mRNA_F-distichus_contig106178.524.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106178.524.1
Unique NamemRNA_F-distichus_contig106178.524.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig106178.524.1 vs. uniprot
Match: A0A6H5K8M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M2_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.390e-40
Identity = 87/153 (56.86%), Postives = 95/153 (62.09%), Query Frame = 1
Query:   28 FQIGELRKHQLLEVRVRCYALRHERLT--PMASDPKTKPNGGSEGDGF-------------------------------ASDHGAERQQQVYFQCHSMRLQHPDDELGGNLLLVLPQ---TVVHRIDAWSPMMPPPRWNSTHGLVHWGLHSDR 378
            FQIGELRKHQLLE RVRCYALRHERLT  P  ++      G SE  G                                A++  A    QV+FQ HSMRLQHPDDELGGNLLLVLPQ   TVVHRIDAWSPMMPPPRWNS+HG V WGLH+D+
Sbjct:  244 FQIGELRKHQLLETRVRCYALRHERLTYNPCGNNNNV---GSSESSGLGARSASVSSNIXXXXXXXXXXXXXXSTTVTSAAELAARMPDQVFFQSHSMRLQHPDDELGGNLLLVLPQARGTVVHRIDAWSPMMPPPRWNSSHGPVQWGLHTDK 393          
BLAST of mRNA_F-distichus_contig106178.524.1 vs. uniprot
Match: A0A7S2JZ67_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZ67_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.610e-23
Identity = 52/110 (47.27%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   28 FQIGELRKHQLLEVRVRCYALRHERLTPMASDPKTKPNGGSEGDGFASDHGAERQQQVYFQCHSMRLQHPDDELGGNLLLVLPQTVVHRIDAWSPMMPPPRWNSTHGLVH 357
            FQ+ ELRKHQL+E  VR Y +RHER    ++D + +    S           E     YFQ H+MRLQHPDD LGG LL+ LP  VVHR+D +SP+MPP +W    G +H
Sbjct:  250 FQLCELRKHQLVEAHVRVYCVRHEREHKESNDVEMRKESSS----XXXVDEEEEPDTCYFQTHAMRLQHPDDALGGFLLMALPNVVVHRLDKFSPLMPPAKWTDASGQIH 355          
BLAST of mRNA_F-distichus_contig106178.524.1 vs. uniprot
Match: F2TZV9_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TZV9_SALR5)

HSP 1 Score: 87.8 bits (216), Expect = 9.020e-18
Identity = 51/112 (45.54%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   28 FQIGELRKHQLLEVRVRCYALRHE------RLTPMASDPKTKPNGGSEGDGFASDHGAERQQQVYFQCHSMRLQHPDDELGGNLLLVLPQTVVHRIDAWSPMMPPPRWNSTH 345
            FQ+ +L+K+ L+E  VR YA+RH       R  P +S P  +    S        H       V+FQ H+MRL HP+DELGG LLL LP  V+HRIDAWSP+MP P   S H
Sbjct:  248 FQVCDLKKYALVEAHVRMYAIRHRTVSSGGRAVPRSSGP-ARTISSSSSPPLDPTH-------VWFQSHAMRLTHPNDELGGMLLLSLPDQVLHRIDAWSPLMPTPHDGSEH 351          
BLAST of mRNA_F-distichus_contig106178.524.1 vs. uniprot
Match: K3WWT5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWT5_GLOUD)

HSP 1 Score: 87.4 bits (215), Expect = 1.170e-17
Identity = 48/110 (43.64%), Postives = 58/110 (52.73%), Query Frame = 1
Query:   28 FQIGELRKHQLLEVRVRCYALRHERLTPMASDPKTKPNGGSEGDGFASDHGAERQQQVYFQCHSMRLQHPDDELGGNLLLVLPQTVVHRIDAWSPMMPPPRWNSTHGLVH 357
            FQ  E+RKHQL+E  VR YA+RH+                            E  Q  YFQ H MR+QHPDD+LGG +LL LP  VVHR+DAWSP+  P    S  G+ H
Sbjct:  228 FQACEMRKHQLVEAHVRMYAIRHD---------------------------VEFGQHYYFQSHPMRIQHPDDDLGGMMLLALPSVVVHRMDAWSPLCRPKSTPSLCGMHH 310          
BLAST of mRNA_F-distichus_contig106178.524.1 vs. uniprot
Match: A0A3M6VL42_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL42_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.630e-17
Identity = 48/110 (43.64%), Postives = 62/110 (56.36%), Query Frame = 1
Query:   28 FQIGELRKHQLLEVRVRCYALRHERLTPMASDPKTKPNGGSEGDGFASDHGAERQQQVYFQCHSMRLQHPDDELGGNLLLVLPQTVVHRIDAWSPMMPPPRWNSTHGLVH 357
            FQ+ E+RKHQL+E  VR YA+RH+                            E  ++ YFQ + MR+QHPDD+LGG LLL LP  VVHR+DAWSP++ P +   T GL H
Sbjct:  143 FQVCEMRKHQLVEAHVRMYAIRHDE---------------------------EFGERYYFQSYPMRIQHPDDDLGGMLLLALPSVVVHRMDAWSPLLRP-KSAETCGLHH 224          
BLAST of mRNA_F-distichus_contig106178.524.1 vs. uniprot
Match: A0A3R7G2I9_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G2I9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.840e-17
Identity = 48/110 (43.64%), Postives = 62/110 (56.36%), Query Frame = 1
Query:   28 FQIGELRKHQLLEVRVRCYALRHERLTPMASDPKTKPNGGSEGDGFASDHGAERQQQVYFQCHSMRLQHPDDELGGNLLLVLPQTVVHRIDAWSPMMPPPRWNSTHGLVH 357
            FQ+ E+RKHQL+E  VR YA+RH+                            E  ++ YFQ + MR+QHPDD+LGG LLL LP  VVHR+DAWSP++ P +   T GL H
Sbjct:  209 FQVCEMRKHQLVEAHVRMYAVRHD---------------------------VEFGERYYFQSYPMRIQHPDDDLGGMLLLALPSVVVHRMDAWSPLLRP-KCAETCGLHH 290          
BLAST of mRNA_F-distichus_contig106178.524.1 vs. uniprot
Match: A0A836CL18_9STRA (Inward rectifier potassium channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL18_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.560e-17
Identity = 46/84 (54.76%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   28 FQIGELRKHQLLEVRVRCYALRHERLTPMASDPKTKPNGGSEGDGFASDHGAERQQQVYFQCHSMRLQHPDDELGGNLLLVLPQ 279
            FQ+GELRKHQLLE +VRCYA+RH R  P+ +             G   D  A   + V++Q H+MRLQHPDDELGG LLLVLPQ
Sbjct:  168 FQVGELRKHQLLETKVRCYAVRHHRTLPIDAA------------GCLDD--ANPPETVHYQTHNMRLQHPDDELGGALLLVLPQ 237          
BLAST of mRNA_F-distichus_contig106178.524.1 vs. uniprot
Match: A0A2D4BP43_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BP43_PYTIN)

HSP 1 Score: 85.1 bits (209), Expect = 7.820e-17
Identity = 46/99 (46.46%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   28 FQIGELRKHQLLEVRVRCYALRHERLTPMASDPKTKPNGGSEGDGFASDHGAERQQQVYFQCHSMRLQHPDDELGGNLLLVLPQTVVHRIDAWSPMMPP 324
            FQ+ E+RKHQL+E  VR YA+RH+                            E  Q  YFQ + MR+QHPDDELGG LLL LP  VVHRID WSP++ P
Sbjct:  227 FQVCEMRKHQLVEGHVRMYAVRHD---------------------------VEXGQHYYFQSYPMRIQHPDDELGGMLLLALPSVVVHRIDPWSPLLRP 298          
BLAST of mRNA_F-distichus_contig106178.524.1 vs. uniprot
Match: A0A6G0WFX3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WFX3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 8.320e-17
Identity = 46/99 (46.46%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   28 FQIGELRKHQLLEVRVRCYALRHERLTPMASDPKTKPNGGSEGDGFASDHGAERQQQVYFQCHSMRLQHPDDELGGNLLLVLPQTVVHRIDAWSPMMPP 324
            FQ+ E R+HQL+E  VRCYA+R+     M++D +++                     + FQ H MRLQ PDDELGG LL+ LPQ VVHRID WSP+ PP
Sbjct:  202 FQVCERRRHQLVEAHVRCYAVRNA----MSADGESE---------------------LLFQPHPMRLQQPDDELGGVLLMALPQMVVHRIDPWSPLFPP 275          
BLAST of mRNA_F-distichus_contig106178.524.1 vs. uniprot
Match: H3GC74_PHYRM (Uncharacterized protein n=22 Tax=Phytophthora TaxID=4783 RepID=H3GC74_PHYRM)

HSP 1 Score: 84.0 bits (206), Expect = 1.890e-16
Identity = 44/99 (44.44%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   28 FQIGELRKHQLLEVRVRCYALRHERLTPMASDPKTKPNGGSEGDGFASDHGAERQQQVYFQCHSMRLQHPDDELGGNLLLVLPQTVVHRIDAWSPMMPP 324
            FQ+ E+RKHQL+E  VR YA+RH+                            E  +  YFQ + MR+QHPDD+LGG LLL LP  VVHR+DAWSP++ P
Sbjct:  207 FQVCEMRKHQLVEAHVRMYAIRHDE---------------------------EFGEHYYFQSYPMRIQHPDDDLGGMLLLALPSVVVHRMDAWSPLLRP 278          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106178.524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8M2_9PHAE1.390e-4056.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2JZ67_9STRA5.610e-2347.27Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
F2TZV9_SALR59.020e-1845.54Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
K3WWT5_GLOUD1.170e-1743.64Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3M6VL42_9STRA2.630e-1743.64Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A3R7G2I9_9STRA2.840e-1743.64Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A836CL18_9STRA5.560e-1754.76Inward rectifier potassium channel-domain-containi... [more]
A0A2D4BP43_PYTIN7.820e-1746.46Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A6G0WFX3_9STRA8.320e-1746.46Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
H3GC74_PHYRM1.890e-1644.44Uncharacterized protein n=22 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106178contigF-distichus_contig106178:243..1095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue6e-16
Seed eggNOG ortholog946362.XP_004997248.1
KEGG koko:K05005,ko:K05330
KEGG TC1.A.2.1.14,1.A.2.1.15,1.A.2.1.9
KEGG Pathwayko04725,ko04921,map04725,map04921
Hectar predicted targeting categoryother localisation
EggNOG free text desc.inward rectifier potassium channel activity
EggNOG OGsKOG3827@1,KOG3827@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons2
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928988.1412375-CDS-F-distichus_contig106178:242..5211622928988.1412375-CDS-F-distichus_contig106178:242..521Fucus distichus monoicousCDSF-distichus_contig106178 243..521 +
1690885093.1959836-CDS-F-distichus_contig106178:242..5211690885093.1959836-CDS-F-distichus_contig106178:242..521Fucus distichus monoicousCDSF-distichus_contig106178 243..521 +
1622928988.1575713-CDS-F-distichus_contig106178:996..10951622928988.1575713-CDS-F-distichus_contig106178:996..1095Fucus distichus monoicousCDSF-distichus_contig106178 997..1095 +
1690885093.2075737-CDS-F-distichus_contig106178:996..10951690885093.2075737-CDS-F-distichus_contig106178:996..1095Fucus distichus monoicousCDSF-distichus_contig106178 997..1095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106178.524.1prot_F-distichus_contig106178.524.1Fucus distichus monoicouspolypeptideF-distichus_contig106178 243..1095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106178.524.1

