prot_F-distichus_contig1066.561.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-distichus_contig1066.561.1
Unique Nameprot_F-distichus_contig1066.561.1
Typepolypeptide
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Sequence length179
Homology
BLAST of mRNA_F-distichus_contig1066.561.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.550e-9
Identity = 35/120 (29.17%), Postives = 66/120 (55.00%), Query Frame = 0
Query:   53 MMEVDKLAADLHRLGDKSVTELRKCVLIVSGMSADFEMECRILENNPDGLNWAEIERVIGNQYNRLLRQQQDSKALLASRGTVTANREKGKNRRLYNKFDGKCFNCGKEGHRAVDCRSAM 172
            MM+ DKL  ++  + D  + +    V+++  +  DF+   RILE+ P G++    +  +  ++ R+  ++    AL A+RG ++  + +     L  +F+GKCF CGK GHR  +CR+ +
Sbjct:    4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILESMP-GIDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHRKNECRTRL 121          
BLAST of mRNA_F-distichus_contig1066.561.1 vs. uniprot
Match: F0X0S7_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.440e-7
Identity = 32/120 (26.67%), Postives = 63/120 (52.50%), Query Frame = 0
Query:   53 MMEVDKLAADLHRLGDKSVTELRKCVLIVSGMSADFEMECRILENNPDGLNWAEIERVIGNQYNRLLRQQQDSKALLASRGTVTANREKGKNRRLYNKFDGKCFNCGKEGHRAVDCRSAM 172
            MM+ DKL  ++  +GD  + +    V+++  +  +F+   RILEN   G++    +     ++ R+  ++     L  +RG ++  + +     +  +F+GKCF CGK GHR  +CR+ +
Sbjct:    4 MMKFDKLTMEMAAMGD-GLNDQEMLVILLGSLPLNFDPIVRILENIT-GIDLMSAKETPRREWGRIKNRESSEVTLEVTRGRISKKKYQRNPGTVGEEFNGKCFQCGKRGHRKYECRTRL 121          
BLAST of mRNA_F-distichus_contig1066.561.1 vs. uniprot
Match: A0A329S4C9_9STRA (CCHC-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S4C9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.810e-6
Identity = 39/160 (24.38%), Postives = 79/160 (49.38%), Query Frame = 0
Query:   15 AWRNLELHYKAKGTREILRLSHEINGKTIEHGSDSFKFMMEVDKLAADLHRLGDKSVTELRKCVLIVSGMSADFEMECRILENNPDGLNWAEIERVIGNQYNRLLRQQQDSKALLASRGTVTANREKGKNRRLYNKFDGKCFNCGKEGHRAVDCRSAMKK 174
            AW  LE  +  +     + L+ ++N  T+  G + +  +    +L+  L   G+  + E R+ V+++  +  ++ +  +I+E+   G+   +   ++  +Y     + +D++    S       R++ KN +  +K  GKCFNCGK GH+  +CRS  KK
Sbjct:   66 AWEVLEGFFNRQTMHNRVALNQKMNEFTLASGGNLYDHLTRFKELSTALAAAGEP-LDEQRQLVILLGNLPREYHVTVKIIESIA-GVTMLQAAEMLKREYAES--RHEDTEVAFHSA------RQRNKNTKPQSKCRGKCFNCGKIGHKEAECRSPKKK 215          
BLAST of mRNA_F-distichus_contig1066.561.1 vs. uniprot
Match: F0X119_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X119_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.770e-6
Identity = 30/92 (32.61%), Postives = 55/92 (59.78%), Query Frame = 0
Query:   78 VLIVSGMSADFEMECRILENNPDGLNWAEIERVIGNQYNRLLRQQQDSKALLASRGTVTANREKGKNRRLYNKFDGKCFNCGKEGHRAVDCR 169
            ++++   S D++   +I+ENN  G++    + ++  +Y R +R+++   AL  +R   ++   K K  ++ + F GK FNCGK+GHR VDCR
Sbjct:   17 MMLLGSFSNDYDNIVKIIENN-QGMDSFRTKEMLNREYERSIRKEKSQSALKTTRKMDSSGARKQK--QIDHGFQGKFFNCGKDGHRKVDCR 105          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1066.561.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
F0W6E8_9STRA1.550e-929.17Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
F0X0S7_9STRA3.440e-726.67Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
A0A329S4C9_9STRA1.810e-624.38CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
F0X119_9STRA6.770e-632.61Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
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InterPro
Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 154..170
e-value: 2.9E-5
score: 33.5
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 153..169
e-value: 8.0E-7
score: 28.9
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 154..170
score: 10.559
NoneNo IPR availableGENE3D4.10.60.10coord: 90..178
e-value: 9.2E-6
score: 27.3
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 3..117
e-value: 7.9E-11
score: 41.8
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 140..176

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 154..170
e-value: 2.9E-5
score: 33.5
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 153..169
e-value: 8.0E-7
score: 28.9
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 154..170
score: 10.559
NoneNo IPR availableGENE3D4.10.60.10coord: 90..178
e-value: 9.2E-6
score: 27.3
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 3..117
e-value: 7.9E-11
score: 41.8
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 140..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1066contigF-distichus_contig1066:54..590 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Fucus distichus monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1066.561.1mRNA_F-distichus_contig1066.561.1Fucus distichus monoicousmRNAF-distichus_contig1066 54..590 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-distichus_contig1066.561.1 ID=prot_F-distichus_contig1066.561.1|Name=mRNA_F-distichus_contig1066.561.1|organism=Fucus distichus monoicous|type=polypeptide|length=179bp
MVLEIVQRCHAPHEAWRNLELHYKAKGTREILRLSHEINGKTIEHGSDSF
KFMMEVDKLAADLHRLGDKSVTELRKCVLIVSGMSADFEMECRILENNPD
GLNWAEIERVIGNQYNRLLRQQQDSKALLASRGTVTANREKGKNRRLYNK
FDGKCFNCGKEGHRAVDCRSAMKKGEKSG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf