mRNA_F-distichus_contig9782.19226.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9782.19226.1
Unique NamemRNA_F-distichus_contig9782.19226.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9782.19226.1 vs. uniprot
Match: D8LCF1_ECTSI (HTH TFE/IIEalpha-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF1_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 7.470e-38
Identity = 67/86 (77.91%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:    1 QRYIKDSDEELGSRLNLKPQQVRAAMAELLSEGLAAKEKMSDQLYSGRTSEYWFIDLRHAVNVILLRVCYMKEMLSQRQEAKAARQ 258
            ++YIKD DEELGSRLNL+P+QVR+A+AELL+EG AAKE MSD++YSGR+S YW+IDLRHAVNVILLRV  MKE+LSQRQEAKAA Q
Sbjct:   39 EKYIKDKDEELGSRLNLQPKQVRSALAELLAEGFAAKEMMSDEIYSGRSSNYWYIDLRHAVNVILLRVFQMKEILSQRQEAKAAHQ 124
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BLAST of mRNA_F-distichus_contig9782.19226.1 vs. uniprot
Match: A0A6H5LCE2_9PHAE (HTH TFE/IIEalpha-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCE2_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.560e-34
Identity = 66/86 (76.74%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:    1 QRYIKDSDEELGSRLNLKPQQVRAAMAELLSEGLAAKEKMSDQLYSGRTSEYWFIDLRHAVNVILLRVCYMKEMLSQRQEAKAARQ 258
            ++YIKD DE+LGSRLNL+P+QVR+A+AELL+EG AAKE MSD++YSGR+S YW+IDLRHAVNVILLRV  MKE+LSQRQEAKAA Q
Sbjct:   39 EKYIKDKDEDLGSRLNLQPKQVRSALAELLAEGFAAKEMMSDEIYSGRSSNYWYIDLRHAVNVILLRVFQMKEILSQRQEAKAAHQ 124
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BLAST of mRNA_F-distichus_contig9782.19226.1 vs. uniprot
Match: A0A836CC40_9STRA (TFIIE alpha subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC40_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.680e-19
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 QRYIKDSDEELGSRLNLKPQQVRAAMAELLSEGLAAKEKMSDQLYSGRTSEYWFIDLRHAVNVILLRVCYMKEMLSQRQEAKAARQ 258
            ++Y+KD D++LG+RL L+P+QVRA +A L  EGLA +E+M D+   GR + YW++D RHAVNVI LR   M+  L + + A+ ARQ
Sbjct:   42 EKYLKDKDDDLGARLGLQPKQVRAVLARLEREGLARQEEMLDEFSGGRKANYWYVDYRHAVNVIRLRTYLMQRRLKEAERAELARQ 127
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9782.19226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCF1_ECTSI7.470e-3877.91HTH TFE/IIEalpha-type domain-containing protein n=... [more]
A0A6H5LCE2_9PHAE3.560e-3476.74HTH TFE/IIEalpha-type domain-containing protein n=... [more]
A0A836CC40_9STRA6.680e-1950.00TFIIE alpha subunit-domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9782contigF-distichus_contig9782:11083..11340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTFIIEalpha/SarR/Rpc3 HTH domain
Ec32 orthologEc-26_004760.1
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.692225-CDS-F-distichus_contig9782:11082..113401622931157.692225-CDS-F-distichus_contig9782:11082..11340Fucus distichus monoicousCDSF-distichus_contig9782 11083..11340 +
1690886183.231705-CDS-F-distichus_contig9782:11082..113401690886183.231705-CDS-F-distichus_contig9782:11082..11340Fucus distichus monoicousCDSF-distichus_contig9782 11083..11340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9782.19226.1prot_F-distichus_contig9782.19226.1Fucus distichus monoicouspolypeptideF-distichus_contig9782 11083..11340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9782.19226.1

>prot_F-distichus_contig9782.19226.1 ID=prot_F-distichus_contig9782.19226.1|Name=mRNA_F-distichus_contig9782.19226.1|organism=Fucus distichus monoicous|type=polypeptide|length=86bp
QRYIKDSDEELGSRLNLKPQQVRAAMAELLSEGLAAKEKMSDQLYSGRTS
EYWFIDLRHAVNVILLRVCYMKEMLSQRQEAKAARQ
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mRNA from alignment at F-distichus_contig9782:11083..11340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9782.19226.1 ID=mRNA_F-distichus_contig9782.19226.1|Name=mRNA_F-distichus_contig9782.19226.1|organism=Fucus distichus monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at F-distichus_contig9782:11083..11340+ (Fucus distichus monoicous)
CAAAGGTATATCAAGGACAGCGACGAGGAGCTGGGGAGCCGGCTCAACCT
CAAGCCCCAGCAAGTCCGCGCCGCAATGGCCGAGCTGCTGTCGGAGGGCT
TGGCCGCCAAGGAGAAAATGTCGGACCAGCTCTACTCTGGCCGGACCAGC
GAGTACTGGTTCATCGACCTCAGGCACGCCGTAAACGTGATCCTTCTCCG
AGTGTGCTACATGAAAGAGATGCTCTCCCAGAGGCAAGAGGCTAAGGCCG
CTCGTCAG
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Coding sequence (CDS) from alignment at F-distichus_contig9782:11083..11340+

>mRNA_F-distichus_contig9782.19226.1 ID=mRNA_F-distichus_contig9782.19226.1|Name=mRNA_F-distichus_contig9782.19226.1|organism=Fucus distichus monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at F-distichus_contig9782:11083..11340+ (Fucus distichus monoicous)
CAAAGGTATATCAAGGACAGCGACGAGGAGCTGGGGAGCCGGCTCAACCT
CAAGCCCCAGCAAGTCCGCGCCGCAATGGCCGAGCTGCTGTCGGAGGGCT
TGGCCGCCAAGGAGAAAATGTCGGACCAGCTCTACTCTGGCCGGACCAGC
GAGTACTGGTTCATCGACCTCAGGCACGCCGTAAACGTGATCCTTCTCCG
AGTGTGCTACATGAAAGAGATGCTCTCCCAGAGGCAAGAGGCTAAGGCCG
CTCGTCAGCAAAGGTATATCAAGGACAGCGACGAGGAGCTGGGGAGCCGG
CTCAACCTCAAGCCCCAGCAAGTCCGCGCCGCAATGGCCGAGCTGCTGTC
GGAGGGCTTGGCCGCCAAGGAGAAAATGTCGGACCAGCTCTACTCTGGCC
GGACCAGCGAGTACTGGTTCATCGACCTCAGGCACGCCGTAAACGTGATC
CTTCTCCGAGTGTGCTACATGAAAGAGATGCTCTCCCAGAGGCAAGAGGC
TAAGGCCGCTCGTCAG
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