prot_F-distichus_contig9782.19226.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-distichus_contig9782.19226.1
Unique Nameprot_F-distichus_contig9782.19226.1
Typepolypeptide
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Sequence length86
Homology
[Close]
BLAST of mRNA_F-distichus_contig9782.19226.1 vs. uniprot
Match: D8LCF1_ECTSI (HTH TFE/IIEalpha-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF1_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 7.470e-38
Identity = 67/86 (77.91%), Postives = 79/86 (91.86%), Query Frame = 0 
Query:    1 QRYIKDSDEELGSRLNLKPQQVRAAMAELLSEGLAAKEKMSDQLYSGRTSEYWFIDLRHAVNVILLRVCYMKEMLSQRQEAKAARQ 86
            ++YIKD DEELGSRLNL+P+QVR+A+AELL+EG AAKE MSD++YSGR+S YW+IDLRHAVNVILLRV  MKE+LSQRQEAKAA Q
Sbjct:   39 EKYIKDKDEELGSRLNLQPKQVRSALAELLAEGFAAKEMMSDEIYSGRSSNYWYIDLRHAVNVILLRVFQMKEILSQRQEAKAAHQ 124
[Close]
BLAST of mRNA_F-distichus_contig9782.19226.1 vs. uniprot
Match: A0A6H5LCE2_9PHAE (HTH TFE/IIEalpha-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCE2_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.560e-34
Identity = 66/86 (76.74%), Postives = 79/86 (91.86%), Query Frame = 0 
Query:    1 QRYIKDSDEELGSRLNLKPQQVRAAMAELLSEGLAAKEKMSDQLYSGRTSEYWFIDLRHAVNVILLRVCYMKEMLSQRQEAKAARQ 86
            ++YIKD DE+LGSRLNL+P+QVR+A+AELL+EG AAKE MSD++YSGR+S YW+IDLRHAVNVILLRV  MKE+LSQRQEAKAA Q
Sbjct:   39 EKYIKDKDEDLGSRLNLQPKQVRSALAELLAEGFAAKEMMSDEIYSGRSSNYWYIDLRHAVNVILLRVFQMKEILSQRQEAKAAHQ 124
[Close]
BLAST of mRNA_F-distichus_contig9782.19226.1 vs. uniprot
Match: A0A836CC40_9STRA (TFIIE alpha subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC40_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.680e-19
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 0 
Query:    1 QRYIKDSDEELGSRLNLKPQQVRAAMAELLSEGLAAKEKMSDQLYSGRTSEYWFIDLRHAVNVILLRVCYMKEMLSQRQEAKAARQ 86
            ++Y+KD D++LG+RL L+P+QVRA +A L  EGLA +E+M D+   GR + YW++D RHAVNVI LR   M+  L + + A+ ARQ
Sbjct:   42 EKYLKDKDDDLGARLGLQPKQVRAVLARLEREGLARQEEMLDEFSGGRKANYWYVDYRHAVNVIRLRTYLMQRRLKEAERAELARQ 127
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9782.19226.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCF1_ECTSI7.470e-3877.91HTH TFE/IIEalpha-type domain-containing protein n=... [more]
A0A6H5LCE2_9PHAE3.560e-3476.74HTH TFE/IIEalpha-type domain-containing protein n=... [more]
A0A836CC40_9STRA6.680e-1950.00TFIIE alpha subunit-domain-containing protein n=1 ... [more]
back to top
InterPro
Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 71..86
IPR024550TFIIEalpha/SarR/Rpc3 HTH domainPFAMPF02002TFIIE_alphacoord: 7..78
e-value: 1.3E-7
score: 31.4

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 71..86
IPR024550TFIIEalpha/SarR/Rpc3 HTH domainPFAMPF02002TFIIE_alphacoord: 7..78
e-value: 1.3E-7
score: 31.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9782contigF-distichus_contig9782:11083..11340 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Fucus distichus monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9782.19226.1mRNA_F-distichus_contig9782.19226.1Fucus distichus monoicousmRNAF-distichus_contig9782 11083..11340 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-distichus_contig9782.19226.1 ID=prot_F-distichus_contig9782.19226.1|Name=mRNA_F-distichus_contig9782.19226.1|organism=Fucus distichus monoicous|type=polypeptide|length=86bp
QRYIKDSDEELGSRLNLKPQQVRAAMAELLSEGLAAKEKMSDQLYSGRTS
EYWFIDLRHAVNVILLRVCYMKEMLSQRQEAKAARQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024550TFIIEa/SarR/Rpc3_HTH_dom