mRNA_F-distichus_contig10666.569.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10666.569.1
Unique NamemRNA_F-distichus_contig10666.569.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig10666.569.1 vs. uniprot
Match: D7FVI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI3_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 9.810e-25
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    1 LSSPLKAWMVTRYHELDDAVLREIVGKKVTSKTRKDLDDVSDLTGVPLRSCHRQYDNIRR 180
            L    +AWMV RYHELDD+VLREI+GKKVTSKTRKDLDDVS+LT VPLRSCHRQYDNI+R
Sbjct:  126 LGETTQAWMVERYHELDDSVLREILGKKVTSKTRKDLDDVSELTHVPLRSCHRQYDNIQR 185
[Close]
BLAST of mRNA_F-distichus_contig10666.569.1 vs. uniprot
Match: A0A821YBQ2_9NEOP (Hypothetical protein n=4 Tax=Pieris TaxID=7115 RepID=A0A821YBQ2_9NEOP)

HSP 1 Score: 81.3 bits (199), Expect = 1.120e-16
Identity = 34/60 (56.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 LSSPLKAWMVTRYHELDDAVLREIVGKKVTSKTRKDLDDVSDLTGVPLRSCHRQYDNIRR 180
            L  P K  ++ +Y+ELDDAV+RE+VG+K++S+ RKDLD+VS+ +G PLR C RQ+DN+RR
Sbjct:   84 LDEPTKQMLIEKYYELDDAVIRELVGRKLSSRHRKDLDEVSERSGAPLRCCRRQFDNVRR 143
[Close]
BLAST of mRNA_F-distichus_contig10666.569.1 vs. uniprot
Match: A0A6J1X3J3_GALME (acidic fibroblast growth factor intracellular-binding protein-like n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J1X3J3_GALME)

HSP 1 Score: 75.9 bits (185), Expect = 1.500e-16
Identity = 31/55 (56.36%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   16 KAWMVTRYHELDDAVLREIVGKKVTSKTRKDLDDVSDLTGVPLRSCHRQYDNIRR 180
            K  ++ +Y+ELDDAV+RE++G+K++S+ RKDLD+VS+ +G PLR C RQ+DN+RR
Sbjct:   10 KHMLIEKYYELDDAVIRELLGRKLSSRHRKDLDEVSERSGAPLRCCRRQFDNVRR 64
[Close]
BLAST of mRNA_F-distichus_contig10666.569.1 vs. uniprot
Match: A0A6V7JXU9_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7JXU9_9HYME)

HSP 1 Score: 75.1 bits (183), Expect = 1.830e-16
Identity = 30/48 (62.50%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:   37 YHELDDAVLREIVGKKVTSKTRKDLDDVSDLTGVPLRSCHRQYDNIRR 180
            Y+E DDAV+RE++GKK+TSK+RKD+D+V++ TG+ L+SC RQYDN++R
Sbjct:    1 YYEFDDAVIRELLGKKLTSKSRKDMDEVAEKTGITLKSCRRQYDNVKR 48
[Close]
BLAST of mRNA_F-distichus_contig10666.569.1 vs. uniprot
Match: A0A4Y2CD47_ARAVE (Acidic fibroblast growth factor intracellular-binding protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2CD47_ARAVE)

HSP 1 Score: 74.7 bits (182), Expect = 3.750e-16
Identity = 30/55 (54.55%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   25 MVTRYHELDDAVLREIVGKKVTSKTRKDLDDVSDLTGVPLRSCHRQYDNIRRSEK 189
            ++ RY+E DDAV+RE +GKK++++ RKDLDDVS+ TG+ ++SC RQ+DN++R  K
Sbjct:    2 LIERYYEFDDAVIREFLGKKLSARNRKDLDDVSEKTGIQVKSCRRQFDNVKRVYK 56
[Close]
BLAST of mRNA_F-distichus_contig10666.569.1 vs. uniprot
Match: A0A8J5MWV7_HOMAM (Acidic fibroblast growth factor intracellular-binding protein-like n=3 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5MWV7_HOMAM)

