mRNA_F-distichus_contig96589.19117.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96589.19117.1
Unique NamemRNA_F-distichus_contig96589.19117.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.810e-30
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    1 ARLTLMLEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 198
            +RL LMLEDELPNCHNQERVDEFAK FCYVNSK ARKKLVAALFNVPRQA DLLPMY+RLVAILD+
Sbjct:  868 SRLMLMLEDELPNCHNQERVDEFAKKFCYVNSKSARKKLVAALFNVPRQARDLLPMYARLVAILDQ 933          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.090e-16
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   19 LEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 198
            L +ELP C N+ER D FA  FC+ NSK AR+KLV ALF  PRQ+LDLLP Y+RLVA LD+
Sbjct:  450 LREELPACFNRERTDAFAIKFCHHNSKSARRKLVRALFEAPRQSLDLLPQYARLVATLDQ 509          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: UPI00125E3B65 (regulator of nonsense transcripts UPF2 isoform X1 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E3B65)

HSP 1 Score: 73.6 bits (179), Expect = 1.070e-13
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   19 LEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILD 195
            L   LPNC +++ +D+    FCYVNSK  RKKLV ALFNVPR +L+LLP YSR+VA L 
Sbjct:  478 LLQRLPNCVSRDLIDQLTVEFCYVNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLS 536          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A2P6NN14_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NN14_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 1.070e-13
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   28 ELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 198
            +LP C N++ +DE AK+FCYVNSK  RKKLV ALF+VPR  L LLP Y+R+V++L+K
Sbjct:  516 KLPTCVNRDLIDEAAKDFCYVNSKINRKKLVKALFSVPRTQLVLLPYYARMVSVLNK 572          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A388KY68_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KY68_CHABU)

HSP 1 Score: 73.6 bits (179), Expect = 1.070e-13
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   19 LEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 198
            L   LP C +++ +D+ A +FCY+NSK  RKKLV ALF+VPR AL+LLP YSRLVA L +
Sbjct:  589 LLQRLPGCVSRDMIDQLAVDFCYINSKSNRKKLVRALFSVPRTALELLPYYSRLVATLSQ 648          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A8H7EU12_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EU12_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 1.470e-13
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 ARLTLMLEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILD 195
            A+L  +L   LPN  N++ +D  A  FCYVNSK ARK+LV  L NVPRQ LDLLP Y+RL+ IL+
Sbjct:  526 AQLDALLS-RLPNLGNRDMIDSAAVEFCYVNSKAARKRLVKTLLNVPRQRLDLLPYYARLITILN 589          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A1C7N1M8_9FUNG (Regulator of nonsense transcripts 2 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N1M8_9FUNG)

HSP 1 Score: 72.8 bits (177), Expect = 1.990e-13
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   31 LPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILD 195
            LP C N++ +D  A +FCY+N+K ARKKLV  L NV RQ LDLLP YSRL+AIL+
Sbjct:  496 LPTCANRDLIDSVAVDFCYMNNKNARKKLVKTLLNVQRQRLDLLPYYSRLIAILN 550          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A6U5Q234_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5Q234_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.000e-13
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    4 RLTLMLEDELPNCHNQERVDEFAKNFC--YVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 198
            RLT++LE ELP C+ +E+ DE A+ F   + +SK +RKKLV  LF VPR  LDLLP YSR+ +I+D+
Sbjct:  589 RLTVLLEQELPECNRREQCDELAEKFIVNHGSSKNSRKKLVGVLFQVPRTRLDLLPYYSRITSIVDR 655          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A168QM14_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168QM14_ABSGL)

