mRNA_F-distichus_contig106239.532.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106239.532.1
Unique NamemRNA_F-distichus_contig106239.532.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: A0A6H5JQT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT1_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.020e-24
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   55 LEGAMAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMYDSSIVEEELQV 273
            LE AMA RR RPSLLLPAWRAVGFAVGTGATALLP E SAKV  AI++ V E YD NIR MYD+ IV EE +V
Sbjct:   79 LESAMANRRARPSLLLPAWRAVGFAVGTGATALLPAETSAKVGAAISRAVLEHYDENIRAMYDARIVNEEQEV 151          
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: D7FX83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX83_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 6.010e-24
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   67 MAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMYDSSIVEEE 264
            MA RR RPSLLLPAWRAVGFAVGTGATALLP +ASAKV  AI++ V E YD NIR MYD+ IV EE
Sbjct:    1 MANRRARPSLLLPAWRAVGFAVGTGATALLPADASAKVGAAISRAVLEHYDENIRAMYDARIVAEE 66          
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: A0A498L9L3_LABRO (5-demethoxyubiquinone mitochondrial-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498L9L3_LABRO)

HSP 1 Score: 51.6 bits (122), Expect = 3.460e-6
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   67 MAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMYD 243
            +A+ R RP+LLLP W  VGFA+G G +ALL  E +     A+ +++SE Y++ IRT+ +
Sbjct:   50 LAENRVRPTLLLPLWNIVGFALGAG-SALLGKEGAMACTVAVEESISEHYNSQIRTLME 107          
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: A0A3M6UW81_POCDA (Uncharacterized protein (Fragment) n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6UW81_POCDA)

HSP 1 Score: 50.8 bits (120), Expect = 1.180e-5
Identity = 26/71 (36.62%), Postives = 41/71 (57.75%), Query Frame = 1
Query:   49 KQLEGAMAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMYDSSIVEE 261
            K+ E  +A+RR RP+ L+P W   G+ +G G TALL  EA+     A+ + +SE YD  +R +    + +E
Sbjct:   75 KKFEQIVAERRVRPTALIPLWNIAGYVLGAG-TALLGKEAAMACTVAVEEVISEHYDNQLRELLVEGVTDE 144          
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: H3A8N6_LATCH (5-demethoxyubiquinone hydroxylase, mitochondrial n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3A8N6_LATCH)

HSP 1 Score: 50.8 bits (120), Expect = 1.910e-5
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   67 MAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMYD 243
            M + R RP++LLP W  VGFA+G G TALL  E +     A+ +++SE Y+  IRT+ +
Sbjct:  108 MVEHRVRPTILLPFWNVVGFALGAG-TALLGKEGAMACTVAVEESISEHYNNQIRTLME 165          
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: UPI0004D053C7 (ubiquinone biosynthesis protein COQ7 homolog n=1 Tax=Galeopterus variegatus TaxID=482537 RepID=UPI0004D053C7)

HSP 1 Score: 48.5 bits (114), Expect = 3.760e-5
Identity = 33/94 (35.11%), Postives = 50/94 (53.19%), Query Frame = 1
Query:    1 LLPCHIPSFWNI-RATDKQLEGAMAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMY--DSSIVEEELQV 273
            L  C +   W+  +A  K+    M   R RP++L+P W  +GFA+G G TALL  E +     A+ ++++  Y+  IRT+   D    EE LQV
Sbjct:   16 LFLCFLQKMWDQEKAHLKKFNELMVGFRVRPTILMPFWNVLGFALGAG-TALLGKEGAMACTVAVEESIAHHYNNQIRTLMEEDPDKYEELLQV 108          
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: A0A0R3SZZ1_RODNA (Uncharacterized protein n=1 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3SZZ1_RODNA)

HSP 1 Score: 49.3 bits (116), Expect = 4.910e-5
Identity = 27/63 (42.86%), Postives = 36/63 (57.14%), Query Frame = 1
Query:   52 QLEGAMAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMY 240
            + E  M   RTRPS L+P W+A GFA G   T LL  EA+     A+   V+EQY+  IR ++
Sbjct:   60 KFEQLMPLNRTRPSALMPVWKAAGFAFGI-TTGLLGEEATKSFNSAVETVVAEQYNHQIRELF 121          
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: UPI00112C02E4 (5-demethoxyubiquinone hydroxylase, mitochondrial isoform X1 n=3 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112C02E4)

