prot_F-distichus_contig96589.19117.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-distichus_contig96589.19117.1
Unique Nameprot_F-distichus_contig96589.19117.1
Typepolypeptide
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Sequence length61
Homology
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.550e-28
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0
Query:    1 MLEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 61
            MLEDELPNCHNQERVDEFAK FCYVNSK ARKKLVAALFNVPRQA DLLPMY+RLVAILD+
Sbjct:  873 MLEDELPNCHNQERVDEFAKKFCYVNSKSARKKLVAALFNVPRQARDLLPMYARLVAILDQ 933          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.140e-16
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 0
Query:    2 LEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 61
            L +ELP C N+ER D FA  FC+ NSK AR+KLV ALF  PRQ+LDLLP Y+RLVA LD+
Sbjct:  450 LREELPACFNRERTDAFAIKFCHHNSKSARRKLVRALFEAPRQSLDLLPQYARLVATLDQ 509          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: UPI00125E3B65 (regulator of nonsense transcripts UPF2 isoform X1 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E3B65)

HSP 1 Score: 72.8 bits (177), Expect = 1.610e-13
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 0
Query:    6 LPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILD 60
            LPNC +++ +D+    FCYVNSK  RKKLV ALFNVPR +L+LLP YSR+VA L 
Sbjct:  482 LPNCVSRDLIDQLTVEFCYVNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLS 536          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A2P6NN14_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NN14_9EUKA)

HSP 1 Score: 72.8 bits (177), Expect = 1.610e-13
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 0
Query:    6 LPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 61
            LP C N++ +DE AK+FCYVNSK  RKKLV ALF+VPR  L LLP Y+R+V++L+K
Sbjct:  517 LPTCVNRDLIDEAAKDFCYVNSKINRKKLVKALFSVPRTQLVLLPYYARMVSVLNK 572          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A388KY68_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KY68_CHABU)

HSP 1 Score: 72.8 bits (177), Expect = 1.610e-13
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 0
Query:    6 LPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 61
            LP C +++ +D+ A +FCY+NSK  RKKLV ALF+VPR AL+LLP YSRLVA L +
Sbjct:  593 LPGCVSRDMIDQLAVDFCYINSKSNRKKLVRALFSVPRTALELLPYYSRLVATLSQ 648          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A1C7N1M8_9FUNG (Regulator of nonsense transcripts 2 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N1M8_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-13
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 0
Query:    6 LPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILD 60
            LP C N++ +D  A +FCY+N+K ARKKLV  L NV RQ LDLLP YSRL+AIL+
Sbjct:  496 LPTCANRDLIDSVAVDFCYMNNKNARKKLVKTLLNVQRQRLDLLPYYSRLIAILN 550          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A8H7EU12_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EU12_9FUNG)

HSP 1 Score: 72.0 bits (175), Expect = 3.010e-13
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 0
Query:    6 LPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILD 60
            LPN  N++ +D  A  FCYVNSK ARK+LV  L NVPRQ LDLLP Y+RL+ IL+
Sbjct:  535 LPNLGNRDMIDSAAVEFCYVNSKAARKRLVKTLLNVPRQRLDLLPYYARLITILN 589          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A168QM14_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168QM14_ABSGL)

HSP 1 Score: 71.6 bits (174), Expect = 4.100e-13
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 0
Query:    6 LPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 61
            L N  N++ +D  A  FCY+NSKGARK+L+ AL N+PRQ +DLLP Y+RL+AIL++
Sbjct:  437 LTNLGNRDMIDSAAVEFCYMNSKGARKRLIKALLNIPRQRVDLLPYYARLIAILNQ 492          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A1X2H9L6_SYNRA (Armadillo-type protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H9L6_SYNRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.100e-13
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 0
Query:    6 LPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 61
            LP   N++ +D  A +FCY+NSK  RK+LV AL NVPRQ +DLLP YSRL+AIL +
Sbjct:  522 LPTMGNRDTIDSVAVDFCYINSKATRKRLVKALLNVPRQRVDLLPYYSRLIAILSQ 577          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A0P0VMD7_ORYSJ (Os02g0631601 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0VMD7_ORYSJ)

HSP 1 Score: 69.7 bits (169), Expect = 4.640e-13
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 0
Query:    6 LPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILD 60
            LP C +++ +D+    FCY+NSK +RKKLV  LFNVPR +L+LLP YSRLVA L 
Sbjct:  133 LPGCVSRDLIDQLTVEFCYLNSKASRKKLVRTLFNVPRTSLELLPYYSRLVATLS 187          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEF3_ECTSI1.550e-2891.80Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YRH9_9STRA3.140e-1665.00Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
UPI00125E3B651.610e-1361.82regulator of nonsense transcripts UPF2 isoform X1 ... [more]
A0A2P6NN14_9EUKA1.610e-1362.50Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A388KY68_CHABU1.610e-1360.71Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A1C7N1M8_9FUNG2.200e-1361.82Regulator of nonsense transcripts 2 n=1 Tax=Choane... [more]
A0A8H7EU12_9FUNG3.010e-1361.82Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]
A0A168QM14_ABSGL4.100e-1357.14Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A1X2H9L6_SYNRA4.100e-1358.93Armadillo-type protein n=1 Tax=Syncephalastrum rac... [more]
A0A0P0VMD7_ORYSJ4.640e-1358.18Os02g0631601 protein n=1 Tax=Oryza sativa subsp. j... [more]

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InterPro
Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016021MIF4G-like domain superfamilyGENE3D1.25.40.180coord: 4..61
e-value: 2.7E-5
score: 25.3
IPR039762Nonsense-mediated mRNA decay protein Nmd2/UPF2PANTHERPTHR12839NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2coord: 4..61
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 5..60

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016021MIF4G-like domain superfamilyGENE3D1.25.40.180coord: 4..61
e-value: 2.7E-5
score: 25.3
IPR039762Nonsense-mediated mRNA decay protein Nmd2/UPF2PANTHERPTHR12839NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2coord: 4..61
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 5..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96589contigF-distichus_contig96589:629..1053 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Fucus distichus monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96589.19117.1mRNA_F-distichus_contig96589.19117.1Fucus distichus monoicousmRNAF-distichus_contig96589 629..1068 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-distichus_contig96589.19117.1 ID=prot_F-distichus_contig96589.19117.1|Name=mRNA_F-distichus_contig96589.19117.1|organism=Fucus distichus monoicous|type=polypeptide|length=61bp
MLEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLP
MYSRLVAILDK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016021MIF4-like_sf
IPR039762Nmd2/UPF2
IPR016024ARM-type_fold