HSP 1 Score: 72.4 bits (176), Expect = 2.720e-13
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 ARLTLMLEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 198
            A+L  +L   L N  N++ +D  A  FCY+NSKGARK+L+ AL N+PRQ +DLLP Y+RL+AIL++
Sbjct:  428 AQLDALL-GRLTNLGNRDMIDSAAVEFCYMNSKGARKRLIKALLNIPRQRVDLLPYYARLIAILNQ 492          
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Match: A0A1X2H9L6_SYNRA (Armadillo-type protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H9L6_SYNRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.720e-13
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 ARLTLMLEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLPMYSRLVAILDK 198
            A+L  +L   LP   N++ +D  A +FCY+NSK  RK+LV AL NVPRQ +DLLP YSRL+AIL +
Sbjct:  513 AQLDALLA-RLPTMGNRDTIDSVAVDFCYINSKATRKRLVKALLNVPRQRVDLLPYYSRLIAILSQ 577          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96589.19117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEF3_ECTSI1.810e-3089.39Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YRH9_9STRA2.090e-1665.00Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
UPI00125E3B651.070e-1359.32regulator of nonsense transcripts UPF2 isoform X1 ... [more]
A0A2P6NN14_9EUKA1.070e-1361.40Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A388KY68_CHABU1.070e-1358.33Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A8H7EU12_9FUNG1.470e-1356.92Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]
A0A1C7N1M8_9FUNG1.990e-1361.82Regulator of nonsense transcripts 2 n=1 Tax=Choane... [more]
A0A6U5Q234_9STRA2.000e-1353.73Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A168QM14_ABSGL2.720e-1353.03Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A1X2H9L6_SYNRA2.720e-1354.55Armadillo-type protein n=1 Tax=Syncephalastrum rac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96589contigF-distichus_contig96589:629..1068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue3.8e-24
Seed eggNOG ortholog2880.D8LEF3
Preferred nameUPF2
KEGG koko:K14327
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006259,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007274,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009751,GO:0009753,GO:0009755,GO:0009863,GO:0009867,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019899,GO:0023052,GO:0031503,GO:0031974,GO:0031981,GO:0032870,GO:0032991,GO:0033036,GO:0034427,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0035690,GO:0035770,GO:0036464,GO:0042162,GO:0042221,GO:0042493,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0048571,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070727,GO:0070887,GO:0071166,GO:0071229,GO:0071236,GO:0071310,GO:0071395,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097159,GO:0098542,GO:0098916,GO:0099536,GO:0099537,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1901701,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsKOG2051@1,KOG2051@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons2
Model size198
Cds size183
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96589.19117.1prot_F-distichus_contig96589.19117.1Fucus distichus monoicouspolypeptideF-distichus_contig96589 629..1053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.9462378-CDS-F-distichus_contig96589:628..7541622931143.9462378-CDS-F-distichus_contig96589:628..754Fucus distichus monoicousCDSF-distichus_contig96589 629..754 -
1690886176.9821076-CDS-F-distichus_contig96589:628..7541690886176.9821076-CDS-F-distichus_contig96589:628..754Fucus distichus monoicousCDSF-distichus_contig96589 629..754 -
1622931143.963367-CDS-F-distichus_contig96589:996..10531622931143.963367-CDS-F-distichus_contig96589:996..1053Fucus distichus monoicousCDSF-distichus_contig96589 997..1053 -
1690886176.9994829-CDS-F-distichus_contig96589:996..10531690886176.9994829-CDS-F-distichus_contig96589:996..1053Fucus distichus monoicousCDSF-distichus_contig96589 997..1053 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.9797015-UTR-F-distichus_contig96589:1053..10681622931143.9797015-UTR-F-distichus_contig96589:1053..1068Fucus distichus monoicousUTRF-distichus_contig96589 1054..1068 -
1690886177.011521-UTR-F-distichus_contig96589:1053..10681690886177.011521-UTR-F-distichus_contig96589:1053..1068Fucus distichus monoicousUTRF-distichus_contig96589 1054..1068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96589.19117.1

>prot_F-distichus_contig96589.19117.1 ID=prot_F-distichus_contig96589.19117.1|Name=mRNA_F-distichus_contig96589.19117.1|organism=Fucus distichus monoicous|type=polypeptide|length=61bp
MLEDELPNCHNQERVDEFAKNFCYVNSKGARKKLVAALFNVPRQALDLLP
MYSRLVAILDK
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mRNA from alignment at F-distichus_contig96589:629..1068-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96589.19117.1 ID=mRNA_F-distichus_contig96589.19117.1|Name=mRNA_F-distichus_contig96589.19117.1|organism=Fucus distichus monoicous|type=mRNA|length=440bp|location=Sequence derived from alignment at F-distichus_contig96589:629..1068- (Fucus distichus monoicous)
GCGCGGTTGACGCTCATGCTGGAGGACGAGCTTCCCAACTGCCATAATCA GGAGAGGGTGGACGAGTTCGCGGTGAGCACTTTTCCAGATGTGGGTAGAA GGGAAATAAAAGAAAGAGAACGGGGAACACAGCAGTCGTTAGCGCAATAT TATTAGTAGTCAATAGATGAAGTGACGTATCGCCTAATTCGTCTCCATTT TTTTCTCTTCCCCTTCGCCTCCCTGTATTTTCTATTTTATTACTGGTATA TGTTTGTTTATTTTATTTCGATCTTGTTTTACATATGTGTGACGCGACGG CCGGTGTCAAGCAGAAGAACTTCTGCTACGTGAACAGCAAGGGAGCGAGG AAGAAGCTCGTGGCGGCCCTCTTCAACGTGCCTCGACAAGCGCTCGACCT TCTCCCCATGTACTCCCGCCTTGTCGCCATCCTCGACAAG
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Coding sequence (CDS) from alignment at F-distichus_contig96589:629..1068-

>mRNA_F-distichus_contig96589.19117.1 ID=mRNA_F-distichus_contig96589.19117.1|Name=mRNA_F-distichus_contig96589.19117.1|organism=Fucus distichus monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at F-distichus_contig96589:629..1068- (Fucus distichus monoicous)
ATGCTGGAGGACGAGCTTCCCAACTGCCATAATCAGGAGAGGGTGGACGA
GTTCGCGATGCTGGAGGACGAGCTTCCCAACTGCCATAATCAGGAGAGGG
TGGACGAGTTCGCGAAGAACTTCTGCTACGTGAACAGCAAGGGAGCGAGG
AAGAAGCTCGTGGCGGCCCTCTTCAACGTGCCTCGACAAGCGCTCGACCT
TCTCCCCATGTACTCCCGCCTTGTCGCCATCCTCGACAAGAAGAACTTCT
GCTACGTGAACAGCAAGGGAGCGAGGAAGAAGCTCGTGGCGGCCCTCTTC
AACGTGCCTCGACAAGCGCTCGACCTTCTCCCCATGTACTCCCGCCTTGT
CGCCATCCTCGACAAG
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