G R ++FR
Sbjct:   65 TAPTLSQQSIHCGYLEKRNEQGQWQRRYCIMVPHSFLYYFESETAETPRGVIDLEAYHNCSVEEGDNGGKLLTVAASEASGLRTFFFR 152
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BLAST of mRNA_F-distichus_contig107847.672.1 vs. uniprot
Match: A0A7S2K1M2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1M2_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.350e-14
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    4 SSPQRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFMYYFESK--DSEVPRGVIDMEAYTDIGVEEST 216
            S+P RT   MTKL+ + GW+ KRNEQ  WQ+R+CC+VPHTF+YYF+S+  D++    V D+E YT I  +E T
Sbjct:   68 SAPPRTPECMTKLASKSGWLYKRNEQNKWQKRWCCVVPHTFLYYFDSEPVDNDDDMAVYDVENYTVIHHQEDT 140
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BLAST of mRNA_F-distichus_contig107847.672.1 vs. uniprot
Match: A0A482V3Z5_9ARCH (PH domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V3Z5_9ARCH)

HSP 1 Score: 76.6 bits (187), Expect = 1.460e-14
Identity = 36/86 (41.86%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    7 SPQRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFMYYFESKDSEVPRGVIDMEAYTDIGVEESTGAIVLGPGPDAPPGFR 264
            +P + A   + L+V+ G+++KRNEQ  WQ R+ C+VPH F+YY+++   E PRGVID+E YT++  ++  G + + P  D  PG R
Sbjct:   69 TPSKDALTTSSLAVKAGYLMKRNEQGNWQNRFLCVVPHMFLYYYDTDIGEAPRGVIDLELYTNVTRDD--GILKVMPS-DEGPGLR 151
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BLAST of mRNA_F-distichus_contig107847.672.1 vs. uniprot
Match: A0A7S2K3B6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3B6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.510e-14
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    4 SSPQRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFMYYFESK--DSEVPRGVIDMEAYTDIGVEEST 216
            S+P RT   MTKL+ + GW+ KRNEQ  WQ+R+CC+VPHTF+YYF+S+  D++    V D+E YT I  +E T
Sbjct:   68 SAPPRTPECMTKLASKSGWLYKRNEQNKWQKRWCCVVPHTFLYYFDSEPVDNDDDMAVYDVENYTVIHHQEDT 140
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BLAST of mRNA_F-distichus_contig107847.672.1 vs. uniprot
Match: A0A7S4IVE8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IVE8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.660e-14
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:    4 SSPQRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFMYYFESKDSEVPRGVIDMEAYTDIGVEESTGAIVL 231
            S+P RT   MT LSV+ GW++KRNEQ  WQRR+CC+VPHTF+YYFE++      G  D     + GV     A V+
Sbjct:   47 SAPPRTPEVMTMLSVKSGWLVKRNEQHVWQRRWCCVVPHTFLYYFEAEPLMDENGDYDGSGGAEAGVGAKASAGVV 122
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BLAST of mRNA_F-distichus_contig107847.672.1 vs. uniprot
Match: A0A7S2M8C0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M8C0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.540e-13
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    4 SSPQRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFMYYFESKDSEVPRGVIDMEAYTDIGVEESTGAIVL 231
            S+P RT   M+ LS + GW++KRNEQ  WQ+R+CC+VPHTF+YYFE+          + E ++  G+  +  A+V+
Sbjct:   47 SAPPRTPEVMSMLSSKCGWLVKRNEQHVWQKRWCCVVPHTFLYYFEASPEVKTDDDGNYEVWSGGGINLNAAAVVV 122
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BLAST of mRNA_F-distichus_contig107847.672.1 vs. uniprot
Match: B5YND1_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YND1_THAPS)

HSP 1 Score: 71.2 bits (173), Expect = 3.460e-11
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    4 SSPQRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFMYYFESKDSEVPRGVIDMEAYTDIGVE-ESTGAIVLGP 237
            S+P RT   M+ LS + GW++KRNEQ  WQ+R+CC+VPHTF+YYFE+          + E ++  G+  +    +++GP
Sbjct:   47 SAPPRTPEVMSLLSSKCGWLVKRNEQHVWQKRWCCVVPHTFLYYFEASPEVKADEDGNYEGWSGGGINIKGNATVIVGP 125
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107847.672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LCP7_ECTSI6.220e-6061.80PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JHM0_9PHAE6.780e-5861.24PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A835Z0T3_9STRA3.600e-2451.58PH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7R9U5P2_9STRA1.930e-1948.86Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2K1M2_9STRA1.350e-1452.05Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A482V3Z5_9ARCH1.460e-1441.86PH domain-containing protein n=1 Tax=archaeon TaxI... [more]
A0A7S2K3B6_9STRA1.510e-1452.05Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4IVE8_9STRA4.660e-1448.68Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2M8C0_9STRA5.540e-1342.11Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
B5YND1_THAPS3.460e-1140.51Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107847contigF-distichus_contig107847:28..1748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.3
Seed ortholog evalue7.2e-49
Seed eggNOG ortholog2880.D8LCP7
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Pleckstrin homology domain.
