mRNA_F-distichus_contig10678.579.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10678.579.1
Unique NamemRNA_F-distichus_contig10678.579.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10678.579.1 vs. uniprot
Match: A0A6H5JDS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 7.800e-15
Identity = 41/58 (70.69%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:    3 VVFKYTEAMALDLRVFSRHAKRAVIGLDDVKLLARKDAKMVEKLAAFEAA-NLNLGKK 173
            VVFK++E++ALDLRVF++H KRAV+G+DDVK  ARKD K+VEKLA FE+A NLN GKK
Sbjct:   65 VVFKFSESLALDLRVFAKHGKRAVVGVDDVKCAARKDPKLVEKLAGFESAMNLNAGKK 122
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BLAST of mRNA_F-distichus_contig10678.579.1 vs. uniprot
Match: D7FWQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ8_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 3.740e-14
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:    3 VVFKYTEAMALDLRVFSRHAKRAVIGLDDVKLLARKDAKMVEKLAAFEAA-NLNLGKK 173
            VVFK++E++ALDLRVF++H KRAV+G+DDVK  ARKD K+V KL  FE+A NLN GKK
Sbjct:   66 VVFKFSESLALDLRVFAKHGKRAVVGVDDVKCAARKDPKLVGKLVGFESAMNLNAGKK 123
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BLAST of mRNA_F-distichus_contig10678.579.1 vs. uniprot
Match: A0A7S2WNE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WNE5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.370e-7
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 3 
Query:    3 VVFKYTEAMALDLRVFSRHAKRAVIGLDDVKLLARKDAKMVEKLAAFEAANL 158
            VV KY +   +DL+ F++HAKRA +  +DVKLLARK  ++++ L AFEAANL
Sbjct:   40 VVLKYIKVAVVDLKHFAKHAKRAGVSTEDVKLLARKTPRLLQDLEAFEAANL 91
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10678.579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JDS7_9PHAE7.800e-1570.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWQ8_ECTSI3.740e-1467.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WNE5_9STRA3.370e-753.85Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10678contigF-distichus_contig10678:6645..8064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKinetochore component CENP-S
Ec32 orthologEc-21_004200.1
Exons2
Model size846
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10678.579.1prot_F-distichus_contig10678.579.1Fucus distichus monoicouspolypeptideF-distichus_contig10678 6982..8038 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.5266376-UTR-F-distichus_contig10678:6644..69811622928995.5266376-UTR-F-distichus_contig10678:6644..6981Fucus distichus monoicousUTRF-distichus_contig10678 6645..6981 -
1690885097.8549383-UTR-F-distichus_contig10678:6644..69811690885097.8549383-UTR-F-distichus_contig10678:6644..6981Fucus distichus monoicousUTRF-distichus_contig10678 6645..6981 -
1622928995.5770273-UTR-F-distichus_contig10678:8038..80641622928995.5770273-UTR-F-distichus_contig10678:8038..8064Fucus distichus monoicousUTRF-distichus_contig10678 8039..8064 -
1690885097.8805254-UTR-F-distichus_contig10678:8038..80641690885097.8805254-UTR-F-distichus_contig10678:8038..8064Fucus distichus monoicousUTRF-distichus_contig10678 8039..8064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.5450642-CDS-F-distichus_contig10678:6981..73681622928995.5450642-CDS-F-distichus_contig10678:6981..7368Fucus distichus monoicousCDSF-distichus_contig10678 6982..7368 -
1690885097.8642173-CDS-F-distichus_contig10678:6981..73681690885097.8642173-CDS-F-distichus_contig10678:6981..7368Fucus distichus monoicousCDSF-distichus_contig10678 6982..7368 -
1622928995.5633602-CDS-F-distichus_contig10678:7942..80381622928995.5633602-CDS-F-distichus_contig10678:7942..8038Fucus distichus monoicousCDSF-distichus_contig10678 7943..8038 -
1690885097.872066-CDS-F-distichus_contig10678:7942..80381690885097.872066-CDS-F-distichus_contig10678:7942..8038Fucus distichus monoicousCDSF-distichus_contig10678 7943..8038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10678.579.1