>prot_F-distichus_contig106178.524.1 ID=prot_F-distichus_contig106178.524.1|Name=mRNA_F-distichus_contig106178.524.1|organism=Fucus distichus monoicous|type=polypeptide|length=126bp
MRRCAASSRFQIGELRKHQLLEVRVRCYALRHERLTPMASDPKTKPNGGS
EGDGFASDHGAERQQQVYFQCHSMRLQHPDDELGGNLLLVLPQTVVHRID
AWSPMMPPPRWNSTHGLVHWGLHSDR
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mRNA from alignment at F-distichus_contig106178:243..1095+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106178.524.1 ID=mRNA_F-distichus_contig106178.524.1|Name=mRNA_F-distichus_contig106178.524.1|organism=Fucus distichus monoicous|type=mRNA|length=853bp|location=Sequence derived from alignment at F-distichus_contig106178:243..1095+ (Fucus distichus monoicous)
ATGCGGCGCTGTGCGGCGTCAAGCAGGTTCCAAATCGGCGAGCTCCGCAA GCACCAGCTCCTCGAGGTGCGCGTGCGCTGCTACGCCCTGCGACACGAGC GCCTCACGCCGATGGCGTCGGACCCGAAAACCAAGCCCAACGGTGGTAGT GAGGGCGATGGCTTTGCCTCAGACCACGGTGCGGAGCGGCAGCAGCAGGT CTACTTCCAGTGCCACAGCATGCGTCTCCAGCACCCGGACGATGAGCTCG GCGGGAACCTCCTGCTGGTGCTTCCGCAGGTGTGTGTGTGTGTGTGTGTG TGTGTATGTGTGTGTGTTGCGGGAAATGTTTGGGGTTTTTGTTCTTGGTG TGGGTCGCCCGTGTGGTCCACTTCAGCCCGAGCCGGTCAGAGAAGGGTGG GTCTTAATCGTTATCGGCCTGTCTAGGGTGCCGGAGAGTCTCCAGACTTT CATACACAAGGCGGGACATTCCATGTAACTATCTAATATTGTACGATGTT CGCTTTACTCCACAAGGGATATATATTGGTCATTTACTTGATGCAAATTT CCCTTGATTTTGATTAGGGTTGTTTGCATTTCCAAAGAAAACGTTTAGCA TTGACGGTGTCAGGTTCCTTGCTTCAAGAAAATAATTCATGTACGCCCAC GACGCATCAAACGTATCTCCAAAATAGAACTCCATCTCATGTTTCTGGCT ATCGTCCCTGCCCCCCCCCCCGATGTTGAATTGTTTCAAACGACCGTGGA ACAGACCGTGGTACACAGAATCGATGCGTGGTCTCCGATGATGCCTCCGC CTCGCTGGAACTCCACTCACGGTCTGGTCCATTGGGGTCTCCATTCGGAT CGT
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Coding sequence (CDS) from alignment at F-distichus_contig106178:243..1095+

>mRNA_F-distichus_contig106178.524.1 ID=mRNA_F-distichus_contig106178.524.1|Name=mRNA_F-distichus_contig106178.524.1|organism=Fucus distichus monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at F-distichus_contig106178:243..1095+ (Fucus distichus monoicous)
ATGCGGCGCTGTGCGGCGTCAAGCAGGTTCCAAATCGGCGAGCTCCGCAA
GCACCAGCTCCTCGAGGTGCGCGTGCGCTGCTACGCCCTGCGACACGAGC
GCCTCACGCCGATGGCGTCGGACCCGAAAACCAAGCCCAACGGTGGTAGT
GAGGGCGATGGCTTTGCCTCAGACCACGGTGCGGAGCGGCAGCAGCAGGT
CTACTTCCAGTGCCACAGCATGCGTCTCCAGCACCCGGACGATGAGCTCG
GCGGGAACCTCCTGCTGGTGCTTCCGCAGATGCGGCGCTGTGCGGCGTCA
AGCAGGTTCCAAATCGGCGAGCTCCGCAAGCACCAGCTCCTCGAGGTGCG
CGTGCGCTGCTACGCCCTGCGACACGAGCGCCTCACGCCGATGGCGTCGG
ACCCGAAAACCAAGCCCAACGGTGGTAGTGAGGGCGATGGCTTTGCCTCA
GACCACGGTGCGGAGCGGCAGCAGCAGGTCTACTTCCAGTGCCACAGCAT
GCGTCTCCAGCACCCGGACGATGAGCTCGGCGGGAACCTCCTGCTGGTGC
TTCCGCAGACCGTGGTACACAGAATCGATGCGTGGTCTCCGATGATGCCT
CCGCCTCGCTGGAACTCCACTCACGGTCTGGTCCATTGGGGTCTCCATTC
GGATCGTACCGTGGTACACAGAATCGATGCGTGGTCTCCGATGATGCCTC
CGCCTCGCTGGAACTCCACTCACGGTCTGGTCCATTGGGGTCTCCATTCG
GATCGT
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