mRNA_F-distichus_contig1066.561.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1066.561.1
Unique NamemRNA_F-distichus_contig1066.561.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig1066.561.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.550e-9
Identity = 35/120 (29.17%), Postives = 66/120 (55.00%), Query Frame = 1 
Query:  157 MMEVDKLAADLHRLGDKSVTELRKCVLIVSGMSADFEMECRILENNPDGLNWAEIERVIGNQYNRLLRQQQDSKALLASRGTVTANREKGKNRRLYNKFDGKCFNCGKEGHRAVDCRSAM 516
            MM+ DKL  ++  + D  + +    V+++  +  DF+   RILE+ P G++    +  +  ++ R+  ++    AL A+RG ++  + +     L  +F+GKCF CGK GHR  +CR+ +
Sbjct:    4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILESMP-GIDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHRKNECRTRL 121
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BLAST of mRNA_F-distichus_contig1066.561.1 vs. uniprot
Match: F0X0S7_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.440e-7
Identity = 32/120 (26.67%), Postives = 63/120 (52.50%), Query Frame = 1 
Query:  157 MMEVDKLAADLHRLGDKSVTELRKCVLIVSGMSADFEMECRILENNPDGLNWAEIERVIGNQYNRLLRQQQDSKALLASRGTVTANREKGKNRRLYNKFDGKCFNCGKEGHRAVDCRSAM 516
            MM+ DKL  ++  +GD  + +    V+++  +  +F+   RILEN   G++    +     ++ R+  ++     L  +RG ++  + +     +  +F+GKCF CGK GHR  +CR+ +
Sbjct:    4 MMKFDKLTMEMAAMGD-GLNDQEMLVILLGSLPLNFDPIVRILENIT-GIDLMSAKETPRREWGRIKNRESSEVTLEVTRGRISKKKYQRNPGTVGEEFNGKCFQCGKRGHRKYECRTRL 121
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BLAST of mRNA_F-distichus_contig1066.561.1 vs. uniprot
Match: A0A329S4C9_9STRA (CCHC-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S4C9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.810e-6
Identity = 39/160 (24.38%), Postives = 79/160 (49.38%), Query Frame = 1 
Query:   43 AWRNLELHYKAKGTREILRLSHEINGKTIEHGSDSFKFMMEVDKLAADLHRLGDKSVTELRKCVLIVSGMSADFEMECRILENNPDGLNWAEIERVIGNQYNRLLRQQQDSKALLASRGTVTANREKGKNRRLYNKFDGKCFNCGKEGHRAVDCRSAMKK 522
            AW  LE  +  +     + L+ ++N  T+  G + +  +    +L+  L   G+  + E R+ V+++  +  ++ +  +I+E+   G+   +   ++  +Y     + +D++    S       R++ KN +  +K  GKCFNCGK GH+  +CRS  KK
Sbjct:   66 AWEVLEGFFNRQTMHNRVALNQKMNEFTLASGGNLYDHLTRFKELSTALAAAGEP-LDEQRQLVILLGNLPREYHVTVKIIESIA-GVTMLQAAEMLKREYAES--RHEDTEVAFHSA------RQRNKNTKPQSKCRGKCFNCGKIGHKEAECRSPKKK 215
[Close]
BLAST of mRNA_F-distichus_contig1066.561.1 vs. uniprot
Match: F0X119_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X119_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.770e-6
Identity = 30/92 (32.61%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:  232 VLIVSGMSADFEMECRILENNPDGLNWAEIERVIGNQYNRLLRQQQDSKALLASRGTVTANREKGKNRRLYNKFDGKCFNCGKEGHRAVDCR 507
            ++++   S D++   +I+ENN  G++    + ++  +Y R +R+++   AL  +R   ++   K K  ++ + F GK FNCGK+GHR VDCR
Sbjct:   17 MMLLGSFSNDYDNIVKIIENN-QGMDSFRTKEMLNREYERSIRKEKSQSALKTTRKMDSSGARKQK--QIDHGFQGKFFNCGKDGHRKVDCR 105
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1066.561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
F0W6E8_9STRA1.550e-929.17Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
F0X0S7_9STRA3.440e-726.67Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
A0A329S4C9_9STRA1.810e-624.38CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
F0X119_9STRA6.770e-632.61Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1066contigF-distichus_contig1066:54..590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size537
Cds size537