>prot_F-distichus_contig10678.579.1 ID=prot_F-distichus_contig10678.579.1|Name=mRNA_F-distichus_contig10678.579.1|organism=Fucus distichus monoicous|type=polypeptide|length=161bp
MALDLRVFSRHAKRAVIGLDDVKLLARKDAKMVEKLAAFEAANLNLGKKK
TTARKKKQQQQRQPSEVGTAEASGANTGEDRRNDDSTDARKDSKSSSVMT
TSTRNGQPQAPAVGEVENVINLLEDEDDDDDFNGGEPRGGQAAGGEEGGD
SDGSSDDLLL*
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mRNA from alignment at F-distichus_contig10678:6645..8064-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10678.579.1 ID=mRNA_F-distichus_contig10678.579.1|Name=mRNA_F-distichus_contig10678.579.1|organism=Fucus distichus monoicous|type=mRNA|length=1420bp|location=Sequence derived from alignment at F-distichus_contig10678:6645..8064- (Fucus distichus monoicous)
AGGTGGTTTTCAAATATACAGAGGCGATGGCATTGGACCTCCGCGTCTTC
TCCAGACACGCCAAAAGGGCCGTGATCGGGCTGGACGATGTCAAGTTACT
CGCGCGCAAGGATGCAAAGATGGCAAGTGTTCCTTAACTCTAACCCCTAA
CCCTTCAAATGTGCTCGTATCCTATCTTACAATAAACACCTGTCTAGAAT
TACTCGCGAAATAATATATTGCATTTTACGAAGCATAAACACCGCGGCCG
AGCGAGCGCACACGTAAATTTTGAAAGATATTCGATTGACCTGCCTTCCA
CGGCAAGCACTTCGTCGTCACGCGCCACTGCTTGAGCTTCGTAGGCAGTC
AGTCTAATGTCTCTTAATATCACGTTGGGATTAAGAAGGGAGTGTGGTGG
AAGTTACCTCGTGTATTGGTAAGGCGGACCAACACGCGCCCGGACACCCC
CGCCCCAACGAATGTTGGGTGCCAAGAATGTCGCGTACCGTAAAATAGAG
ATAGCGTTAAAAGTGCAATAGGGGTGATCTTCCTGGTTGTTTGTTGTGCG
AAGTCGCCTGCACGGACGCTGTCAAAACACCGAAAATTTGTGTGAAAACT
CCCCGCCATGGAGGATAATCCTTGCGTGTTCAAGGTGAAAAGAGGTATTC
AAGCTCGGTAGATGAGAACGGAAATGCTCTTGATACTATAAAAAAGGTGG
AAAAGCTAGCGGCGTTTGAAGCCGCGAACCTCAACCTTGGCAAGAAGAAG
ACCACCGCACGCAAGAAGAAGCAGCAGCAGCAGCGGCAGCCATCAGAGGT
AGGGACGGCCGAGGCTTCAGGCGCGAATACCGGTGAAGACCGCCGTAACG
ACGACAGCACGGACGCGCGGAAGGATTCGAAGTCGTCAAGTGTGATGACG
ACCTCGACGAGGAACGGGCAACCACAGGCACCGGCGGTGGGCGAAGTGGA
AAACGTCATAAATCTGTTGGAAGACGAGGACGATGATGACGATTTCAACG
GAGGTGAACCGCGTGGCGGTCAGGCTGCAGGGGGAGAAGAAGGCGGAGAT
AGCGATGGTAGCTCCGACGATTTGCTACTATAATCGCACTGAATTGTACG
TTCAATCGATACGTTTCCACGCCAGCTGTATAGCCGGGCTTGTTCAACTA
TCACCTTGGCCTTTCATGCTTCGGCAAAATACTTGCATCTCTTGCAGGCA
CGCCTTTCAGGTGACGGGGCTGGTTTCAGACAAGGGGATAGTGCTGTGCC
CTGCCGAGCACTTTGTGTAAGTACCTGGCATGGACATCCGTACTTGGCAG
GTTCGATTTGTGTGGTACCTTGATTCGGAGGGGCTTAGAACTTAGGTGCC
TTTTAGCGTTGTTTTGCCGTGAAACCTCGAGTCCCCCAAAATATTTATAT
ATAGGAAATAGTTGCAAATT
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Coding sequence (CDS) from alignment at F-distichus_contig10678:6645..8064-

>mRNA_F-distichus_contig10678.579.1 ID=mRNA_F-distichus_contig10678.579.1|Name=mRNA_F-distichus_contig10678.579.1|organism=Fucus distichus monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at F-distichus_contig10678:6645..8064- (Fucus distichus monoicous)
ATGGCATTGGACCTCCGCGTCTTCTCCAGACACGCCAAAAGGGCCGTGAT
CGGGCTGGACGATGTCAAGTTACTCGCGCGCAAGGATGCAAAGATGATGG
CATTGGACCTCCGCGTCTTCTCCAGACACGCCAAAAGGGCCGTGATCGGG
CTGGACGATGTCAAGTTACTCGCGCGCAAGGATGCAAAGATGGTGGAAAA
GCTAGCGGCGTTTGAAGCCGCGAACCTCAACCTTGGCAAGAAGAAGACCA
CCGCACGCAAGAAGAAGCAGCAGCAGCAGCGGCAGCCATCAGAGGTAGGG
ACGGCCGAGGCTTCAGGCGCGAATACCGGTGAAGACCGCCGTAACGACGA
CAGCACGGACGCGCGGAAGGATTCGAAGTCGTCAAGTGTGATGACGACCT
CGACGAGGAACGGGCAACCACAGGCACCGGCGGTGGGCGAAGTGGAAAAC
GTCATAAATCTGTTGGAAGACGAGGACGATGATGACGATTTCAACGGAGG
TGAACCGCGTGGCGGTCAGGCTGCAGGGGGAGAAGAAGGCGGAGATAGCG
ATGGTAGCTCCGACGATTTGCTACTATAAGTGGAAAAGCTAGCGGCGTTT
GAAGCCGCGAACCTCAACCTTGGCAAGAAGAAGACCACCGCACGCAAGAA
GAAGCAGCAGCAGCAGCGGCAGCCATCAGAGGTAGGGACGGCCGAGGCTT
CAGGCGCGAATACCGGTGAAGACCGCCGTAACGACGACAGCACGGACGCG
CGGAAGGATTCGAAGTCGTCAAGTGTGATGACGACCTCGACGAGGAACGG
GCAACCACAGGCACCGGCGGTGGGCGAAGTGGAAAACGTCATAAATCTGT
TGGAAGACGAGGACGATGATGACGATTTCAACGGAGGTGAACCGCGTGGC
GGTCAGGCTGCAGGGGGAGAAGAAGGCGGAGATAGCGATGGTAGCTCCGA
CGATTTGCTACTATAA
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