mRNA_F-distichus_contig10775.656.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10775.656.1
Unique NamemRNA_F-distichus_contig10775.656.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10775.656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10775contigF-distichus_contig10775:6053..6938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size886
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10775.656.1prot_F-distichus_contig10775.656.1Fucus distichus monoicouspolypeptideF-distichus_contig10775 6110..6790 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929005.6714845-UTR-F-distichus_contig10775:6052..61091622929005.6714845-UTR-F-distichus_contig10775:6052..6109Fucus distichus monoicousUTRF-distichus_contig10775 6053..6109 +
1690885104.6065614-UTR-F-distichus_contig10775:6052..61091690885104.6065614-UTR-F-distichus_contig10775:6052..6109Fucus distichus monoicousUTRF-distichus_contig10775 6053..6109 +
1622929010.3072896-UTR-F-distichus_contig10775:6790..69381622929010.3072896-UTR-F-distichus_contig10775:6790..6938Fucus distichus monoicousUTRF-distichus_contig10775 6791..6938 +
1690885104.7459574-UTR-F-distichus_contig10775:6790..69381690885104.7459574-UTR-F-distichus_contig10775:6790..6938Fucus distichus monoicousUTRF-distichus_contig10775 6791..6938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929008.2099195-CDS-F-distichus_contig10775:6109..67901622929008.2099195-CDS-F-distichus_contig10775:6109..6790Fucus distichus monoicousCDSF-distichus_contig10775 6110..6790 +
1690885104.6149738-CDS-F-distichus_contig10775:6109..67901690885104.6149738-CDS-F-distichus_contig10775:6109..6790Fucus distichus monoicousCDSF-distichus_contig10775 6110..6790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10775.656.1

>prot_F-distichus_contig10775.656.1 ID=prot_F-distichus_contig10775.656.1|Name=mRNA_F-distichus_contig10775.656.1|organism=Fucus distichus monoicous|type=polypeptide|length=227bp
MLPQMKNQAPNVVPCLTVLSGPPARGRSTHADLDQSNWVPPLCSFDRNHQ
RARKGASLASGFPTDTYRVADRNVSPTKRQNGHADEPPVRGVIKTYVKHR
ATIVGSGSVAVLRRRALTATAVDEHAEIVRVHAPPVVRSLRRKSQYHGFA
EDPRGVLDIESAHPGGVRSLSLARSPCPTVSPVAQSPARLVLTTLRVLRG
RSVTEATGFKEQTNFRACLAPLPMRA*
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mRNA from alignment at F-distichus_contig10775:6053..6938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10775.656.1 ID=mRNA_F-distichus_contig10775.656.1|Name=mRNA_F-distichus_contig10775.656.1|organism=Fucus distichus monoicous|type=mRNA|length=886bp|location=Sequence derived from alignment at F-distichus_contig10775:6053..6938+ (Fucus distichus monoicous)
GGTAAAAGTTCCTCAAAGTTGGATCACGAAGATATCTGCGCGTTGCGTGC