EggNOG OGs2E9MN@1,2SFYW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size531
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107847.672.1prot_F-distichus_contig107847.672.1Fucus distichus monoicouspolypeptideF-distichus_contig107847 58..1748 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.8082097-UTR-F-distichus_contig107847:27..571622929012.8082097-UTR-F-distichus_contig107847:27..57Fucus distichus monoicousUTRF-distichus_contig107847 28..57 +
1690885106.7149746-UTR-F-distichus_contig107847:27..571690885106.7149746-UTR-F-distichus_contig107847:27..57Fucus distichus monoicousUTRF-distichus_contig107847 28..57 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.8273194-CDS-F-distichus_contig107847:57..1831622929012.8273194-CDS-F-distichus_contig107847:57..183Fucus distichus monoicousCDSF-distichus_contig107847 58..183 +
1690885106.7949972-CDS-F-distichus_contig107847:57..1831690885106.7949972-CDS-F-distichus_contig107847:57..183Fucus distichus monoicousCDSF-distichus_contig107847 58..183 +
1622929012.8444562-CDS-F-distichus_contig107847:1322..15291622929012.8444562-CDS-F-distichus_contig107847:1322..1529Fucus distichus monoicousCDSF-distichus_contig107847 1323..1529 +
1690885106.870961-CDS-F-distichus_contig107847:1322..15291690885106.870961-CDS-F-distichus_contig107847:1322..1529Fucus distichus monoicousCDSF-distichus_contig107847 1323..1529 +
1622929012.863392-CDS-F-distichus_contig107847:1580..17481622929012.863392-CDS-F-distichus_contig107847:1580..1748Fucus distichus monoicousCDSF-distichus_contig107847 1581..1748 +
1690885106.8820632-CDS-F-distichus_contig107847:1580..17481690885106.8820632-CDS-F-distichus_contig107847:1580..1748Fucus distichus monoicousCDSF-distichus_contig107847 1581..1748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107847.672.1

>prot_F-distichus_contig107847.672.1 ID=prot_F-distichus_contig107847.672.1|Name=mRNA_F-distichus_contig107847.672.1|organism=Fucus distichus monoicous|type=polypeptide|length=167bp
MTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFMYYFESKDSEVPRGVIDM
EAYTDIGVEESTGAIVLGPGPDAPPGFRKYYFRPEEGRHTRFRHSSRSSG
GGEGSDGGAVIDDVELPFGEDEDVLEGDGDGGGLLGEWLSGFHRDRFKVV
RDERDAYMNLQVQLSS*
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mRNA from alignment at F-distichus_contig107847:28..1748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107847.672.1 ID=mRNA_F-distichus_contig107847.672.1|Name=mRNA_F-distichus_contig107847.672.1|organism=Fucus distichus monoicous|type=mRNA|length=1721bp|location=Sequence derived from alignment at F-distichus_contig107847:28..1748+ (Fucus distichus monoicous)
CAGAGCTCACCCCAGCGGACGGCGGCGGAGATGACCAAGCTCTCCGTGAG
GCGCGGTTGGATGCTGAAGAGGAATGAGCAGCGGGCGTGGCAGCGCCGTT
ACTGCTGCCTCGTGCCCCACACCTTCATGTACTACTTCGAGTCCAAGGAT
TCAGAGGTAAATCATGATCCTCGTCTTATGTATACTGTAAAGTGCTAAAG
TCTGCCTATTAATAGGTCTGCCGAAAGCTACCACGCAGTAAAAGCTACCA
CACAGTAAAAGCTACCAGGTGTATCATGAGGTTCGAAAGGCTTCATAACC