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.9936578-CDS-F-distichus_contig1066:53..5901622928992.9936578-CDS-F-distichus_contig1066:53..590Fucus distichus monoicousCDSF-distichus_contig1066 54..590 -
1690885096.7177415-CDS-F-distichus_contig1066:53..5901690885096.7177415-CDS-F-distichus_contig1066:53..590Fucus distichus monoicousCDSF-distichus_contig1066 54..590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1066.561.1prot_F-distichus_contig1066.561.1Fucus distichus monoicouspolypeptideF-distichus_contig1066 54..590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1066.561.1

>prot_F-distichus_contig1066.561.1 ID=prot_F-distichus_contig1066.561.1|Name=mRNA_F-distichus_contig1066.561.1|organism=Fucus distichus monoicous|type=polypeptide|length=179bp
MVLEIVQRCHAPHEAWRNLELHYKAKGTREILRLSHEINGKTIEHGSDSF
KFMMEVDKLAADLHRLGDKSVTELRKCVLIVSGMSADFEMECRILENNPD
GLNWAEIERVIGNQYNRLLRQQQDSKALLASRGTVTANREKGKNRRLYNK
FDGKCFNCGKEGHRAVDCRSAMKKGEKSG
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mRNA from alignment at F-distichus_contig1066:54..590-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1066.561.1 ID=mRNA_F-distichus_contig1066.561.1|Name=mRNA_F-distichus_contig1066.561.1|organism=Fucus distichus monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at F-distichus_contig1066:54..590- (Fucus distichus monoicous)
ATGGTCCTCGAAATCGTGCAGCGTTGCCACGCGCCACATGAAGCATGGCG
AAACCTTGAACTTCACTATAAAGCAAAAGGAACTAGAGAAATTCTTCGCC
TGTCCCATGAAATCAACGGGAAAACAATAGAACACGGTAGTGATTCATTT
AAGTTCATGATGGAAGTTGACAAGCTGGCAGCAGACCTTCACCGTTTGGG
TGACAAATCAGTAACAGAACTAAGAAAGTGTGTGCTCATCGTATCTGGCA
TGTCTGCTGATTTTGAAATGGAATGTCGCATACTAGAAAACAACCCTGAT
GGTCTCAACTGGGCAGAGATTGAACGTGTTATAGGTAATCAGTACAACAG
ACTTCTCAGGCAGCAACAGGACTCAAAGGCATTGTTAGCGTCGAGGGGCA
CCGTCACGGCAAATCGAGAAAAGGGGAAGAACAGAAGACTCTACAACAAG
TTCGACGGAAAATGCTTCAATTGCGGGAAGGAAGGTCACCGCGCTGTAGA
CTGCAGGAGCGCGATGAAAAAGGGTGAAAAATCCGGA
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Coding sequence (CDS) from alignment at F-distichus_contig1066:54..590-

>mRNA_F-distichus_contig1066.561.1 ID=mRNA_F-distichus_contig1066.561.1|Name=mRNA_F-distichus_contig1066.561.1|organism=Fucus distichus monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at F-distichus_contig1066:54..590- (Fucus distichus monoicous)
ATGGTCCTCGAAATCGTGCAGCGTTGCCACGCGCCACATGAAGCATGGCG
AAACCTTGAACTTCACTATAAAGCAAAAGGAACTAGAGAAATTCTTCGCC
TGTCCCATGAAATCAACGGGAAAACAATAGAACACGGTAGTGATTCATTT
AAGTTCATGATGGAAGTTGACAAGCTGGCAGCAGACCTTCACCGTTTGGG
TGACAAATCAGTAACAGAACTAAGAAAGTGTGTGCTCATCGTATCTGGCA
TGTCTGCTGATTTTGAAATGGAATGTCGCATACTAGAAAACAACCCTGAT
GGTCTCAACTGGGCAGAGATTGAACGTGTTATAGGTAATCAGTACAACAG
ACTTCTCAGGCAGCAACAGGACTCAAAGGCATTGTTAGCGTCGAGGGGCA
CCGTCACGGCAAATCGAGAAAAGGGGAAGAACAGAAGACTCTACAACAAG
TTCGACGGAAAATGCTTCAATTGCGGGAAGGAAGGTCACCGCGCTGTAGA
CTGCAGGAGCGCGATGAAAAAGGGTGAAAAATCCGGAATGGTCCTCGAAA
TCGTGCAGCGTTGCCACGCGCCACATGAAGCATGGCGAAACCTTGAACTT
CACTATAAAGCAAAAGGAACTAGAGAAATTCTTCGCCTGTCCCATGAAAT
CAACGGGAAAACAATAGAACACGGTAGTGATTCATTTAAGTTCATGATGG
AAGTTGACAAGCTGGCAGCAGACCTTCACCGTTTGGGTGACAAATCAGTA
ACAGAACTAAGAAAGTGTGTGCTCATCGTATCTGGCATGTCTGCTGATTT
TGAAATGGAATGTCGCATACTAGAAAACAACCCTGATGGTCTCAACTGGG
CAGAGATTGAACGTGTTATAGGTAATCAGTACAACAGACTTCTCAGGCAG
CAACAGGACTCAAAGGCATTGTTAGCGTCGAGGGGCACCGTCACGGCAAA
TCGAGAAAAGGGGAAGAACAGAAGACTCTACAACAAGTTCGACGGAAAAT
GCTTCAATTGCGGGAAGGAAGGTCACCGCGCTGTAGACTGCAGGAGCGCG
ATGAAAAAGGGTGAAAAATCCGGA
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