HSP 1 Score: 78.2 bits (191), Expect = 1.320e-15
Identity = 34/63 (53.97%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 LSSPLKAWMVTRYHELDDAVLREIVGKKVTSKTRKDLDDVSDLTGVPLRSCHRQYDNIRRSEK 189
            L   ++  ++ +Y+E DD V+REI+GKK++ +TRKDLDDVS+ TGV LRSC RQ+DN++R  K
Sbjct:   84 LEPAIQKMVIEKYYEFDDIVIREIIGKKLSGRTRKDLDDVSEKTGVLLRSCRRQFDNVKRIYK 146
[Close]
BLAST of mRNA_F-distichus_contig10666.569.1 vs. uniprot
Match: A0A5E4QPI2_9NEOP (Uncharacterized protein n=1 Tax=Leptidea sinapis TaxID=189913 RepID=A0A5E4QPI2_9NEOP)

HSP 1 Score: 77.8 bits (190), Expect = 1.580e-15
Identity = 31/60 (51.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 LSSPLKAWMVTRYHELDDAVLREIVGKKVTSKTRKDLDDVSDLTGVPLRSCHRQYDNIRR 180
            +  P K  ++ +Y++LDDAV+RE++G+K++S+ RKDLD+V+D +G PLR C RQ+DN+RR
Sbjct:   84 IDEPTKQMLIEKYYDLDDAVIRELLGRKLSSRHRKDLDEVADKSGSPLRCCRRQFDNVRR 143
[Close]
BLAST of mRNA_F-distichus_contig10666.569.1 vs. uniprot
Match: A0A7D9L1F0_PARCT (Acidic fibroblast growth factor intracellular-binding (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L1F0_PARCT)

HSP 1 Score: 75.1 bits (183), Expect = 1.840e-15
Identity = 31/51 (60.78%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   25 MVTRYHELDDAVLREIVGKKVTSKTRKDLDDVSDLTGVPLRSCHRQYDNIR 177
            ++ RY+E D+ V+REI+GKK+T++ RKDLDD+S+ T VPL+SC RQYDNI+
Sbjct:   91 LIERYYEFDNTVVREILGKKLTTRLRKDLDDISERTSVPLKSCKRQYDNIK 141
[Close]
BLAST of mRNA_F-distichus_contig10666.569.1 vs. uniprot
Match: UPI001E1D0B17 (acidic fibroblast growth factor intracellular-binding protein-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1D0B17)

HSP 1 Score: 77.8 bits (190), Expect = 2.150e-15
Identity = 33/60 (55.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 LSSPLKAWMVTRYHELDDAVLREIVGKKVTSKTRKDLDDVSDLTGVPLRSCHRQYDNIRR 180
            L   ++  ++ +Y+ELDD V+REI+GKK++ +TRKDLDDV++ TGV LRSC RQ+DN++R
Sbjct:   84 LEPAVQRMVIEKYYELDDIVIREIIGKKLSGRTRKDLDDVAEKTGVLLRSCRRQFDNVKR 143
[Close]
BLAST of mRNA_F-distichus_contig10666.569.1 vs. uniprot
Match: UPI001B88BB22 (acidic fibroblast growth factor intracellular-binding protein-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88BB22)

HSP 1 Score: 77.4 bits (189), Expect = 2.970e-15
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:   25 MVTRYHELDDAVLREIVGKKVTSKTRKDLDDVSDLTGVPLRSCHRQYDNIRR 180
            ++ RY++ D  V+RE++GKK+TS+ RKDLDDVSD TG+PLRSC RQ+DNI+R
Sbjct:   91 IIERYYQFDAPVIREMLGKKLTSRHRKDLDDVSDKTGIPLRSCRRQFDNIKR 142
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10666.569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVI3_ECTSI9.810e-2581.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A821YBQ2_9NEOP1.120e-1656.67Hypothetical protein n=4 Tax=Pieris TaxID=7115 Rep... [more]
A0A6J1X3J3_GALME1.500e-1656.36acidic fibroblast growth factor intracellular-bind... [more]
A0A6V7JXU9_9HYME1.830e-1662.50Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]
A0A4Y2CD47_ARAVE3.750e-1654.55Acidic fibroblast growth factor intracellular-bind... [more]
A0A8J5MWV7_HOMAM1.320e-1553.97Acidic fibroblast growth factor intracellular-bind... [more]
A0A5E4QPI2_9NEOP1.580e-1551.67Uncharacterized protein n=1 Tax=Leptidea sinapis T... [more]
A0A7D9L1F0_PARCT1.840e-1560.78Acidic fibroblast growth factor intracellular-bind... [more]
UPI001E1D0B172.150e-1555.00acidic fibroblast growth factor intracellular-bind... [more]
UPI001B88BB222.970e-1563.46acidic fibroblast growth factor intracellular-bind... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10666contigF-distichus_contig10666:23..211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue9.7e-19
Seed eggNOG ortholog2880.D7FVI3
Preferred nameFIBP
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002009,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007368,GO:0007389,GO:0008150,GO:0008543,GO:0009653,GO:0009719,GO:0009799,GO:0009855,GO:0009888,GO:0009987,GO:0010033,GO:0012505,GO:0016020,GO:0016043,GO:0016604,GO:0016607,GO:0017134,GO:0019838,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044782,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060026,GO:0060271,GO:0060429,GO:0065007,GO:0070013,GO:0070121,GO:0070848,GO:0070887,GO:0070925,GO:0071310,GO:0071363,GO:0071495,GO:0071774,GO:0071840,GO:0120031,GO:0120036
EggNOG free text desc.fibroblast growth factor binding
EggNOG OGs2CBWY@1,2QPQ2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size189
Cds size165
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.871535-UTR-F-distichus_contig10666:22..461622928993.871535-UTR-F-distichus_contig10666:22..46Fucus distichus monoicousUTRF-distichus_contig10666 23..46 +
1690885097.24017-UTR-F-distichus_contig10666:22..461690885097.24017-UTR-F-distichus_contig10666:22..46Fucus distichus monoicousUTRF-distichus_contig10666 23..46 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.8860123-CDS-F-distichus_contig10666:46..2111622928993.8860123-CDS-F-distichus_contig10666:46..211Fucus distichus monoicousCDSF-distichus_contig10666 47..211 +
1690885097.2506783-CDS-F-distichus_contig10666:46..2111690885097.2506783-CDS-F-distichus_contig10666:46..211Fucus distichus monoicousCDSF-distichus_contig10666 47..211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10666.569.1prot_F-distichus_contig10666.569.1Fucus distichus monoicouspolypeptideF-distichus_contig10666 47..211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10666.569.1

>prot_F-distichus_contig10666.569.1 ID=prot_F-distichus_contig10666.569.1|Name=mRNA_F-distichus_contig10666.569.1|organism=Fucus distichus monoicous|type=polypeptide|length=55bp
MVTRYHELDDAVLREIVGKKVTSKTRKDLDDVSDLTGVPLRSCHRQYDNI
RRSEK
back to top

mRNA from alignment at F-distichus_contig10666:23..211+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10666.569.1 ID=mRNA_F-distichus_contig10666.569.1|Name=mRNA_F-distichus_contig10666.569.1|organism=Fucus distichus monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at F-distichus_contig10666:23..211+ (Fucus distichus monoicous)
CTCTCCTCTCCACTGAAGGCGTGGATGGTGACGCGGTACCACGAGTTAGA
CGATGCCGTGCTGCGAGAGATCGTGGGCAAGAAGGTCACTTCCAAGACCA
GAAAGGACCTGGACGACGTTAGCGACCTCACGGGCGTTCCGCTCCGCAGC
TGCCACCGACAGTACGACAACATCCGTAGGTCAGAGAAA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig10666:23..211+

>mRNA_F-distichus_contig10666.569.1 ID=mRNA_F-distichus_contig10666.569.1|Name=mRNA_F-distichus_contig10666.569.1|organism=Fucus distichus monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at F-distichus_contig10666:23..211+ (Fucus distichus monoicous)
ATGGTGACGCGGTACCACGAGTTAGACGATGCCGTGCTGCGAGAGATCGT
GGGCAAGAAGGTCACTTCCAAGACCAGAAAGGACCTGGACGACGTTAGCG
ACCTCACGGGCGTTCCGCTCCGCAGCTGCCACCGACAGTACGACAACATC
CGTAGGTCAGAGAAAATGGTGACGCGGTACCACGAGTTAGACGATGCCGT
GCTGCGAGAGATCGTGGGCAAGAAGGTCACTTCCAAGACCAGAAAGGACC
TGGACGACGTTAGCGACCTCACGGGCGTTCCGCTCCGCAGCTGCCACCGA
CAGTACGACAACATCCGTAGGTCAGAGAAA
back to top