TCTGAGCGTTCATTGCACCCCCCCCCCTCCCTTCCTCCCTTTGGAGTACG
TCGTGCAGTGTAGTGTATACCAGGTAGCGTATTGTATGTAGTACTTCATA
TATTGTAACTATTGTTACAGTATTTTGGCGTTGCAAGGAAGTTCGATGGC
TTTTGGGGAAGGGAAAGTAGGGGACTCCGCCCCCCCCCTCTTAAATAAGT
ACCAACATCTCGGATTTAGCTGACTTGTTTCTCTGCAGGTGGAGAGATAT
CGCTCTATAAGTGGCAGTTACATTCCTCTGTCGAGTCAACAGCCAGCCAT
CCCAGGAAACTGATAACTGGTAACTGATAAACTCCTCTAGAGCCTTGATA
TCAGTATTATATCATATTATTCAATTATTATATACTCAGTAGTATAGTAC
GCTGCTATTACTGACACCTTAGCAAGTTTGCGTCGAAAACCGAATCCGTT
CTTGTGTCTTGTCCCGACTATTGTATTATAGTATGGGTGCTTCCGGGCAC
GAGATCACTTTTAGGTTCCTTGTGTTTTTGTCCTATCCTGTCCCAAGATC
GTTAGAAAATTGATTATCAGATACTATTATAGATCATATTGGCAGCATAG
GTGCAGGATGAGTCTCGGGCACGAGATCTACAGTATTTGTTATGTCCTTG
TGTTACTGTATTAATAATAGTTACTGTATTAAAAAAAAAACAGGGACTCT
CTCTCTTGAGTAGTGCAAAAGCAATTGGTCGAACTTAAAAAAACTCGTCG
TATCTAAAAAACAAACAAACTGAAACTCTGGGAGTGGAGTTTTCTTCCCT
CGCCGCACAGCGAACTTTAGACGGGGGCTATTTACCCCTAAAGAAAACGA
GGCGTAGGGTCGGAGACGCCTCTCTCAAATACCTCAAGTGTGCCTCGGGC
ATGTAAGACGATCAAACGACTGGGGGGGGGGCGGAAAAGGGCACCAATCA
GAAAAACGAACGATCAAACGGTGTTGAACCGATCCGCGCCAGCAGGTGCC
GCGGGGCGTAATCGACATGGAGGCCTACACCGACATCGGCGTGGAAGAAA
GCACGGGGGCCATCGTCCTGGGGCCTGGTCCAGATGCTCCTCCAGGATTT
CGAAAGTATTACTTCAGGCCGGAGGAAGGCAGGCACACGAGGTTCCGGCA
TAGTTCCCGAAGCAGCGGGGGAGGCGAAGGTAGCGATGGCGGAGCAGTTA
TTGTAAGAGAAAGAGGCGGCTGTAGAAGGGGAGCCATCGGAGCTACGAGC
GAGGACGACGTGGAGTTACCGTTCGGGGAGGACGAGGATGTTTTGGAGGG
GGATGGGGATGGGGGTGGCCTTCTGGGAGAGTGGCTCTCCGGCTTTCATC
GCGACAGGTTTAAGGTGGTTAGAGACGAGAGGGACGCCTACATGAACCTT
CAGGTGCAGCTCAGCTCTTGA
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Coding sequence (CDS) from alignment at F-distichus_contig107847:28..1748+

>mRNA_F-distichus_contig107847.672.1 ID=mRNA_F-distichus_contig107847.672.1|Name=mRNA_F-distichus_contig107847.672.1|organism=Fucus distichus monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at F-distichus_contig107847:28..1748+ (Fucus distichus monoicous)
ATGACCAAGCTCTCCGTGAGGCGCGGTTGGATGCTGAAGAGGAATGAGCA
GCGGGCGTGGCAGCGCCGTTACTGCTGCCTCGTGCCCCACACCTTCATGT
ACTACTTCGAGTCCAAGGATTCAGAGATGACCAAGCTCTCCGTGAGGCGC
GGTTGGATGCTGAAGAGGAATGAGCAGCGGGCGTGGCAGCGCCGTTACTG
CTGCCTCGTGCCCCACACCTTCATGTACTACTTCGAGTCCAAGGATTCAG
AGGTGCCGCGGGGCGTAATCGACATGGAGGCCTACACCGACATCGGCGTG
GAAGAAAGCACGGGGGCCATCGTCCTGGGGCCTGGTCCAGATGCTCCTCC
AGGATTTCGAAAGTATTACTTCAGGCCGGAGGAAGGCAGGCACACGAGGT
TCCGGCATAGTTCCCGAAGCAGCGGGGGAGGCGAAGGTAGCGATGGCGGA
GCAGTTATTGTGCCGCGGGGCGTAATCGACATGGAGGCCTACACCGACAT
CGGCGTGGAAGAAAGCACGGGGGCCATCGTCCTGGGGCCTGGTCCAGATG
CTCCTCCAGGATTTCGAAAGTATTACTTCAGGCCGGAGGAAGGCAGGCAC
ACGAGGTTCCGGCATAGTTCCCGAAGCAGCGGGGGAGGCGAAGGTAGCGA
TGGCGGAGCAGTTATTGACGACGTGGAGTTACCGTTCGGGGAGGACGAGG
ATGTTTTGGAGGGGGATGGGGATGGGGGTGGCCTTCTGGGAGAGTGGCTC
TCCGGCTTTCATCGCGACAGGTTTAAGGTGGTTAGAGACGAGAGGGACGC
CTACATGAACCTTCAGGTGCAGCTCAGCTCTTGAGACGACGTGGAGTTAC
CGTTCGGGGAGGACGAGGATGTTTTGGAGGGGGATGGGGATGGGGGTGGC
CTTCTGGGAGAGTGGCTCTCCGGCTTTCATCGCGACAGGTTTAAGGTGGT
TAGAGACGAGAGGGACGCCTACATGAACCTTCAGGTGCAGCTCAGCTCTT
GA
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