prot_F-distichus_contig105906.502.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-distichus_contig105906.502.1
Unique Nameprot_F-distichus_contig105906.502.1
Typepolypeptide
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Sequence length74
Homology
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: D8LHW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.670e-34
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQEV 74
            MEKLNRIQSKM EAALLSPENLLLCAPTGAGKTNVAL+ MLHEIGQHR+EDGTIDVD+FK+  VAPMKALVQEV
Sbjct:  525 MEKLNRIQSKMQEAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQEV 598          
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: A0A454XRE1_OSTTA (Sec63 Brl domain-domain-containing protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A454XRE1_OSTTA)

HSP 1 Score: 112 bits (281), Expect = 2.400e-27
Identity = 52/74 (70.27%), Postives = 63/74 (85.14%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQEV 74
            M+ LNR+QS+++E ALLSPEN+LLCAPTGAGKTNVA+L +LHEIG HRR DGT+D   FK+  VAPMKALV E+
Sbjct:  493 MKSLNRVQSRVYECALLSPENMLLCAPTGAGKTNVAVLTILHEIGLHRRRDGTVDTSAFKIVYVAPMKALVSEI 566          
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: A0A7S0Z8P7_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z8P7_9CHLO)

HSP 1 Score: 110 bits (276), Expect = 1.140e-26
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQEV 74
            M+ LNRIQS+++E ALLSPEN+LLCAPTGAGKTNVA++ +LHE+G HRR DG+ID   FK+  VAPMKALV E+
Sbjct:  500 MKSLNRIQSRVYECALLSPENMLLCAPTGAGKTNVAMMTILHEVGLHRRRDGSIDTSAFKIVYVAPMKALVAEI 573          
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: A4S4L6_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S4L6_OSTLU)

HSP 1 Score: 108 bits (271), Expect = 5.390e-26
Identity = 50/74 (67.57%), Postives = 62/74 (83.78%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQEV 74
            M+ LNRIQS+++E ALLSPEN+LLCAPTGAGKTN A+L +LHE+G HRR DG++D   FK+  VAPMKALV E+
Sbjct:  493 MKTLNRIQSRVYECALLSPENMLLCAPTGAGKTNCAMLTILHEVGLHRRRDGSVDTSAFKIVYVAPMKALVAEI 566          
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: UPI000CDAD928 (U5 small nuclear ribonucleoprotein 200 kDa helicase-like n=1 Tax=Cyanistes caeruleus TaxID=156563 RepID=UPI000CDAD928)

HSP 1 Score: 100 bits (250), Expect = 5.740e-26
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0
Query:    4 LNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQE 73
            LNRIQSK+  AAL S ENLLLCAPTGAGKTNVALL ML EIG+H   DGTI+VD FK+  +APM++LVQE
Sbjct:   41 LNRIQSKLFRAALESDENLLLCAPTGAGKTNVALLCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 110          
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: K8YVZ6_NANGC (Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVZ6_NANGC)

HSP 1 Score: 108 bits (270), Expect = 7.340e-26
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQE 73
            M  LNR+QSKM  +AL S ENLLLCAPTGAGKTNVA+L +L+EIGQH REDG++D+D FK+  VAPMKALVQE
Sbjct:   72 MTMLNRVQSKMCSSALYSSENLLLCAPTGAGKTNVAMLCILNEIGQHLREDGSVDLDAFKIVYVAPMKALVQE 144          
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: A0A6J3AHH9_VICPA (U5 small nuclear ribonucleoprotein 200 kDa helicase-like n=2 Tax=Artiodactyla TaxID=91561 RepID=A0A6J3AHH9_VICPA)

HSP 1 Score: 100 bits (248), Expect = 7.360e-26
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 0
Query:    4 LNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQE 73
            LNRIQSK++ AAL + ENLLLCAPTGAGKTNVAL+ ML EIG+H   DGTI+VD FK+  +APM++LVQE
Sbjct:   22 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 91          
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: W7TFU8_9STRA (U5 small nuclear ribonucleoprotein helicase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFU8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 7.360e-26
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQE 73
            M  LNR+QSKM  +AL S ENLLLCAPTGAGKTNVA+L +L+EIGQH REDG++D+D FK+  VAPMKALVQE
Sbjct:  511 MTMLNRVQSKMCSSALYSSENLLLCAPTGAGKTNVAMLCILNEIGQHLREDGSVDLDAFKIVYVAPMKALVQE 583          
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: A0A7S0KUK6_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0KUK6_MICPS)

HSP 1 Score: 107 bits (268), Expect = 1.370e-25
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQE 73
            M+ LNR+QS+++  A+LSPEN+LLCAPTGAGKTNVA+L +LHEIG HR+ DGTID   FK+  VAPMKALV E
Sbjct:  520 MKSLNRVQSQVYNTAMLSPENMLLCAPTGAGKTNVAMLTILHEIGLHRKPDGTIDTSAFKIVYVAPMKALVAE 592          
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: C1N183_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N183_MICPC)

HSP 1 Score: 107 bits (268), Expect = 1.370e-25
Identity = 49/73 (67.12%), Postives = 63/73 (86.30%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQE 73
            M+ LNR+QS+++E A+LSPENLLLCAPTGAGKTNVA+L +LHE+  HRR+DG++D+  FK+  VAPMKALV E
Sbjct:  526 MKSLNRVQSQVYETAMLSPENLLLCAPTGAGKTNVAMLTILHELALHRRQDGSLDLSAFKIVYVAPMKALVAE 598          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHW4_ECTSI1.670e-3489.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A454XRE1_OSTTA2.400e-2770.27Sec63 Brl domain-domain-containing protein n=2 Tax... [more]
A0A7S0Z8P7_9CHLO1.140e-2668.92Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
A4S4L6_OSTLU5.390e-2667.57Uncharacterized protein n=2 Tax=Ostreococcus sp. '... [more]
UPI000CDAD9285.740e-2672.86U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
K8YVZ6_NANGC7.340e-2672.60Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochlor... [more]
A0A6J3AHH9_VICPA7.360e-2670.00U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
W7TFU8_9STRA7.360e-2672.60U5 small nuclear ribonucleoprotein helicase n=3 Ta... [more]
A0A7S0KUK6_MICPS1.370e-2568.49Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
C1N183_MICPC1.370e-2567.12Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

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InterPro
Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 6..73
e-value: 2.2E-9
score: 37.3
NoneNo IPR availableGENE3D3.40.50.300coord: 2..73
e-value: 1.6E-23
score: 85.1
NoneNo IPR availablePANTHERPTHR12131ATP-DEPENDENT RNA AND DNA HELICASEcoord: 1..74
NoneNo IPR availablePANTHERPTHR12131:SF12coord: 1..74
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..73

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 6..73
e-value: 2.2E-9
score: 37.3
NoneNo IPR availableGENE3D3.40.50.300coord: 2..73
e-value: 1.6E-23
score: 85.1
NoneNo IPR availablePANTHERPTHR12131ATP-DEPENDENT RNA AND DNA HELICASEcoord: 1..74
NoneNo IPR availablePANTHERPTHR12131:SF12coord: 1..74
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105906contigF-distichus_contig105906:1392..1613 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Fucus distichus monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105906.502.1mRNA_F-distichus_contig105906.502.1Fucus distichus monoicousmRNAF-distichus_contig105906 1392..1619 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-distichus_contig105906.502.1 ID=prot_F-distichus_contig105906.502.1|Name=mRNA_F-distichus_contig105906.502.1|organism=Fucus distichus monoicous|type=polypeptide|length=74bp
MEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRRE
DGTIDVDTFKLACVAPMKALVQEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase