mRNA_F-distichus_contig106603.564.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106603.564.1
Unique NamemRNA_F-distichus_contig106603.564.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig106603.564.1 vs. uniprot
Match: A0A6H5KZU9_9PHAE (Protein O-GlcNAc transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZU9_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.210e-41
Identity = 72/79 (91.14%), Postives = 76/79 (96.20%), Query Frame = 1
Query:    1 RYKDAQALCEAVYRQAAYRTDNLLLLGAVHFQLRNFSECVLYNQQCIRIDPNFAEAYSNLGNALKELGDIAGAVQFYLK 237
            RYKDAQALCE+VYRQ A RTDNLLLLGAVHFQLRNFSEC+LYNQQCIRIDPNFAEAYSNLGNALKELGD+ GA+QFYLK
Sbjct:   94 RYKDAQALCESVYRQGACRTDNLLLLGAVHFQLRNFSECILYNQQCIRIDPNFAEAYSNLGNALKELGDVGGAIQFYLK 172          
BLAST of mRNA_F-distichus_contig106603.564.1 vs. uniprot
Match: A0A7S2WWR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWR9_9STRA)

HSP 1 Score: 135 bits (339), Expect = 9.000e-39
Identity = 59/79 (74.68%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 RYKDAQALCEAVYRQAAYRTDNLLLLGAVHFQLRNFSECVLYNQQCIRIDPNFAEAYSNLGNALKELGDIAGAVQFYLK 237
            RY++A  +CE +Y+  A+RT+NLLL+GA+HFQLRNFSEC+ YNQQC+R+ PNFAEAYSNLGNALKELGD AGAVQFYLK
Sbjct:   22 RYREALQMCETIYQVDAFRTENLLLMGAIHFQLRNFSECIFYNQQCVRVQPNFAEAYSNLGNALKELGDCAGAVQFYLK 100          
BLAST of mRNA_F-distichus_contig106603.564.1 vs. uniprot
Match: A0A7S1C5Z1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5Z1_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.750e-37
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 1
Query:    1 RYKDAQALCEAVYRQAAYRTDNLLLLGAVHFQLRNFSECVLYNQQCIRIDPNFAEAYSNLGNALKELGDIAGAVQFY 231
            RYKDA   CE VY+  AYR+DNLLLLGAVHFQLRN+SEC+ YNQQ IRIDPNFAEAY NLGNALKELGDI G+VQFY
Sbjct:   19 RYKDAHITCEQVYQTDAYRSDNLLLLGAVHFQLRNYSECIFYNQQAIRIDPNFAEAYGNLGNALKELGDIDGSVQFY 95          
BLAST of mRNA_F-distichus_contig106603.564.1 vs. uniprot
Match: A0A835ZDI7_9STRA (Protein O-GlcNAc transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI7_9STRA)

HSP 1 Score: 140 bits (354), Expect = 4.630e-37
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    4 YKDAQALCEAVYRQAAYRTDNLLLLGAVHFQLRNFSECVLYNQQCIRIDPNFAEAYSNLGNALKELGDIAGAVQFYLK 237
            Y DAQA CEA+Y + A+RTDNLLLLGAVHFQLRNFSEC+ YNQQCIR+DP FAEAYSNLGNALKELGDI GAVQFY+K
Sbjct:   13 YTDAQATCEAIYAEDAHRTDNLLLLGAVHFQLRNFSECIFYNQQCIRVDPGFAEAYSNLGNALKELGDINGAVQFYVK 90          
BLAST of mRNA_F-distichus_contig106603.564.1 vs. uniprot
Match: A0A482RRV3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RRV3_9ARCH)

HSP 1 Score: 120 bits (300), Expect = 8.150e-33
Identity = 54/81 (66.67%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    4 YKDAQALCEAVYRQAAYRTDNLLLLGAVHFQLRNFSECVLYNQQCIRIDPNFAEAYSNLGNALKELGDIAGAVQFYLKVVR 246
            Y D  +LC+ +Y   A++TDNL+L+GA HFQLRN+SE V YNQQCI++DP+ AEA+SNLGNALKELGD+ GA QFYLKV R
Sbjct:   61 YTDCLSLCDKIYEFDAHKTDNLILMGAAHFQLRNYSESVFYNQQCIKVDPHCAEAFSNLGNALKELGDLKGATQFYLKVRR 141          
BLAST of mRNA_F-distichus_contig106603.564.1 vs. uniprot
Match: A0A7S2B1K3_9STRA (Protein O-GlcNAc transferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B1K3_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.590e-31
Identity = 56/75 (74.67%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    1 RYKDAQALCEAVYRQAAYRTDNLLLLGAVHFQLRNFSECVLYNQQCIRIDPNFAEAYSNLGNALKELGDIAGAVQ 225
            RYK+A  +CE +Y   AYRT+NLLLLGA HFQLRNFSECV YNQQC+R+DPNFAEA+SNLGNALKELGD+ GA++
Sbjct:   53 RYKEALDVCEGMYITDAYRTENLLLLGATHFQLRNFSECVFYNQQCVRVDPNFAEAFSNLGNALKELGDVQGAIK 127          
BLAST of mRNA_F-distichus_contig106603.564.1 vs. uniprot
Match: A0A7S3MGN8_9STRA (Protein O-GlcNAc transferase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGN8_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.960e-31
Identity = 58/78 (74.36%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    4 YKDAQALCEAVYRQAAYRTDNLLLLGAVHFQLRNFSECVLYNQQCIRIDPNFAEAYSNLGNALKELGDIAGAVQFYLK 237
            Y DA    E VY   AYRT+NLLLLGA+HFQLRNFSE + YNQQCIR+D NFAEAYSNLGNALKELGD+ GA +FYLK
Sbjct:   80 YSDALTCSEKVYESDAYRTENLLLLGAIHFQLRNFSESIFYNQQCIRVDANFAEAYSNLGNALKELGDLKGATKFYLK 157          
BLAST of mRNA_F-distichus_contig106603.564.1 vs. uniprot
Match: A0A6G0XEP2_9STRA (Protein O-GlcNAc transferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XEP2_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.400e-30
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    1 RYKDAQALCEAVYRQAAYRTDNLLLLGAVHFQLRNFSECVLYNQQCIRIDPNFAEAYSNLGNALKELGDIAGAVQFYL 234
            +YK+  A+CE +Y   A RTDNLLLLGA+HFQLRNFSE + YNQQCIRIDP FAEA+ NLGNALKE+GD  GA+QFYL
Sbjct:   43 KYKEGIAICEMLYEADAARTDNLLLLGALHFQLRNFSEAIFYNQQCIRIDPQFAEAFGNLGNALKEIGDSQGAIQFYL 120          
BLAST of mRNA_F-distichus_contig106603.564.1 vs. uniprot
Match: A0A067CJ54_SAPPC (Protein O-GlcNAc transferase (Fragment) n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ54_SAPPC)

HSP 1 Score: 122 bits (305), Expect = 1.910e-30
Identity = 56/79 (70.89%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 RYKDAQALCEAVYRQAAYRTDNLLLLGAVHFQLRNFSECVLYNQQCIRIDPNFAEAYSNLGNALKELGDIAGAVQFYLK 237
            RYK+  ++CE +Y   A RTDNLLLLGA+HFQLRNFSE + YNQQCIRI+P+FAEA+ NLGNALKE+GD+ GAVQFYL+
Sbjct:   51 RYKEGISICEHLYAADASRTDNLLLLGALHFQLRNFSESIFYNQQCIRIEPHFAEAFGNLGNALKEIGDMNGAVQFYLR 129          
BLAST of mRNA_F-distichus_contig106603.564.1 vs. uniprot
Match: A0A1W0A6E6_9STRA (Protein O-GlcNAc transferase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6E6_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.620e-30
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 1
Query:    1 RYKDAQALCEAVYRQAAYRTDNLLLLGAVHFQLRNFSECVLYNQQCIRIDPNFAEAYSNLGNALKELGDIAGAVQFYLK 237
            +YKD   +C+ +Y   A RTDNLLLLGA+HFQLRNFSE + YNQQCIRI+P+FAEA+ NLGNALKE+GDI GAVQFYL+
Sbjct:   92 KYKDGVVICDHLYIADASRTDNLLLLGALHFQLRNFSESIFYNQQCIRIEPHFAEAFGNLGNALKEIGDINGAVQFYLR 170          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106603.564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZU9_9PHAE1.210e-4191.14Protein O-GlcNAc transferase n=2 Tax=Ectocarpus Ta... [more]
A0A7S2WWR9_9STRA9.000e-3974.68Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1C5Z1_9STRA1.750e-3780.52Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835ZDI7_9STRA4.630e-3783.33Protein O-GlcNAc transferase n=1 Tax=Tribonema min... [more]
A0A482RRV3_9ARCH8.150e-3366.67Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2B1K3_9STRA1.590e-3174.67Protein O-GlcNAc transferase n=1 Tax=Dictyocha spe... [more]
A0A7S3MGN8_9STRA2.960e-3174.36Protein O-GlcNAc transferase n=1 Tax=Spumella elon... [more]
A0A6G0XEP2_9STRA1.400e-3071.79Protein O-GlcNAc transferase n=1 Tax=Aphanomyces e... [more]
A0A067CJ54_SAPPC1.910e-3070.89Protein O-GlcNAc transferase (Fragment) n=3 Tax=Sa... [more]
A0A1W0A6E6_9STRA2.620e-3070.89Protein O-GlcNAc transferase (Fragment) n=1 Tax=Th... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106603contigF-distichus_contig106603:72..1021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue9.9e-36
Seed eggNOG ortholog2880.D7FX68
KEGG rclassRC00005,RC00059
KEGG koko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006464,GO:0006486,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0016740,GO:0016757,GO:0019538,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0070085,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
EC2.4.1.255
COG Functional cat.O
CAZyGT41
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko03036
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.3983047-CDS-F-distichus_contig106603:71..1851622928993.3983047-CDS-F-distichus_contig106603:71..185Fucus distichus monoicousCDSF-distichus_contig106603 72..185 -
1690885096.914577-CDS-F-distichus_contig106603:71..1851690885096.914577-CDS-F-distichus_contig106603:71..185Fucus distichus monoicousCDSF-distichus_contig106603 72..185 -
1622928993.4145846-CDS-F-distichus_contig106603:889..10211622928993.4145846-CDS-F-distichus_contig106603:889..1021Fucus distichus monoicousCDSF-distichus_contig106603 890..1021 -
1690885096.933566-CDS-F-distichus_contig106603:889..10211690885096.933566-CDS-F-distichus_contig106603:889..1021Fucus distichus monoicousCDSF-distichus_contig106603 890..1021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106603.564.1prot_F-distichus_contig106603.564.1Fucus distichus monoicouspolypeptideF-distichus_contig106603 72..1021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106603.564.1

>prot_F-distichus_contig106603.564.1 ID=prot_F-distichus_contig106603.564.1|Name=mRNA_F-distichus_contig106603.564.1|organism=Fucus distichus monoicous|type=polypeptide|length=82bp
RYKDAQALCEAVYRQAAYRTDNLLLLGAVHFQLRNFSECVLYNQQCIRID
PNFAEAYSNLGNALKELGDIAGAVQFYLKVVR
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mRNA from alignment at F-distichus_contig106603:72..1021-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106603.564.1 ID=mRNA_F-distichus_contig106603.564.1|Name=mRNA_F-distichus_contig106603.564.1|organism=Fucus distichus monoicous|type=mRNA|length=950bp|location=Sequence derived from alignment at F-distichus_contig106603:72..1021- (Fucus distichus monoicous)
AGGTACAAGGACGCCCAGGCACTGTGCGAAGCCGTCTACCGGCAAGCGGC TTACCGGACGGATAACCTCCTGCTCCTTGGCGCGGTGCACTTCCAGCTGA GAAACTTCAGCGAGTGCGTCCTGTACAATCAGGTGACGTCACGAGAGAGG ATTGATTCAAAACCATAATCTAATAAATTTCTTTGAAATTTCTGCCTCAC GTCCGTGAACAGCTTTTTACCATGTCATGCTTTCGTCCTAGATGGAGCTG AATGTGCTTTGCTGCTGCTTACGACTGCCTGCTTTTGCGCCTGTAGCTGT AGCTGTAGTTCGACCGTCGACCCTCTTAAAAGTAGGTTTGGCTGTTTGAG GTATGTGGCGGGATACCACGGTTGTTTGGATGTTCTGGTGTTTCCCGGCG AGAGGAATGGGATATAAGTACTACTCCTAGTATTATTAGTCAATAGGTTT TACAAGGCTATATGTACACGTAAGGGGTTTCATACCGAAACTCTGGGCGT TTGTGGAAATGATGTCACGTGTCCTCCCGCACGAGACCTTCCGGCCGTCT GCTTTGCCATCCAGAGTACAGATAGTACAATGCAGCCGAGATACTATCAA TAGGGAGGGAGGGAGGAAGGAAGGGGATCACATTTGAAAAAGAGAAAGCC TACTATTAATAGTATATTACTCCCTTTTCTTAAGAGATGTGTGGATTATG CCCTTGCACTCTTCTCTCTATATGTTTCTATATGTCTCTCCCTTTCTCTT TCTTTCTTTCTTTCTCTATGTTTTCCTTCTCTCTCTCTCCTCTGCTTTGG ACTTGTTCGACCGGCTCCGGCGTTCCTTGCTCCCAGCAATGTATTCGGAT CGACCCCAATTTCGCCGAGGCCTATAGCAACCTGGGCAACGCGCTTAAGG AGCTAGGGGACATAGCGGGCGCCGTCCAGTTTTACCTGAAGGTAGTCCGG
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Coding sequence (CDS) from alignment at F-distichus_contig106603:72..1021-

>mRNA_F-distichus_contig106603.564.1 ID=mRNA_F-distichus_contig106603.564.1|Name=mRNA_F-distichus_contig106603.564.1|organism=Fucus distichus monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at F-distichus_contig106603:72..1021- (Fucus distichus monoicous)
AGGTACAAGGACGCCCAGGCACTGTGCGAAGCCGTCTACCGGCAAGCGGC
TTACCGGACGGATAACCTCCTGCTCCTTGGCGCGGTGCACTTCCAGCTGA
GAAACTTCAGCGAGTGCGTCCTGTACAATCAGAGGTACAAGGACGCCCAG
GCACTGTGCGAAGCCGTCTACCGGCAAGCGGCTTACCGGACGGATAACCT
CCTGCTCCTTGGCGCGGTGCACTTCCAGCTGAGAAACTTCAGCGAGTGCG
TCCTGTACAATCAGCAATGTATTCGGATCGACCCCAATTTCGCCGAGGCC
TATAGCAACCTGGGCAACGCGCTTAAGGAGCTAGGGGACATAGCGGGCGC
CGTCCAGTTTTACCTGAAGGTAGTCCGGCAATGTATTCGGATCGACCCCA
ATTTCGCCGAGGCCTATAGCAACCTGGGCAACGCGCTTAAGGAGCTAGGG
GACATAGCGGGCGCCGTCCAGTTTTACCTGAAGGTAGTCCGG
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