mRNA_F-distichus_contig96589.19117.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI) HSP 1 Score: 121 bits (303), Expect = 1.810e-30 Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1
Query: 1 ARLTLMLEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 198
+RL LMLEDELPNCHNQERVDEFAK FCYVNSK ARKKLVAALFNVPRQA DLLPMY+RLVAILD+
Sbjct: 868 SRLMLMLEDELPNCHNQERVDEFAKKFCYVNSKSARKKLVAALFNVPRQARDLLPMYARLVAILDQ 933
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 2.090e-16 Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query: 19 LEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 198
L +ELP C N+ER D FA FC+ NSK AR+KLV ALF PRQ+LDLLP Y+RLVA LD+
Sbjct: 450 LREELPACFNRERTDAFAIKFCHHNSKSARRKLVRALFEAPRQSLDLLPQYARLVATLDQ 509
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: UPI00125E3B65 (regulator of nonsense transcripts UPF2 isoform X1 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E3B65) HSP 1 Score: 73.6 bits (179), Expect = 1.070e-13 Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 19 LEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILD 195
L LPNC +++ +D+ FCYVNSK RKKLV ALFNVPR +L+LLP YSR+VA L
Sbjct: 478 LLQRLPNCVSRDLIDQLTVEFCYVNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLS 536
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A2P6NN14_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NN14_9EUKA) HSP 1 Score: 73.6 bits (179), Expect = 1.070e-13 Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1
Query: 28 ELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 198
+LP C N++ +DE AK+FCYVNSK RKKLV ALF+VPR L LLP Y+R+V++L+K
Sbjct: 516 KLPTCVNRDLIDEAAKDFCYVNSKINRKKLVKALFSVPRTQLVLLPYYARMVSVLNK 572
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A388KY68_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KY68_CHABU) HSP 1 Score: 73.6 bits (179), Expect = 1.070e-13 Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query: 19 LEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 198
L LP C +++ +D+ A +FCY+NSK RKKLV ALF+VPR AL+LLP YSRLVA L +
Sbjct: 589 LLQRLPGCVSRDMIDQLAVDFCYINSKSNRKKLVRALFSVPRTALELLPYYSRLVATLSQ 648
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A8H7EU12_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EU12_9FUNG) HSP 1 Score: 73.2 bits (178), Expect = 1.470e-13 Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 1 ARLTLMLEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILD 195
A+L +L LPN N++ +D A FCYVNSK ARK+LV L NVPRQ LDLLP Y+RL+ IL+
Sbjct: 526 AQLDALLS-RLPNLGNRDMIDSAAVEFCYVNSKAARKRLVKTLLNVPRQRLDLLPYYARLITILN 589
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A1C7N1M8_9FUNG (Regulator of nonsense transcripts 2 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N1M8_9FUNG) HSP 1 Score: 72.8 bits (177), Expect = 1.990e-13 Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1
Query: 31 LPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILD 195
LP C N++ +D A +FCY+N+K ARKKLV L NV RQ LDLLP YSRL+AIL+
Sbjct: 496 LPTCANRDLIDSVAVDFCYMNNKNARKKLVKTLLNVQRQRLDLLPYYSRLIAILN 550
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A6U5Q234_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5Q234_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 2.000e-13 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 4 RLTLMLEDELPNCHNQERVDEFAKNFC--YVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 198
RLT++LE ELP C+ +E+ DE A+ F + +SK +RKKLV LF VPR LDLLP YSR+ +I+D+
Sbjct: 589 RLTVLLEQELPECNRREQCDELAEKFIVNHGSSKNSRKKLVGVLFQVPRTRLDLLPYYSRITSIVDR 655
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A168QM14_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168QM14_ABSGL) HSP 1 Score: 72.4 bits (176), Expect = 2.720e-13 Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 1 ARLTLMLEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 198
A+L +L L N N++ +D A FCY+NSKGARK+L+ AL N+PRQ +DLLP Y+RL+AIL++
Sbjct: 428 AQLDALL-GRLTNLGNRDMIDSAAVEFCYMNSKGARKRLIKALLNIPRQRVDLLPYYARLIAILNQ 492
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A1X2H9L6_SYNRA (Armadillo-type protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H9L6_SYNRA) HSP 1 Score: 72.4 bits (176), Expect = 2.720e-13 Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 1 ARLTLMLEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 198
A+L +L LP N++ +D A +FCY+NSK RK+LV AL NVPRQ +DLLP YSRL+AIL +
Sbjct: 513 AQLDALLA-RLPTMGNRDTIDSVAVDFCYINSKATRKRLVKALLNVPRQRVDLLPYYSRLIAILSQ 577 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig96589.19117.1 >prot_F-distichus_contig96589.19117.1 ID=prot_F-distichus_contig96589.19117.1|Name=mRNA_F-distichus_contig96589.19117.1|organism=Fucus distichus monoicous|type=polypeptide|length=61bp MLEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPback to top mRNA from alignment at F-distichus_contig96589:629..1068- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig96589.19117.1 ID=mRNA_F-distichus_contig96589.19117.1|Name=mRNA_F-distichus_contig96589.19117.1|organism=Fucus distichus monoicous|type=mRNA|length=440bp|location=Sequence derived from alignment at F-distichus_contig96589:629..1068- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig96589:629..1068- >mRNA_F-distichus_contig96589.19117.1 ID=mRNA_F-distichus_contig96589.19117.1|Name=mRNA_F-distichus_contig96589.19117.1|organism=Fucus distichus monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at F-distichus_contig96589:629..1068- (Fucus distichus monoicous)back to top |