HSP 1 Score: 49.7 bits (117), Expect = 5.030e-5
Identity = 27/65 (41.54%), Postives = 38/65 (58.46%), Query Frame = 1
Query:   49 KQLEGAMAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMYD 243
            K     M   R RP++LLP W  VGFA+G G TALL  E +     A+ +++SE Y+  IRT+ +
Sbjct:  101 KTFNELMIAHRVRPTILLPFWNVVGFALGAG-TALLGKEGAMACTVAVEESISEHYNNQIRTLME 164          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JQT1_9PHAE1.020e-2473.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX83_ECTSI6.010e-2475.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A498L9L3_LABRO3.460e-644.075-demethoxyubiquinone mitochondrial-like protein n... [more]
A0A3M6UW81_POCDA1.180e-536.62Uncharacterized protein (Fragment) n=3 Tax=Pocillo... [more]
H3A8N6_LATCH1.910e-544.075-demethoxyubiquinone hydroxylase, mitochondrial n... [more]
UPI0004D053C73.760e-535.11ubiquinone biosynthesis protein COQ7 homolog n=1 T... [more]
A0A0R3SZZ1_RODNA4.910e-542.86Uncharacterized protein n=1 Tax=Rodentolepis nana ... [more]
UPI00112C02E45.030e-541.545-demethoxyubiquinone hydroxylase, mitochondrial i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106239contigF-distichus_contig106239:1409..1681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquinone biosynthesis protein Coq7
Ec32 orthologEc-26_003900.1
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928989.9008794-CDS-F-distichus_contig106239:1408..16811622928989.9008794-CDS-F-distichus_contig106239:1408..1681Fucus distichus monoicousCDSF-distichus_contig106239 1409..1681 +
1690885094.1956434-CDS-F-distichus_contig106239:1408..16811690885094.1956434-CDS-F-distichus_contig106239:1408..1681Fucus distichus monoicousCDSF-distichus_contig106239 1409..1681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106239.532.1prot_F-distichus_contig106239.532.1Fucus distichus monoicouspolypeptideF-distichus_contig106239 1409..1681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106239.532.1

>prot_F-distichus_contig106239.532.1 ID=prot_F-distichus_contig106239.532.1|Name=mRNA_F-distichus_contig106239.532.1|organism=Fucus distichus monoicous|type=polypeptide|length=91bp
LLPCHIPSFWNIRATDKQLEGAMAQRRTRPSLLLPAWRAVGFAVGTGATA
LLPPEASAKVEGAIAKTVSEQYDANIRTMYDSSIVEEELQV
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mRNA from alignment at F-distichus_contig106239:1409..1681+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106239.532.1 ID=mRNA_F-distichus_contig106239.532.1|Name=mRNA_F-distichus_contig106239.532.1|organism=Fucus distichus monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at F-distichus_contig106239:1409..1681+ (Fucus distichus monoicous)
CTGCTCCCATGCCATATACCCTCGTTTTGGAATATTCGTGCCACGGACAA GCAGCTCGAGGGCGCCATGGCGCAGCGACGGACCAGACCCAGCCTCCTCC TTCCCGCCTGGCGCGCGGTCGGCTTCGCGGTCGGCACGGGGGCCACCGCG CTGCTCCCGCCCGAGGCTTCGGCGAAGGTCGAAGGCGCCATCGCCAAGAC CGTGTCGGAGCAGTACGACGCCAACATCCGCACCATGTACGATTCCAGCA TCGTGGAGGAGGAGCTCCAGGTA
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Coding sequence (CDS) from alignment at F-distichus_contig106239:1409..1681+

>mRNA_F-distichus_contig106239.532.1 ID=mRNA_F-distichus_contig106239.532.1|Name=mRNA_F-distichus_contig106239.532.1|organism=Fucus distichus monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at F-distichus_contig106239:1409..1681+ (Fucus distichus monoicous)
CTGCTCCCATGCCATATACCCTCGTTTTGGAATATTCGTGCCACGGACAA
GCAGCTCGAGGGCGCCATGGCGCAGCGACGGACCAGACCCAGCCTCCTCC
TTCCCGCCTGGCGCGCGGTCGGCTTCGCGGTCGGCACGGGGGCCACCGCG
CTGCTCCCGCCCGAGGCTTCGGCGAAGGTCGAAGGCGCCATCGCCAAGAC
CGTGTCGGAGCAGTACGACGCCAACATCCGCACCATGTACGATTCCAGCA
TCGTGGAGGAGGAGCTCCAGGTACTGCTCCCATGCCATATACCCTCGTTT
TGGAATATTCGTGCCACGGACAAGCAGCTCGAGGGCGCCATGGCGCAGCG
ACGGACCAGACCCAGCCTCCTCCTTCCCGCCTGGCGCGCGGTCGGCTTCG
CGGTCGGCACGGGGGCCACCGCGCTGCTCCCGCCCGAGGCTTCGGCGAAG
GTCGAAGGCGCCATCGCCAAGACCGTGTCGGAGCAGTACGACGCCAACAT
CCGCACCATGTACGATTCCAGCATCGTGGAGGAGGAGCTCCAGGTA
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