CTTGGACATGCTACCTCAAATGAAAAATCAAGCACCTAACGTGGTGCCTT
GCTTAACTGTTTTGTCAGGACCGCCCGCACGTGGTCGTTCCACACACGCC
GATCTCGACCAATCCAATTGGGTGCCCCCCCTCTGTTCCTTCGACCGAAA
CCACCAACGAGCGCGGAAAGGAGCATCCCTCGCCAGCGGTTTCCCTACCG
ACACCTACCGGGTTGCCGACCGCAACGTGTCCCCCACGAAGCGGCAAAAT
GGCCACGCCGACGAGCCCCCAGTGCGCGGCGTCATCAAAACCTATGTCAA
ACACCGAGCGACGATCGTGGGAAGTGGATCGGTCGCCGTCCTCAGACGAC
GAGCCCTTACAGCCACTGCCGTAGATGAGCACGCGGAGATTGTTCGGGTA
CACGCTCCTCCTGTCGTCCGATCCCTCCGGCGCAAATCGCAATATCACGG
TTTCGCCGAAGACCCACGTGGCGTGCTCGACATTGAAAGCGCCCACCCGG
GTGGCGTCCGTTCTCTTTCCCTCGCGCGTTCGCCGTGCCCTACTGTCTCG
CCTGTAGCTCAGTCTCCTGCACGTCTCGTGCTTACAACACTCCGGGTACT
GCGCGGTCGTTCGGTGACTGAAGCAACCGGCTTTAAGGAGCAGACAAACT
TTCGTGCATGCCTTGCCCCACTTCCCATGCGAGCGTGACCCCCTGGTCGG
AAGAGAATAAAGAGCGTCGATCCTGACGACCAGGGTGGACAATGCGGTGG
ACATTCCCGCGGAATCGGGGCAGACATAGTGGTATTCTTTACTCGCTGCG
GCGGCCGCACAATAAGTGCACCTGTTTCCAGTGTTG
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Coding sequence (CDS) from alignment at F-distichus_contig10775:6053..6938+

>mRNA_F-distichus_contig10775.656.1 ID=mRNA_F-distichus_contig10775.656.1|Name=mRNA_F-distichus_contig10775.656.1|organism=Fucus distichus monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at F-distichus_contig10775:6053..6938+ (Fucus distichus monoicous)
ATGCTACCTCAAATGAAAAATCAAGCACCTAACGTGGTGCCTTGCTTAAC
TGTTTTGTCAGGACCGCCCGCACGTGGTCGTTCCACACACGCCGATCTCG
ACCAATCCAATTGGGTGCCCCCCCTCTGTTCCTTCGACCGAAACCACCAA
CGAGCGCGGAAAGGAGCATCCCTCGCCAGCGGTTTCCCTACCGACACCTA
CCGGGTTGCCGACCGCAACGTGTCCCCCACGAAGCGGCAAAATGGCCACG
CCGACGAGCCCCCAGTGCGCGGCGTCATCAAAACCTATGTCAAACACCGA
GCGACGATCGTGGGAAGTGGATCGGTCGCCGTCCTCAGACGACGAGCCCT
TACAGCCACTGCCGTAGATGAGCACGCGGAGATTGTTCGGGTACACGCTC
CTCCTGTCGTCCGATCCCTCCGGCGCAAATCGCAATATCACGGTTTCGCC
GAAGACCCACGTGGCGTGCTCGACATTGAAAGCGCCCACCCGGGTGGCGT
CCGTTCTCTTTCCCTCGCGCGTTCGCCGTGCCCTACTGTCTCGCCTGTAG
CTCAGTCTCCTGCACGTCTCGTGCTTACAACACTCCGGGTACTGCGCGGT
CGTTCGGTGACTGAAGCAACCGGCTTTAAGGAGCAGACAAACTTTCGTGC
ATGCCTTGCCCCACTTCCCATGCGAGCGTGAATGCTACCTCAAATGAAAA
ATCAAGCACCTAACGTGGTGCCTTGCTTAACTGTTTTGTCAGGACCGCCC
GCACGTGGTCGTTCCACACACGCCGATCTCGACCAATCCAATTGGGTGCC
CCCCCTCTGTTCCTTCGACCGAAACCACCAACGAGCGCGGAAAGGAGCAT
CCCTCGCCAGCGGTTTCCCTACCGACACCTACCGGGTTGCCGACCGCAAC
GTGTCCCCCACGAAGCGGCAAAATGGCCACGCCGACGAGCCCCCAGTGCG
CGGCGTCATCAAAACCTATGTCAAACACCGAGCGACGATCGTGGGAAGTG
GATCGGTCGCCGTCCTCAGACGACGAGCCCTTACAGCCACTGCCGTAGAT
GAGCACGCGGAGATTGTTCGGGTACACGCTCCTCCTGTCGTCCGATCCCT
CCGGCGCAAATCGCAATATCACGGTTTCGCCGAAGACCCACGTGGCGTGC
TCGACATTGAAAGCGCCCACCCGGGTGGCGTCCGTTCTCTTTCCCTCGCG
CGTTCGCCGTGCCCTACTGTCTCGCCTGTAGCTCAGTCTCCTGCACGTCT
CGTGCTTACAACACTCCGGGTACTGCGCGGTCGTTCGGTGACTGAAGCAA
CCGGCTTTAAGGAGCAGACAAACTTTCGTGCATGCCTTGCCCCACTTCCC
ATGCGAGCGTGA
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